RNA–Protein interactions for RNA: ENST00000354193.4

SVIP-201, Transcript of small VCP interacting protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SVIP, Length 4,541 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SVIP-201ENST00000354193 CIZ1Q9ULV3 898 aaPredicted RBP13.11□□□□□ -0.31
SVIP-201ENST00000354193 COL9A3Q14050 684 aaPredicted RBP13.11□□□□□ -0.31
SVIP-201ENST00000354193 ANKRD1Q15327 319 aa13.11□□□□□ -0.31
SVIP-201ENST00000354193 ATP2B2Q01814 1243 aa13.11□□□□□ -0.31
SVIP-201ENST00000354193 SF3A1Q15459 793 aaKnown RBP13.11□□□□□ -0.31
SVIP-201ENST00000354193 ME3Q16798 604 aa13.11□□□□□ -0.31
SVIP-201ENST00000354193 SLC51AQ86UW1 340 aa13.11□□□□□ -0.31
SVIP-201ENST00000354193 MINPP1Q9UNW1 487 aa13.11□□□□□ -0.31
SVIP-201ENST00000354193 KLF18A0A0U1RQI7 1052 aa13.1□□□□□ -0.31
SVIP-201ENST00000354193 IFIT3O14879 490 aaKnown RBP13.1□□□□□ -0.31
SVIP-201ENST00000354193 PARP3Q9Y6F1 533 aa13.1□□□□□ -0.31
SVIP-201ENST00000354193 JAK2O60674 1132 aa13.1□□□□□ -0.31
SVIP-201ENST00000354193 KLRK1P26718 216 aa13.1□□□□□ -0.31
SVIP-201ENST00000354193 RBM27Q9P2N5 1060 aaKnown RBP13.1□□□□□ -0.31
SVIP-201ENST00000354193 TPCN1Q9ULQ1 816 aa13.1□□□□□ -0.31
SVIP-201ENST00000354193 MMP10P09238 476 aa13.1□□□□□ -0.31
SVIP-201ENST00000354193 CDHR2Q9BYE9 1310 aa13.1□□□□□ -0.31
SVIP-201ENST00000354193 PRC1O43663 620 aa13.09□□□□□ -0.31
SVIP-201ENST00000354193 STX6O43752 255 aa13.09□□□□□ -0.31
SVIP-201ENST00000354193 CPLX2Q6PUV4 134 aaKnown RBP13.09□□□□□ -0.31
SVIP-201ENST00000354193 HELLSQ9NRZ9 838 aa13.09□□□□□ -0.31
SVIP-201ENST00000354193 WDR33Q9C0J8 1336 aaKnown RBP13.09□□□□□ -0.31
SVIP-201ENST00000354193 NECTIN1Q15223 517 aa13.09□□□□□ -0.31
SVIP-201ENST00000354193 ZMYM1Q5SVZ6 1142 aa13.09□□□□□ -0.31
SVIP-201ENST00000354193 BICD2Q8TD16 824 aa13.09□□□□□ -0.31
SVIP-201ENST00000354193 ZSCAN31Q96LW9 406 aaPredicted RBP13.09□□□□□ -0.31
SVIP-201ENST00000354193 UBAC1Q9BSL1 405 aa13.09□□□□□ -0.31
SVIP-201ENST00000354193 DHX16O60231 1041 aaKnown RBP13.09□□□□□ -0.31
SVIP-201ENST00000354193 RPS6KB1P23443 525 aa13.09□□□□□ -0.31
SVIP-201ENST00000354193 EP400Q96L91 3159 aa13.09□□□□□ -0.31
SVIP-201ENST00000354193 XIRP1Q702N8 1843 aaKnown RBP13.09□□□□□ -0.31
SVIP-201ENST00000354193 BCL9LQ86UU0 1499 aa13.09□□□□□ -0.31
SVIP-201ENST00000354193 E7EWF7 191 aa13.09□□□□□ -0.31
SVIP-201ENST00000354193 GPR108Q9NPR9 543 aa13.09□□□□□ -0.31
SVIP-201ENST00000354193 DOK7Q18PE1 504 aa13.08□□□□□ -0.32
SVIP-201ENST00000354193 OTUD7BQ6GQQ9 843 aa13.08□□□□□ -0.32
SVIP-201ENST00000354193 SRCAPQ6ZRS2 3230 aa13.08□□□□□ -0.32
SVIP-201ENST00000354193 MAGEB6P1A0A0J9YX57 407 aa13.08□□□□□ -0.32
SVIP-201ENST00000354193 SYT1P21579 422 aa13.08□□□□□ -0.32
SVIP-201ENST00000354193 DYNLL1P63167 89 aaKnown RBP13.08□□□□□ -0.32
SVIP-201ENST00000354193 AKAP17AQ02040 695 aaKnown RBP13.08□□□□□ -0.32
SVIP-201ENST00000354193 DEFB132Q7Z7B7 95 aa13.08□□□□□ -0.32
SVIP-201ENST00000354193 NCOA7Q8NI08 942 aa13.08□□□□□ -0.32
SVIP-201ENST00000354193 ZC3H12CQ9C0D7 883 aaKnown RBP13.08□□□□□ -0.32
SVIP-201ENST00000354193 CYP2D7A0A087X1C5 515 aa13.08□□□□□ -0.32
SVIP-201ENST00000354193 CCDC69A6NI79 296 aa13.08□□□□□ -0.32
SVIP-201ENST00000354193 RAB3GAP1Q15042 981 aa13.08□□□□□ -0.32
SVIP-201ENST00000354193 TMEM67Q5HYA8 995 aa13.08□□□□□ -0.32
SVIP-201ENST00000354193 OLFM4Q6UX06 510 aa13.08□□□□□ -0.32
SVIP-201ENST00000354193 ATP6V1DQ9Y5K8 247 aa13.08□□□□□ -0.32
SVIP-201ENST00000354193 MFSD6Q6ZSS7 791 aa13.07□□□□□ -0.32
SVIP-201ENST00000354193 DHX32Q7L7V1 743 aaKnown RBP13.07□□□□□ -0.32
SVIP-201ENST00000354193 KIF3AQ9Y496 699 aa13.07□□□□□ -0.32
SVIP-201ENST00000354193 PICALMQ13492 652 aa13.07□□□□□ -0.32
SVIP-201ENST00000354193 SART3Q15020 963 aaKnown RBP13.07□□□□□ -0.32
SVIP-201ENST00000354193 ZSCAN29Q8IWY8 852 aaPredicted RBP13.07□□□□□ -0.32
SVIP-201ENST00000354193 ZNF804BA4D1E1 1349 aa13.07□□□□□ -0.32
SVIP-201ENST00000354193 AMOTL1Q8IY63 956 aa13.07□□□□□ -0.32
SVIP-201ENST00000354193 CNPY2Q9Y2B0 182 aa13.07□□□□□ -0.32
SVIP-201ENST00000354193 FAM208AQ9UK61 1670 aaKnown RBP13.07□□□□□ -0.32
SVIP-201ENST00000354193 PRDX5P30044 214 aa13.07□□□□□ -0.32
SVIP-201ENST00000354193 MCM5P33992 734 aa13.07□□□□□ -0.32
SVIP-201ENST00000354193 PLA2G12BQ9BX93 195 aa13.07□□□□□ -0.32
SVIP-201ENST00000354193 SH2B1Q9NRF2 756 aaPredicted RBP13.07□□□□□ -0.32
SVIP-201ENST00000354193 POLR3DP05423 398 aaPredicted RBP13.06□□□□□ -0.32
SVIP-201ENST00000354193 DIXDC1Q155Q3 683 aa13.06□□□□□ -0.32
SVIP-201ENST00000354193 MPNDQ8N594 471 aa13.06□□□□□ -0.32
SVIP-201ENST00000354193 BCL2L12Q9HB09 334 aa13.06□□□□□ -0.32
SVIP-201ENST00000354193 SAP30BPQ9UHR5 308 aaKnown RBP13.06□□□□□ -0.32
SVIP-201ENST00000354193 MRC1P22897 1456 aa13.06□□□□□ -0.32
SVIP-201ENST00000354193 COL18A1P39060 1754 aa13.06□□□□□ -0.32
SVIP-201ENST00000354193 MCM9Q9NXL9 1143 aa13.06□□□□□ -0.32
SVIP-201ENST00000354193 FBXO3Q9UK99 471 aa13.06□□□□□ -0.32
SVIP-201ENST00000354193 ZNF609O15014 1411 aa13.06□□□□□ -0.32
SVIP-201ENST00000354193 DNM1Q05193 864 aaKnown RBP13.06□□□□□ -0.32
SVIP-201ENST00000354193 PRR5LQ6MZQ0 368 aa13.06□□□□□ -0.32
SVIP-201ENST00000354193 TXNRD3Q86VQ6 643 aa13.06□□□□□ -0.32
SVIP-201ENST00000354193 LCORLQ8N3X6 602 aa13.06□□□□□ -0.32
SVIP-201ENST00000354193 DISP2A7MBM2 1401 aa13.06□□□□□ -0.32
SVIP-201ENST00000354193 PDCP20941 246 aa13.05□□□□□ -0.32
SVIP-201ENST00000354193 CMTR1Q8N1G2 835 aaKnown RBP13.05□□□□□ -0.32
SVIP-201ENST00000354193 ANKRD2Q9GZV1 360 aa13.05□□□□□ -0.32
SVIP-201ENST00000354193 ZSWIM6Q9HCJ5 1215 aa13.05□□□□□ -0.32
SVIP-201ENST00000354193 DENND2AQ9ULE3 1009 aa13.05□□□□□ -0.32
SVIP-201ENST00000354193 CACNA1FO60840 1977 aa13.05□□□□□ -0.32
SVIP-201ENST00000354193 GTF2IP78347 998 aa13.05□□□□□ -0.32
SVIP-201ENST00000354193 MKNK2Q9HBH9 465 aa13.05□□□□□ -0.32
SVIP-201ENST00000354193 GGA1Q9UJY5 639 aa13.05□□□□□ -0.32
SVIP-201ENST00000354193 BRPF3Q9ULD4 1205 aa13.05□□□□□ -0.32
SVIP-201ENST00000354193 ABCC12Q96J65 1359 aa13.05□□□□□ -0.32
SVIP-201ENST00000354193 LDHBP07195 334 aaKnown RBP13.05□□□□□ -0.32
SVIP-201ENST00000354193 TRIM44Q96DX7 344 aaPredicted RBP13.05□□□□□ -0.32
SVIP-201ENST00000354193 ADD2P35612 726 aa13.05□□□□□ -0.32
SVIP-201ENST00000354193 TRIM29Q14134 588 aa13.05□□□□□ -0.32
SVIP-201ENST00000354193 ZRSR1Q15695 479 aaKnown RBP13.05□□□□□ -0.32
SVIP-201ENST00000354193 BSDC1Q9NW68 430 aaPredicted RBP13.05□□□□□ -0.32
SVIP-201ENST00000354193 hCG_1642624A0A1W2PR95 340 aa13.04□□□□□ -0.32
SVIP-201ENST00000354193 RBM17Q96I25 401 aaKnown RBP13.04□□□□□ -0.32
SVIP-201ENST00000354193 STK32BQ9NY57 414 aa13.04□□□□□ -0.32
SVIP-201ENST00000354193 USP42Q9H9J4 1324 aaKnown RBP13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms