RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 RNF216Q9NWF9 866 aaPredicted RBP19.74■□□□□ 0.75
SMAD4-201ENST00000342988 LRCH2Q5VUJ6 765 aa19.74■□□□□ 0.75
SMAD4-201ENST00000342988 TMTC2Q8N394 836 aa19.74■□□□□ 0.75
SMAD4-201ENST00000342988 FNBP4Q8N3X1 1017 aaPredicted RBP19.73■□□□□ 0.75
SMAD4-201ENST00000342988 VWA3BQ502W6 1294 aa19.73■□□□□ 0.75
SMAD4-201ENST00000342988 KRBA2Q6ZNG9 492 aa19.73■□□□□ 0.75
SMAD4-201ENST00000342988 PFDN6O15212 129 aa19.73■□□□□ 0.75
SMAD4-201ENST00000342988 MX2P20592 715 aa19.73■□□□□ 0.75
SMAD4-201ENST00000342988 PRKAR2BP31323 418 aa19.73■□□□□ 0.75
SMAD4-201ENST00000342988 WDR44Q5JSH3 913 aa19.73■□□□□ 0.75
SMAD4-201ENST00000342988 CTTNBP2NLQ9P2B4 639 aa19.73■□□□□ 0.75
SMAD4-201ENST00000342988 DNAI1Q9UI46 699 aa19.73■□□□□ 0.75
SMAD4-201ENST00000342988 SYT1P21579 422 aa19.73■□□□□ 0.75
SMAD4-201ENST00000342988 FERMT3Q86UX7 667 aa19.73■□□□□ 0.75
SMAD4-201ENST00000342988 ZGPATQ8N5A5 531 aaKnown RBP19.73■□□□□ 0.75
SMAD4-201ENST00000342988 RILPQ96NA2 401 aa19.73■□□□□ 0.75
SMAD4-201ENST00000342988 MICAL3Q7RTP6 2002 aa19.73■□□□□ 0.75
SMAD4-201ENST00000342988 APOEP02649 317 aa19.73■□□□□ 0.75
SMAD4-201ENST00000342988 PTGS1P23219 599 aa19.73■□□□□ 0.75
SMAD4-201ENST00000342988 FAM160A1Q05DH4 1040 aa19.73■□□□□ 0.75
SMAD4-201ENST00000342988 HSPA8P11142 646 aaKnown RBP19.73■□□□□ 0.75
SMAD4-201ENST00000342988 NONOQ15233 471 aaKnown RBP eCLIP19.73■□□□□ 0.75
SMAD4-201ENST00000342988 AP1ARQ63HQ0 302 aa19.73■□□□□ 0.75
SMAD4-201ENST00000342988 CALML3P27482 149 aa19.72■□□□□ 0.75
SMAD4-201ENST00000342988 LCA5Q86VQ0 697 aa19.72■□□□□ 0.75
SMAD4-201ENST00000342988 NDUFAB1O14561 156 aa19.72■□□□□ 0.75
SMAD4-201ENST00000342988 NUTM2GQ5VZR2 741 aa19.72■□□□□ 0.75
SMAD4-201ENST00000342988 UBE2Q2Q8WVN8 375 aa19.72■□□□□ 0.75
SMAD4-201ENST00000342988 BCAR3O75815 825 aa19.72■□□□□ 0.75
SMAD4-201ENST00000342988 SKILP12757 684 aa19.72■□□□□ 0.75
SMAD4-201ENST00000342988 MX1P20591 662 aa19.72■□□□□ 0.75
SMAD4-201ENST00000342988 TLDC2A0PJX2 215 aa19.72■□□□□ 0.75
SMAD4-201ENST00000342988 RPL13P26373 211 aaKnown RBP19.72■□□□□ 0.75
SMAD4-201ENST00000342988 ARID5AQ03989 594 aa19.72■□□□□ 0.75
SMAD4-201ENST00000342988 TSPY2A6NKD2 308 aa19.71■□□□□ 0.75
SMAD4-201ENST00000342988 SPDYE3A6NKU9 549 aa19.71■□□□□ 0.75
SMAD4-201ENST00000342988 HPDP32754 393 aaPredicted RBP19.71■□□□□ 0.75
SMAD4-201ENST00000342988 LIN9Q5TKA1 542 aa19.71■□□□□ 0.75
SMAD4-201ENST00000342988 RASEFQ8IZ41 740 aa19.71■□□□□ 0.75
SMAD4-201ENST00000342988 LDHCP07864 332 aa19.71■□□□□ 0.75
SMAD4-201ENST00000342988 UTP14CQ5TAP6 766 aaKnown RBP19.71■□□□□ 0.75
SMAD4-201ENST00000342988 RRAGBQ5VZM2 374 aa19.71■□□□□ 0.75
SMAD4-201ENST00000342988 RNF34Q969K3 372 aa19.71■□□□□ 0.75
SMAD4-201ENST00000342988 ESCO1Q5FWF5 840 aa19.71■□□□□ 0.75
SMAD4-201ENST00000342988 CDAN1Q8IWY9 1227 aa19.71■□□□□ 0.75
SMAD4-201ENST00000342988 GOLGA8CPA6NN73 597 aa19.71■□□□□ 0.75
SMAD4-201ENST00000342988 GNAQP50148 359 aa19.71■□□□□ 0.75
SMAD4-201ENST00000342988 UBXN1Q04323 297 aa19.71■□□□□ 0.75
SMAD4-201ENST00000342988 TCP11L2Q8N4U5 519 aa19.71■□□□□ 0.75
SMAD4-201ENST00000342988 VSIG1Q86XK7 387 aa19.7■□□□□ 0.74
SMAD4-201ENST00000342988 ANKRD20A3Q5VUR7 823 aa19.7■□□□□ 0.74
SMAD4-201ENST00000342988 ZNF530Q6P9A1 599 aaPredicted RBP19.7■□□□□ 0.74
SMAD4-201ENST00000342988 XRCC6P12956 609 aaKnown RBP eCLIP19.7■□□□□ 0.74
SMAD4-201ENST00000342988 NBPF6Q5VWK0 638 aa19.7■□□□□ 0.74
SMAD4-201ENST00000342988 RPAP2Q8IXW5 612 aaPredicted RBP19.7■□□□□ 0.74
SMAD4-201ENST00000342988 DDX54Q8TDD1 881 aaKnown RBP19.7■□□□□ 0.74
SMAD4-201ENST00000342988 NBPF4Q96M43 638 aa19.7■□□□□ 0.74
SMAD4-201ENST00000342988 NACA2Q9H009 215 aa19.7■□□□□ 0.74
SMAD4-201ENST00000342988 CCDC93Q567U6 631 aa19.7■□□□□ 0.74
SMAD4-201ENST00000342988 DENND2CQ68D51 928 aa19.7■□□□□ 0.74
SMAD4-201ENST00000342988 MAP2K2P36507 400 aa19.7■□□□□ 0.74
SMAD4-201ENST00000342988 PRPF40BQ6NWY9 871 aaKnown RBP19.7■□□□□ 0.74
SMAD4-201ENST00000342988 CALM1P0DP23 149 aa19.7■□□□□ 0.74
SMAD4-201ENST00000342988 CALM2P0DP24 149 aa19.7■□□□□ 0.74
SMAD4-201ENST00000342988 CALM3P0DP25 149 aa19.7■□□□□ 0.74
SMAD4-201ENST00000342988 KRT23Q9C075 422 aa19.7■□□□□ 0.74
SMAD4-201ENST00000342988 E9PMD0 336 aa19.69■□□□□ 0.74
SMAD4-201ENST00000342988 ESRRGP62508 458 aa19.69■□□□□ 0.74
SMAD4-201ENST00000342988 ZC3H15Q8WU90 426 aaKnown RBP19.69■□□□□ 0.74
SMAD4-201ENST00000342988 MAN1A2O60476 641 aa19.69■□□□□ 0.74
SMAD4-201ENST00000342988 HHATQ5VTY9 493 aa19.69■□□□□ 0.74
SMAD4-201ENST00000342988 SERPINI2O75830 405 aa19.69■□□□□ 0.74
SMAD4-201ENST00000342988 ATICP31939 592 aa19.69■□□□□ 0.74
SMAD4-201ENST00000342988 GUCY1B3Q02153 619 aa19.69■□□□□ 0.74
SMAD4-201ENST00000342988 PARP2Q9UGN5 583 aa19.69■□□□□ 0.74
SMAD4-201ENST00000342988 GCKP35557 465 aa19.69■□□□□ 0.74
SMAD4-201ENST00000342988 CCDC138Q96M89 665 aa19.69■□□□□ 0.74
SMAD4-201ENST00000342988 P3H4Q92791 437 aa19.69■□□□□ 0.74
SMAD4-201ENST00000342988 SPDL1Q96EA4 605 aa19.69■□□□□ 0.74
SMAD4-201ENST00000342988 FAM212AQ96EL1 285 aa19.69■□□□□ 0.74
SMAD4-201ENST00000342988 RBM27Q9P2N5 1060 aaKnown RBP19.69■□□□□ 0.74
SMAD4-201ENST00000342988 ANGPTL3Q9Y5C1 460 aa19.68■□□□□ 0.74
SMAD4-201ENST00000342988 OGFRQ9NZT2 677 aa19.68■□□□□ 0.74
SMAD4-201ENST00000342988 PPP1R9AQ9ULJ8 1098 aa19.68■□□□□ 0.74
SMAD4-201ENST00000342988 CFAP70Q5T0N1 1121 aa19.68■□□□□ 0.74
SMAD4-201ENST00000342988 CNNM2Q9H8M5 875 aa19.68■□□□□ 0.74
SMAD4-201ENST00000342988 NOX5Q96PH1 765 aa19.68■□□□□ 0.74
SMAD4-201ENST00000342988 SLC8A1P32418 973 aa19.68■□□□□ 0.74
SMAD4-201ENST00000342988 PPP1R2P41236 205 aa19.68■□□□□ 0.74
SMAD4-201ENST00000342988 ZNF569Q5MCW4 686 aa19.68■□□□□ 0.74
SMAD4-201ENST00000342988 KIF21BO75037 1637 aa19.68■□□□□ 0.74
SMAD4-201ENST00000342988 ZNF692Q9BU19 519 aaPredicted RBP19.68■□□□□ 0.74
SMAD4-201ENST00000342988 EIF3DO15371 548 aaKnown RBP eCLIP19.67■□□□□ 0.74
SMAD4-201ENST00000342988 CCDC68Q9H2F9 335 aa19.67■□□□□ 0.74
SMAD4-201ENST00000342988 EPB41P11171 864 aaKnown RBP19.67■□□□□ 0.74
SMAD4-201ENST00000342988 SPATS2Q86XZ4 545 aaKnown RBP19.67■□□□□ 0.74
SMAD4-201ENST00000342988 LEO1Q8WVC0 666 aaPredicted RBP19.67■□□□□ 0.74
SMAD4-201ENST00000342988 RBSNQ9H1K0 784 aa19.67■□□□□ 0.74
SMAD4-201ENST00000342988 ABCC8Q09428 1581 aa19.67■□□□□ 0.74
SMAD4-201ENST00000342988 NCOA7Q8NI08 942 aa19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms