RNA–Protein interactions for RNA: ENST00000338910.8

PSPC1-201, Transcript of paraspeckle component 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PSPC1, Length 2,407 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSPC1-201ENST00000338910 PAXBP1Q9Y5B6 917 aa22.04■■□□□ 1.12
PSPC1-201ENST00000338910 ITGA6P23229 1130 aa22.03■■□□□ 1.12
PSPC1-201ENST00000338910 KRT85P78386 507 aa22.03■■□□□ 1.12
PSPC1-201ENST00000338910 CAMK4Q16566 473 aa22.03■■□□□ 1.12
PSPC1-201ENST00000338910 TAF3Q5VWG9 929 aa22.03■■□□□ 1.12
PSPC1-201ENST00000338910 CGNQ9P2M7 1197 aaKnown RBP22.03■■□□□ 1.12
PSPC1-201ENST00000338910 ANKRD36CQ5JPF3 1778 aa22.03■■□□□ 1.12
PSPC1-201ENST00000338910 ZNF75DP51815 510 aa22.02■■□□□ 1.12
PSPC1-201ENST00000338910 FKBP4Q02790 459 aaKnown RBP eCLIP22.02■■□□□ 1.12
PSPC1-201ENST00000338910 ARHGAP30Q7Z6I6 1101 aaPredicted RBP22.02■■□□□ 1.12
PSPC1-201ENST00000338910 XAGE2Q96GT9 111 aa22.02■■□□□ 1.12
PSPC1-201ENST00000338910 FGD1P98174 961 aa22.02■■□□□ 1.12
PSPC1-201ENST00000338910 BLOC1S2Q6QNY1 142 aa22.02■■□□□ 1.12
PSPC1-201ENST00000338910 LDHAL6AQ6ZMR3 332 aa22.02■■□□□ 1.12
PSPC1-201ENST00000338910 AKAP2Q9Y2D5 859 aa22.02■■□□□ 1.12
PSPC1-201ENST00000338910 HSPA1LP34931 641 aa22.01■■□□□ 1.11
PSPC1-201ENST00000338910 ME3Q16798 604 aa22.01■■□□□ 1.11
PSPC1-201ENST00000338910 ANO6Q4KMQ2 910 aa22.01■■□□□ 1.11
PSPC1-201ENST00000338910 MEX3CQ5U5Q3 659 aaKnown RBP22.01■■□□□ 1.11
PSPC1-201ENST00000338910 USPL1Q5W0Q7 1092 aa22.01■■□□□ 1.11
PSPC1-201ENST00000338910 FBXO3Q9UK99 471 aa22.01■■□□□ 1.11
PSPC1-201ENST00000338910 CTSWP56202 376 aa22.01■■□□□ 1.11
PSPC1-201ENST00000338910 CCDC158Q5M9N0 1113 aa22.01■■□□□ 1.11
PSPC1-201ENST00000338910 RBM43Q6ZSC3 357 aaKnown RBP22.01■■□□□ 1.11
PSPC1-201ENST00000338910 CAMTA2O94983 1202 aa22■■□□□ 1.11
PSPC1-201ENST00000338910 NAA30Q147X3 362 aaPredicted RBP22■■□□□ 1.11
PSPC1-201ENST00000338910 ZNF771Q7L3S4 317 aaPredicted RBP22■■□□□ 1.11
PSPC1-201ENST00000338910 NECAB1Q8N987 351 aa22■■□□□ 1.11
PSPC1-201ENST00000338910 TDRD7Q8NHU6 1098 aaKnown RBP22■■□□□ 1.11
PSPC1-201ENST00000338910 TNMDQ9H2S6 317 aa22■■□□□ 1.11
PSPC1-201ENST00000338910 HMG20BQ9P0W2 317 aa22■■□□□ 1.11
PSPC1-201ENST00000338910 TPCN1Q9ULQ1 816 aa22■■□□□ 1.11
PSPC1-201ENST00000338910 MORC2Q9Y6X9 1032 aaPredicted RBP22■■□□□ 1.11
PSPC1-201ENST00000338910 RFX7Q2KHR2 1363 aa22■■□□□ 1.11
PSPC1-201ENST00000338910 TTC39AQ5SRH9 613 aa22■■□□□ 1.11
PSPC1-201ENST00000338910 DRC7Q8IY82 874 aa22■■□□□ 1.11
PSPC1-201ENST00000338910 CKAP2LQ8IYA6 745 aa22■■□□□ 1.11
PSPC1-201ENST00000338910 CCDC112Q8NEF3 446 aa22■■□□□ 1.11
PSPC1-201ENST00000338910 TRIM5Q9C035 493 aa22■■□□□ 1.11
PSPC1-201ENST00000338910 PDE4CQ08493 712 aa21.99■■□□□ 1.11
PSPC1-201ENST00000338910 METTL24Q5JXM2 366 aa21.99■■□□□ 1.11
PSPC1-201ENST00000338910 SUSD4Q5VX71 490 aa21.99■■□□□ 1.11
PSPC1-201ENST00000338910 DACT1Q9NYF0 836 aa21.99■■□□□ 1.11
PSPC1-201ENST00000338910 ANKRD18BA2A2Z9 1011 aa21.99■■□□□ 1.11
PSPC1-201ENST00000338910 PDIA4P13667 645 aaKnown RBP21.99■■□□□ 1.11
PSPC1-201ENST00000338910 TSGA10IPQ3SY00 556 aa21.99■■□□□ 1.11
PSPC1-201ENST00000338910 LARP1BQ659C4 914 aaKnown RBP21.99■■□□□ 1.11
PSPC1-201ENST00000338910 CDC37L1Q7L3B6 337 aa21.99■■□□□ 1.11
PSPC1-201ENST00000338910 CNNM1Q9NRU3 951 aa21.99■■□□□ 1.11
PSPC1-201ENST00000338910 RIPOR2Q9Y4F9 1068 aa21.99■■□□□ 1.11
PSPC1-201ENST00000338910 RPS6KB1P23443 525 aa21.98■■□□□ 1.11
PSPC1-201ENST00000338910 LINC00116Q8NCU8 138 aa21.98■■□□□ 1.11
PSPC1-201ENST00000338910 U3KPZ7 1027 aaPredicted RBP21.98■■□□□ 1.11
PSPC1-201ENST00000338910 SH3TC1Q8TE82 1336 aa21.98■■□□□ 1.11
PSPC1-201ENST00000338910 PDE8AO60658 829 aa21.98■■□□□ 1.11
PSPC1-201ENST00000338910 SLFN14P0C7P3 912 aa21.98■■□□□ 1.11
PSPC1-201ENST00000338910 KIF18AQ8NI77 898 aa21.98■■□□□ 1.11
PSPC1-201ENST00000338910 CACTINQ8WUQ7 758 aaKnown RBP21.98■■□□□ 1.11
PSPC1-201ENST00000338910 CYP21A2P08686 494 aa21.97■■□□□ 1.11
PSPC1-201ENST00000338910 FAM173BQ6P4H8 233 aa21.97■■□□□ 1.11
PSPC1-201ENST00000338910 AEBP2Q6ZN18 517 aaPredicted RBP21.97■■□□□ 1.11
PSPC1-201ENST00000338910 HELLSQ9NRZ9 838 aa21.97■■□□□ 1.11
PSPC1-201ENST00000338910 DDX19AQ9NUU7 478 aaKnown RBP21.97■■□□□ 1.11
PSPC1-201ENST00000338910 SCARF1Q14162 830 aa21.97■■□□□ 1.11
PSPC1-201ENST00000338910 ZMYM1Q5SVZ6 1142 aa21.97■■□□□ 1.11
PSPC1-201ENST00000338910 FERMT3Q86UX7 667 aa21.97■■□□□ 1.11
PSPC1-201ENST00000338910 RNF113AO15541 343 aaKnown RBP21.96■■□□□ 1.11
PSPC1-201ENST00000338910 GJD4Q96KN9 370 aaPredicted RBP21.96■■□□□ 1.11
PSPC1-201ENST00000338910 RREB1Q92766 1687 aa21.96■■□□□ 1.11
PSPC1-201ENST00000338910 MYH3P11055 1940 aa21.96■■□□□ 1.11
PSPC1-201ENST00000338910 NEK1Q96PY6 1258 aa21.96■■□□□ 1.11
PSPC1-201ENST00000338910 CLSTN2Q9H4D0 955 aa21.96■■□□□ 1.11
PSPC1-201ENST00000338910 NIP7Q9Y221 180 aaKnown RBP eCLIP21.96■■□□□ 1.11
PSPC1-201ENST00000338910 CICQ96RK0 1608 aaPredicted RBP21.95■■□□□ 1.11
PSPC1-201ENST00000338910 KRT32Q14532 448 aa21.95■■□□□ 1.1
PSPC1-201ENST00000338910 TPD52L1Q16890 204 aaPredicted RBP21.95■■□□□ 1.1
PSPC1-201ENST00000338910 PI16Q6UXB8 463 aa21.95■■□□□ 1.1
PSPC1-201ENST00000338910 PPIL4Q8WUA2 492 aaKnown RBP eCLIP21.95■■□□□ 1.1
PSPC1-201ENST00000338910 SCAND2PQ9GZW5 306 aaPredicted RBP21.95■■□□□ 1.1
PSPC1-201ENST00000338910 EP400Q96L91 3159 aa21.95■■□□□ 1.1
PSPC1-201ENST00000338910 AFF2P51816 1311 aa21.95■■□□□ 1.1
PSPC1-201ENST00000338910 TOB2Q14106 344 aaPredicted RBP21.95■■□□□ 1.1
PSPC1-201ENST00000338910 CCDC144BQ3MJ40 725 aa21.95■■□□□ 1.1
PSPC1-201ENST00000338910 SMIM5Q71RC9 77 aa21.95■■□□□ 1.1
PSPC1-201ENST00000338910 CCDC144CPQ8IYA2 1237 aa21.95■■□□□ 1.1
PSPC1-201ENST00000338910 UTP14AQ9BVJ6 771 aaKnown RBP21.95■■□□□ 1.1
PSPC1-201ENST00000338910 CLIP2Q9UDT6 1046 aa21.95■■□□□ 1.1
PSPC1-201ENST00000338910 PDCP20941 246 aa21.94■■□□□ 1.1
PSPC1-201ENST00000338910 CDC25BP30305 580 aa21.94■■□□□ 1.1
PSPC1-201ENST00000338910 ZAP70P43403 619 aa21.94■■□□□ 1.1
PSPC1-201ENST00000338910 ZNF165P49910 485 aa21.94■■□□□ 1.1
PSPC1-201ENST00000338910 COL5A3P25940 1745 aaPredicted RBP21.94■■□□□ 1.1
PSPC1-201ENST00000338910 ANKRD1Q15327 319 aa21.94■■□□□ 1.1
PSPC1-201ENST00000338910 CEP135Q66GS9 1140 aa21.94■■□□□ 1.1
PSPC1-201ENST00000338910 MAST3O60307 1309 aa21.93■■□□□ 1.1
PSPC1-201ENST00000338910 HSPD1P10809 573 aaKnown RBP21.92■■□□□ 1.1
PSPC1-201ENST00000338910 STK3Q13188 491 aa21.92■■□□□ 1.1
PSPC1-201ENST00000338910 OSBP2Q969R2 916 aa21.92■■□□□ 1.1
PSPC1-201ENST00000338910 SPATA32Q96LK8 384 aa21.92■■□□□ 1.1
PSPC1-201ENST00000338910 THSD7AQ9UPZ6 1657 aa21.92■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms