RNA–Protein interactions for RNA: ENST00000296215.7

SNIP1-201, Transcript of Smad nuclear interacting protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNIP1, Length 4,605 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNIP1-201ENST00000296215 UBA5Q9GZZ9 404 aa13.24□□□□□ -0.29
SNIP1-201ENST00000296215 DAAM1Q9Y4D1 1078 aa13.24□□□□□ -0.29
SNIP1-201ENST00000296215 FHOD1Q9Y613 1164 aa13.24□□□□□ -0.29
SNIP1-201ENST00000296215 CCDC18Q5T9S5 1454 aa13.24□□□□□ -0.29
SNIP1-201ENST00000296215 SMARCA2P51531 1590 aa13.24□□□□□ -0.29
SNIP1-201ENST00000296215 PKD2Q13563 968 aa13.24□□□□□ -0.29
SNIP1-201ENST00000296215 CXorf38Q8TB03 319 aa13.24□□□□□ -0.29
SNIP1-201ENST00000296215 OSBPL1AQ9BXW6 950 aa13.24□□□□□ -0.29
SNIP1-201ENST00000296215 NOB1Q9ULX3 412 aaKnown RBP13.24□□□□□ -0.29
SNIP1-201ENST00000296215 MAP3K1Q13233 1512 aa13.23□□□□□ -0.29
SNIP1-201ENST00000296215 GSCP56915 257 aaPredicted RBP13.23□□□□□ -0.29
SNIP1-201ENST00000296215 SND1Q7KZF4 910 aaKnown RBP eCLIP13.23□□□□□ -0.29
SNIP1-201ENST00000296215 HOOK2Q96ED9 719 aa13.23□□□□□ -0.29
SNIP1-201ENST00000296215 LUC7LQ9NQ29 371 aaKnown RBP13.23□□□□□ -0.29
SNIP1-201ENST00000296215 ABCF2Q9UG63 623 aa13.23□□□□□ -0.29
SNIP1-201ENST00000296215 BAZ1AQ9NRL2 1556 aaPredicted RBP13.23□□□□□ -0.29
SNIP1-201ENST00000296215 NKTRP30414 1462 aaKnown RBP13.23□□□□□ -0.29
SNIP1-201ENST00000296215 RARSP54136 660 aaKnown RBP13.23□□□□□ -0.29
SNIP1-201ENST00000296215 SNX1Q13596 522 aa13.23□□□□□ -0.29
SNIP1-201ENST00000296215 CFAP157Q5JU67 520 aa13.23□□□□□ -0.29
SNIP1-201ENST00000296215 ZNF280DQ6N043 979 aa13.23□□□□□ -0.29
SNIP1-201ENST00000296215 STMN2Q93045 179 aa13.23□□□□□ -0.29
SNIP1-201ENST00000296215 PPP1R13BQ96KQ4 1090 aa13.23□□□□□ -0.29
SNIP1-201ENST00000296215 THUMPD2Q9BTF0 503 aaKnown RBP13.23□□□□□ -0.29
SNIP1-201ENST00000296215 LIMCH1Q9UPQ0 1083 aa13.23□□□□□ -0.29
SNIP1-201ENST00000296215 MAP7D3Q8IWC1 876 aa13.23□□□□□ -0.29
SNIP1-201ENST00000296215 EXOC8Q8IYI6 725 aa13.23□□□□□ -0.29
SNIP1-201ENST00000296215 EZH1Q92800 747 aaPredicted RBP13.23□□□□□ -0.29
SNIP1-201ENST00000296215 EXOC1Q9NV70 894 aa13.23□□□□□ -0.29
SNIP1-201ENST00000296215 LMBR1Q8WVP7 490 aa13.22□□□□□ -0.29
SNIP1-201ENST00000296215 CAPZA3Q96KX2 299 aa13.22□□□□□ -0.29
SNIP1-201ENST00000296215 ZSCAN16Q9H4T2 348 aaPredicted RBP13.22□□□□□ -0.29
SNIP1-201ENST00000296215 PFDN4Q9NQP4 134 aa13.22□□□□□ -0.29
SNIP1-201ENST00000296215 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.22□□□□□ -0.29
SNIP1-201ENST00000296215 CPLX1O14810 134 aa13.22□□□□□ -0.29
SNIP1-201ENST00000296215 LMOD1P29536 600 aaPredicted RBP13.22□□□□□ -0.29
SNIP1-201ENST00000296215 PIP4K2AP48426 406 aaPredicted RBP13.22□□□□□ -0.29
SNIP1-201ENST00000296215 TDRD7Q8NHU6 1098 aaKnown RBP13.22□□□□□ -0.29
SNIP1-201ENST00000296215 INTS4Q96HW7 963 aaKnown RBP13.22□□□□□ -0.29
SNIP1-201ENST00000296215 CHAMP1Q96JM3 812 aa13.22□□□□□ -0.29
SNIP1-201ENST00000296215 EXOC6BQ9Y2D4 811 aa13.22□□□□□ -0.29
SNIP1-201ENST00000296215 TACC1O75410 805 aa13.22□□□□□ -0.29
SNIP1-201ENST00000296215 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.22□□□□□ -0.29
SNIP1-201ENST00000296215 SREK1Q8WXA9 508 aaKnown RBP13.22□□□□□ -0.29
SNIP1-201ENST00000296215 MEFVO15553 781 aaPredicted RBP13.22□□□□□ -0.29
SNIP1-201ENST00000296215 FLOT1O75955 427 aa13.22□□□□□ -0.29
SNIP1-201ENST00000296215 GJB2P29033 226 aa13.22□□□□□ -0.29
SNIP1-201ENST00000296215 SPTY2D1Q68D10 685 aaPredicted RBP13.22□□□□□ -0.29
SNIP1-201ENST00000296215 TSHZ1Q6ZSZ6 1077 aa13.22□□□□□ -0.29
SNIP1-201ENST00000296215 DRC3Q9H069 523 aa13.22□□□□□ -0.29
SNIP1-201ENST00000296215 TMOD4Q9NZQ9 345 aa13.22□□□□□ -0.29
SNIP1-201ENST00000296215 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.22□□□□□ -0.29
SNIP1-201ENST00000296215 UACAQ9BZF9 1416 aa13.21□□□□□ -0.29
SNIP1-201ENST00000296215 IPO5O00410 1097 aaKnown RBP13.21□□□□□ -0.29
SNIP1-201ENST00000296215 SGSM2O43147 1006 aa13.21□□□□□ -0.29
SNIP1-201ENST00000296215 SLC3A2P08195 630 aaKnown RBP13.21□□□□□ -0.29
SNIP1-201ENST00000296215 STK3Q13188 491 aa13.21□□□□□ -0.29
SNIP1-201ENST00000296215 RAB3IL1Q8TBN0 382 aa13.21□□□□□ -0.29
SNIP1-201ENST00000296215 PTPRCP08575 1304 aa13.21□□□□□ -0.29
SNIP1-201ENST00000296215 PCYT1AP49585 367 aa13.21□□□□□ -0.29
SNIP1-201ENST00000296215 FSIP1Q8NA03 581 aa13.21□□□□□ -0.29
SNIP1-201ENST00000296215 TEKT4Q8WW24 435 aa13.21□□□□□ -0.29
SNIP1-201ENST00000296215 FAM81BQ96LP2 452 aa13.21□□□□□ -0.29
SNIP1-201ENST00000296215 SRCIN1Q9C0H9 1055 aa13.21□□□□□ -0.29
SNIP1-201ENST00000296215 GPTP24298 496 aa13.21□□□□□ -0.3
SNIP1-201ENST00000296215 PPARDQ03181 441 aa13.21□□□□□ -0.3
SNIP1-201ENST00000296215 MYSM1Q5VVJ2 828 aa13.21□□□□□ -0.3
SNIP1-201ENST00000296215 PHLDB2Q86SQ0 1253 aa13.21□□□□□ -0.3
SNIP1-201ENST00000296215 PHLPP2Q6ZVD8 1323 aa13.21□□□□□ -0.3
SNIP1-201ENST00000296215 UBE4AQ14139 1066 aa13.2□□□□□ -0.3
SNIP1-201ENST00000296215 AKNAD1Q5T1N1 836 aa13.2□□□□□ -0.3
SNIP1-201ENST00000296215 RPAP2Q8IXW5 612 aaPredicted RBP13.2□□□□□ -0.3
SNIP1-201ENST00000296215 CCDC88BA6NC98 1476 aa13.2□□□□□ -0.3
SNIP1-201ENST00000296215 NPHP3Q7Z494 1330 aa13.2□□□□□ -0.3
SNIP1-201ENST00000296215 STXBP3O00186 592 aa13.2□□□□□ -0.3
SNIP1-201ENST00000296215 ARHGAP6O43182 974 aa13.2□□□□□ -0.3
SNIP1-201ENST00000296215 PDHA1P08559 390 aa13.2□□□□□ -0.3
SNIP1-201ENST00000296215 THEMIS2Q5TEJ8 643 aa13.2□□□□□ -0.3
SNIP1-201ENST00000296215 ZNF653Q96CK0 615 aa13.2□□□□□ -0.3
SNIP1-201ENST00000296215 NAPGQ99747 312 aaPredicted RBP13.2□□□□□ -0.3
SNIP1-201ENST00000296215 SELENOSQ9BQE4 189 aa13.2□□□□□ -0.3
SNIP1-201ENST00000296215 ZNF446Q9NWS9 450 aa13.2□□□□□ -0.3
SNIP1-201ENST00000296215 RRBP1Q9P2E9 1410 aaKnown RBP13.2□□□□□ -0.3
SNIP1-201ENST00000296215 RBM47A0AV96 593 aaKnown RBP13.2□□□□□ -0.3
SNIP1-201ENST00000296215 OPHN1O60890 802 aa13.2□□□□□ -0.3
SNIP1-201ENST00000296215 CTCFP49711 727 aaPredicted RBP13.2□□□□□ -0.3
SNIP1-201ENST00000296215 TMED10P49755 219 aaKnown RBP13.2□□□□□ -0.3
SNIP1-201ENST00000296215 SF3A3Q12874 501 aaKnown RBP eCLIP13.2□□□□□ -0.3
SNIP1-201ENST00000296215 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.2□□□□□ -0.3
SNIP1-201ENST00000296215 USP33Q8TEY7 942 aa13.2□□□□□ -0.3
SNIP1-201ENST00000296215 ATP6V0A1Q93050 837 aa13.2□□□□□ -0.3
SNIP1-201ENST00000296215 TMCC1O94876 653 aa13.2□□□□□ -0.3
SNIP1-201ENST00000296215 ZNF483Q8TF39 744 aaPredicted RBP13.2□□□□□ -0.3
SNIP1-201ENST00000296215 TAF4BQ92750 862 aa13.2□□□□□ -0.3
SNIP1-201ENST00000296215 ABCB6Q9NP58 842 aa13.2□□□□□ -0.3
SNIP1-201ENST00000296215 MCM8Q9UJA3 840 aa13.2□□□□□ -0.3
SNIP1-201ENST00000296215 ATP6V1G1O75348 118 aa13.19□□□□□ -0.3
SNIP1-201ENST00000296215 BRD1O95696 1058 aa13.19□□□□□ -0.3
SNIP1-201ENST00000296215 PPP2R1AP30153 589 aa13.19□□□□□ -0.3
SNIP1-201ENST00000296215 MAGEA8P43361 318 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms