RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 ZFYVE9O95405 1425 aa19.64■□□□□ 0.73
SHANK1-201ENST00000293441 TMEM110-MUSTN1A8MSY1 372 aa19.64■□□□□ 0.73
SHANK1-201ENST00000293441 MBD4O95243 580 aa19.64■□□□□ 0.73
SHANK1-201ENST00000293441 PTGS1P23219 599 aa19.64■□□□□ 0.73
SHANK1-201ENST00000293441 KIAA0753Q2KHM9 967 aa19.64■□□□□ 0.73
SHANK1-201ENST00000293441 UNC13AQ9UPW8 1703 aa19.64■□□□□ 0.73
SHANK1-201ENST00000293441 MAP3K19Q56UN5 1328 aa19.64■□□□□ 0.73
SHANK1-201ENST00000293441 TEX11Q8IYF3 940 aa19.64■□□□□ 0.73
SHANK1-201ENST00000293441 PKD2L1Q9P0L9 805 aa19.64■□□□□ 0.73
SHANK1-201ENST00000293441 PARP1P09874 1014 aaKnown RBP19.64■□□□□ 0.73
SHANK1-201ENST00000293441 ITGA6P23229 1130 aa19.64■□□□□ 0.73
SHANK1-201ENST00000293441 CCDC171Q6TFL3 1326 aa19.63■□□□□ 0.73
SHANK1-201ENST00000293441 RTL1A6NKG5 1358 aa19.63■□□□□ 0.73
SHANK1-201ENST00000293441 PTPRKQ15262 1439 aa19.63■□□□□ 0.73
SHANK1-201ENST00000293441 AOPEPQ8N6M6 819 aa19.63■□□□□ 0.73
SHANK1-201ENST00000293441 CTR9Q6PD62 1173 aa19.63■□□□□ 0.73
SHANK1-201ENST00000293441 CYLC1P35663 651 aaPredicted RBP19.63■□□□□ 0.73
SHANK1-201ENST00000293441 ZNF408Q9H9D4 720 aa19.63■□□□□ 0.73
SHANK1-201ENST00000293441 BIN2Q9UBW5 565 aaPredicted RBP19.63■□□□□ 0.73
SHANK1-201ENST00000293441 POLR3AO14802 1390 aaPredicted RBP19.62■□□□□ 0.73
SHANK1-201ENST00000293441 BACH1O14867 736 aa19.62■□□□□ 0.73
SHANK1-201ENST00000293441 F13A1P00488 732 aa19.62■□□□□ 0.73
SHANK1-201ENST00000293441 SPTLC2O15270 562 aa19.62■□□□□ 0.73
SHANK1-201ENST00000293441 FAM98CQ17RN3 349 aaKnown RBP19.62■□□□□ 0.73
SHANK1-201ENST00000293441 GPCPD1Q9NPB8 672 aa19.62■□□□□ 0.73
SHANK1-201ENST00000293441 IKBKGQ9Y6K9 419 aa19.62■□□□□ 0.73
SHANK1-201ENST00000293441 POTEB2H3BUK9 544 aa19.62■□□□□ 0.73
SHANK1-201ENST00000293441 CGNQ9P2M7 1197 aaKnown RBP19.62■□□□□ 0.73
SHANK1-201ENST00000293441 GNA11P29992 359 aa19.62■□□□□ 0.73
SHANK1-201ENST00000293441 AK2P54819 239 aa19.62■□□□□ 0.73
SHANK1-201ENST00000293441 CEP135Q66GS9 1140 aa19.62■□□□□ 0.73
SHANK1-201ENST00000293441 EHBP1Q8NDI1 1231 aa19.62■□□□□ 0.73
SHANK1-201ENST00000293441 RNF187Q5TA31 235 aaPredicted RBP19.62■□□□□ 0.73
SHANK1-201ENST00000293441 SSX2IPQ9Y2D8 614 aa19.62■□□□□ 0.73
SHANK1-201ENST00000293441 DACT1Q9NYF0 836 aa19.61■□□□□ 0.73
SHANK1-201ENST00000293441 UVSSAQ2YD98 709 aa19.61■□□□□ 0.73
SHANK1-201ENST00000293441 ZNF790Q6PG37 636 aa19.61■□□□□ 0.73
SHANK1-201ENST00000293441 GIGYF2Q6Y7W6 1299 aaKnown RBP19.61■□□□□ 0.73
SHANK1-201ENST00000293441 TTC6Q86TZ1 520 aa19.61■□□□□ 0.73
SHANK1-201ENST00000293441 CAVIN2O95810 425 aa19.61■□□□□ 0.73
SHANK1-201ENST00000293441 CBX1P83916 185 aa19.61■□□□□ 0.73
SHANK1-201ENST00000293441 PLVAPQ9BX97 442 aa19.61■□□□□ 0.73
SHANK1-201ENST00000293441 EIF6P56537 245 aaKnown RBP19.61■□□□□ 0.73
SHANK1-201ENST00000293441 PICK1Q9NRD5 415 aa19.61■□□□□ 0.73
SHANK1-201ENST00000293441 KIAA0556O60303 1618 aa19.61■□□□□ 0.73
SHANK1-201ENST00000293441 HIBADHP31937 336 aaKnown RBP19.6■□□□□ 0.73
SHANK1-201ENST00000293441 DTHD1Q6ZMT9 781 aa19.6■□□□□ 0.73
SHANK1-201ENST00000293441 TTC12Q9H892 705 aaPredicted RBP19.6■□□□□ 0.73
SHANK1-201ENST00000293441 DDX21Q9NR30 783 aaKnown RBP eCLIP19.6■□□□□ 0.73
SHANK1-201ENST00000293441 LRSAM1Q6UWE0 723 aa19.6■□□□□ 0.73
SHANK1-201ENST00000293441 PLBD2Q8NHP8 589 aa19.6■□□□□ 0.73
SHANK1-201ENST00000293441 RBM28Q9NW13 759 aaKnown RBP19.6■□□□□ 0.73
SHANK1-201ENST00000293441 KLHL40Q2TBA0 621 aa19.6■□□□□ 0.73
SHANK1-201ENST00000293441 RNF216Q9NWF9 866 aaPredicted RBP19.6■□□□□ 0.73
SHANK1-201ENST00000293441 PTPDC1A2A3K4 754 aa19.6■□□□□ 0.73
SHANK1-201ENST00000293441 EEF2P13639 858 aaKnown RBP19.6■□□□□ 0.73
SHANK1-201ENST00000293441 RUFY3Q7L099 469 aa19.6■□□□□ 0.73
SHANK1-201ENST00000293441 ORAI2Q96SN7 254 aa19.6■□□□□ 0.73
SHANK1-201ENST00000293441 MRPS9P82933 396 aaKnown RBP19.6■□□□□ 0.73
SHANK1-201ENST00000293441 DNAJC25Q9H1X3 360 aa19.6■□□□□ 0.73
SHANK1-201ENST00000293441 TIMM10P62072 90 aa19.59■□□□□ 0.73
SHANK1-201ENST00000293441 GGA1Q9UJY5 639 aa19.59■□□□□ 0.73
SHANK1-201ENST00000293441 A0A1B0GUL7 405 aa19.59■□□□□ 0.73
SHANK1-201ENST00000293441 TERF1P54274 439 aa19.59■□□□□ 0.73
SHANK1-201ENST00000293441 DDX17Q92841 729 aaKnown RBP19.59■□□□□ 0.73
SHANK1-201ENST00000293441 LRRC45Q96CN5 670 aa19.59■□□□□ 0.73
SHANK1-201ENST00000293441 DHX32Q7L7V1 743 aaKnown RBP19.59■□□□□ 0.73
SHANK1-201ENST00000293441 CCDC24Q8N4L8 307 aa19.59■□□□□ 0.73
SHANK1-201ENST00000293441 CDCA7Q9BWT1 371 aaPredicted RBP19.59■□□□□ 0.73
SHANK1-201ENST00000293441 CARD14Q9BXL6 1004 aa19.59■□□□□ 0.73
SHANK1-201ENST00000293441 PPP1R14CQ8TAE6 165 aa19.59■□□□□ 0.73
SHANK1-201ENST00000293441 ARMT1Q9H993 441 aa19.59■□□□□ 0.73
SHANK1-201ENST00000293441 SOS1Q07889 1333 aaPredicted RBP19.59■□□□□ 0.73
SHANK1-201ENST00000293441 CCDC175P0C221 793 aa19.58■□□□□ 0.73
SHANK1-201ENST00000293441 OTUD6BQ8N6M0 293 aa19.58■□□□□ 0.73
SHANK1-201ENST00000293441 STX17P56962 302 aa19.58■□□□□ 0.73
SHANK1-201ENST00000293441 PUM3Q15397 648 aaKnown RBP19.58■□□□□ 0.73
SHANK1-201ENST00000293441 DCTPP1Q9H773 170 aa19.58■□□□□ 0.73
SHANK1-201ENST00000293441 TMOD4Q9NZQ9 345 aa19.58■□□□□ 0.73
SHANK1-201ENST00000293441 UHRF1BP1Q6BDS2 1440 aa19.58■□□□□ 0.73
SHANK1-201ENST00000293441 SPAG1Q07617 926 aa19.58■□□□□ 0.73
SHANK1-201ENST00000293441 CCDC129Q6ZRS4 1044 aa19.58■□□□□ 0.73
SHANK1-201ENST00000293441 ZYXQ15942 572 aaKnown RBP19.58■□□□□ 0.72
SHANK1-201ENST00000293441 G2E3Q7L622 706 aa19.58■□□□□ 0.72
SHANK1-201ENST00000293441 ZNF594Q96JF6 807 aaPredicted RBP19.58■□□□□ 0.72
SHANK1-201ENST00000293441 SELENOOQ9BVL4 669 aa19.58■□□□□ 0.72
SHANK1-201ENST00000293441 PARP10Q53GL7 1025 aa19.58■□□□□ 0.72
SHANK1-201ENST00000293441 ZNF830Q96NB3 372 aaPredicted RBP19.58■□□□□ 0.72
SHANK1-201ENST00000293441 SH2D4AQ9H788 454 aa19.58■□□□□ 0.72
SHANK1-201ENST00000293441 PDE8AO60658 829 aa19.57■□□□□ 0.72
SHANK1-201ENST00000293441 HS2ST1Q7LGA3 356 aa19.57■□□□□ 0.72
SHANK1-201ENST00000293441 METTL22Q9BUU2 404 aaPredicted RBP19.57■□□□□ 0.72
SHANK1-201ENST00000293441 HELLSQ9NRZ9 838 aa19.57■□□□□ 0.72
SHANK1-201ENST00000293441 PRIM1P49642 420 aaKnown RBP19.57■□□□□ 0.72
SHANK1-201ENST00000293441 A0A1W2PRG0 241 aa19.57■□□□□ 0.72
SHANK1-201ENST00000293441 B4E1Z4 1266 aa19.57■□□□□ 0.72
SHANK1-201ENST00000293441 RLBP1P12271 317 aa19.57■□□□□ 0.72
SHANK1-201ENST00000293441 GRIPAP1Q4V328 841 aa19.57■□□□□ 0.72
SHANK1-201ENST00000293441 LETM2Q2VYF4 491 aa19.56■□□□□ 0.72
SHANK1-201ENST00000293441 GSTA5Q7RTV2 222 aa19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms