RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 PUM3Q15397 648 aaKnown RBP18.98■□□□□ 0.63
CTCF-201ENST00000264010 GREM2Q9H772 168 aa18.98■□□□□ 0.63
CTCF-201ENST00000264010 NIP7Q9Y221 180 aaKnown RBP eCLIP18.98■□□□□ 0.63
CTCF-201ENST00000264010 CASP7P55210 303 aa18.97■□□□□ 0.63
CTCF-201ENST00000264010 COL15A1P39059 1388 aa18.97■□□□□ 0.63
CTCF-201ENST00000264010 RGPD2P0DJD1 1756 aa18.97■□□□□ 0.63
CTCF-201ENST00000264010 PIP4K2BP78356 416 aa18.97■□□□□ 0.63
CTCF-201ENST00000264010 USPL1Q5W0Q7 1092 aa18.97■□□□□ 0.63
CTCF-201ENST00000264010 JMYQ8N9B5 988 aa18.97■□□□□ 0.63
CTCF-201ENST00000264010 LEO1Q8WVC0 666 aaPredicted RBP18.97■□□□□ 0.63
CTCF-201ENST00000264010 CCDC34Q96HJ3 373 aa18.97■□□□□ 0.63
CTCF-201ENST00000264010 CCDC87Q9NVE4 849 aa18.97■□□□□ 0.63
CTCF-201ENST00000264010 KDM4AO75164 1064 aa18.97■□□□□ 0.63
CTCF-201ENST00000264010 IL6STP40189 918 aaPredicted RBP18.97■□□□□ 0.63
CTCF-201ENST00000264010 PARP10Q53GL7 1025 aa18.97■□□□□ 0.63
CTCF-201ENST00000264010 RAI14Q9P0K7 980 aa18.97■□□□□ 0.63
CTCF-201ENST00000264010 ZKSCAN5Q9Y2L8 839 aa18.97■□□□□ 0.63
CTCF-201ENST00000264010 PATL2C9JE40 543 aaKnown RBP18.96■□□□□ 0.63
CTCF-201ENST00000264010 AK9Q5TCS8 1911 aa18.96■□□□□ 0.63
CTCF-201ENST00000264010 NAA16Q6N069 864 aaPredicted RBP18.96■□□□□ 0.63
CTCF-201ENST00000264010 LPIN2Q92539 896 aa18.96■□□□□ 0.63
CTCF-201ENST00000264010 TSC1Q92574 1164 aa18.96■□□□□ 0.63
CTCF-201ENST00000264010 ZFP91Q96JP5 570 aaPredicted RBP18.96■□□□□ 0.63
CTCF-201ENST00000264010 ABCF2Q9UG63 623 aa18.96■□□□□ 0.63
CTCF-201ENST00000264010 TNNT1P13805 278 aa18.96■□□□□ 0.63
CTCF-201ENST00000264010 TRIM22Q8IYM9 498 aa18.96■□□□□ 0.63
CTCF-201ENST00000264010 NCOA5Q9HCD5 579 aaKnown RBP18.96■□□□□ 0.63
CTCF-201ENST00000264010 TTLL5Q6EMB2 1281 aa18.95■□□□□ 0.62
CTCF-201ENST00000264010 TTC6Q86TZ1 520 aa18.95■□□□□ 0.62
CTCF-201ENST00000264010 CCAR1Q8IX12 1150 aaKnown RBP18.95■□□□□ 0.62
CTCF-201ENST00000264010 FAM200AQ8TCP9 573 aa18.95■□□□□ 0.62
CTCF-201ENST00000264010 ZNF274Q96GC6 653 aaPredicted RBP18.95■□□□□ 0.62
CTCF-201ENST00000264010 ATL3Q6DD88 541 aa18.95■□□□□ 0.62
CTCF-201ENST00000264010 BICDL1Q6ZP65 573 aa18.95■□□□□ 0.62
CTCF-201ENST00000264010 RAB11FIP4Q86YS3 637 aa18.95■□□□□ 0.62
CTCF-201ENST00000264010 FBXW7Q969H0 707 aa18.95■□□□□ 0.62
CTCF-201ENST00000264010 MROH5Q6ZUA9 1318 aa18.95■□□□□ 0.62
CTCF-201ENST00000264010 LMTK3Q96Q04 1460 aa18.95■□□□□ 0.62
CTCF-201ENST00000264010 METAP2P50579 478 aaKnown RBP eCLIP18.94■□□□□ 0.62
CTCF-201ENST00000264010 FSIP1Q8NA03 581 aa18.94■□□□□ 0.62
CTCF-201ENST00000264010 NOL7Q9UMY1 257 aaKnown RBP18.94■□□□□ 0.62
CTCF-201ENST00000264010 ZNF609O15014 1411 aa18.94■□□□□ 0.62
CTCF-201ENST00000264010 PALLDQ8WX93 1383 aa18.94■□□□□ 0.62
CTCF-201ENST00000264010 COL5A2P05997 1499 aaPredicted RBP18.94■□□□□ 0.62
CTCF-201ENST00000264010 HLFQ16534 295 aa18.94■□□□□ 0.62
CTCF-201ENST00000264010 LRP10Q7Z4F1 713 aa18.94■□□□□ 0.62
CTCF-201ENST00000264010 ERVV-1B6SEH8 477 aa18.94■□□□□ 0.62
CTCF-201ENST00000264010 IFIT3O14879 490 aaKnown RBP18.94■□□□□ 0.62
CTCF-201ENST00000264010 TYRO3Q06418 890 aa18.94■□□□□ 0.62
CTCF-201ENST00000264010 TTLL11Q8NHH1 800 aa18.94■□□□□ 0.62
CTCF-201ENST00000264010 OSBP2Q969R2 916 aa18.94■□□□□ 0.62
CTCF-201ENST00000264010 CAVIN2O95810 425 aa18.94■□□□□ 0.62
CTCF-201ENST00000264010 SCRN1Q12765 414 aa18.94■□□□□ 0.62
CTCF-201ENST00000264010 CAVIN4Q5BKX8 364 aa18.94■□□□□ 0.62
CTCF-201ENST00000264010 TMEM67Q5HYA8 995 aa18.94■□□□□ 0.62
CTCF-201ENST00000264010 GPATCH11Q8N954 259 aa18.94■□□□□ 0.62
CTCF-201ENST00000264010 M0R2C6 588 aa18.93■□□□□ 0.62
CTCF-201ENST00000264010 STK11IPQ8N1F8 1099 aa18.93■□□□□ 0.62
CTCF-201ENST00000264010 WASF1Q92558 559 aa18.93■□□□□ 0.62
CTCF-201ENST00000264010 ELP1O95163 1332 aa18.93■□□□□ 0.62
CTCF-201ENST00000264010 GOLGA8AA7E2F4 631 aa18.93■□□□□ 0.62
CTCF-201ENST00000264010 PDE8BO95263 885 aa18.93■□□□□ 0.62
CTCF-201ENST00000264010 UBAC1Q9BSL1 405 aa18.93■□□□□ 0.62
CTCF-201ENST00000264010 CDHR2Q9BYE9 1310 aa18.93■□□□□ 0.62
CTCF-201ENST00000264010 FGAP02671 866 aa18.93■□□□□ 0.62
CTCF-201ENST00000264010 PLA2G12BQ9BX93 195 aa18.93■□□□□ 0.62
CTCF-201ENST00000264010 SLC12A7Q9Y666 1083 aa18.93■□□□□ 0.62
CTCF-201ENST00000264010 SLFNL1Q499Z3 407 aa18.92■□□□□ 0.62
CTCF-201ENST00000264010 RNF41Q9H4P4 317 aaPredicted RBP18.92■□□□□ 0.62
CTCF-201ENST00000264010 CYP19A1P11511 503 aaPredicted RBP18.92■□□□□ 0.62
CTCF-201ENST00000264010 CEP57L1Q8IYX8 460 aa18.92■□□□□ 0.62
CTCF-201ENST00000264010 XBP1P17861 261 aa18.92■□□□□ 0.62
CTCF-201ENST00000264010 ZNF165P49910 485 aa18.92■□□□□ 0.62
CTCF-201ENST00000264010 MICU3Q86XE3 530 aa18.92■□□□□ 0.62
CTCF-201ENST00000264010 HOOK1Q9UJC3 728 aaKnown RBP18.92■□□□□ 0.62
CTCF-201ENST00000264010 PHRF1Q9P1Y6 1649 aaKnown RBP18.91■□□□□ 0.62
CTCF-201ENST00000264010 POLR3DP05423 398 aaPredicted RBP18.91■□□□□ 0.62
CTCF-201ENST00000264010 MFSD6Q6ZSS7 791 aa18.91■□□□□ 0.62
CTCF-201ENST00000264010 ANO10Q9NW15 660 aa18.91■□□□□ 0.62
CTCF-201ENST00000264010 IARSP41252 1262 aaKnown RBP18.91■□□□□ 0.62
CTCF-201ENST00000264010 MAGEB6Q8N7X4 407 aa18.91■□□□□ 0.62
CTCF-201ENST00000264010 TAF6LQ9Y6J9 622 aa18.91■□□□□ 0.62
CTCF-201ENST00000264010 ZBTB43O43298 467 aa18.91■□□□□ 0.62
CTCF-201ENST00000264010 CHGBP05060 677 aa18.91■□□□□ 0.62
CTCF-201ENST00000264010 ANO6Q4KMQ2 910 aa18.91■□□□□ 0.62
CTCF-201ENST00000264010 CCDC102BQ68D86 513 aa18.91■□□□□ 0.62
CTCF-201ENST00000264010 ANKRD18AQ8IVF6 992 aa18.91■□□□□ 0.62
CTCF-201ENST00000264010 KLHL34Q8N239 644 aa18.91■□□□□ 0.62
CTCF-201ENST00000264010 CNNM2Q9H8M5 875 aa18.91■□□□□ 0.62
CTCF-201ENST00000264010 ZNF532Q9HCE3 1301 aa18.9■□□□□ 0.62
CTCF-201ENST00000264010 LIG1P18858 919 aa18.9■□□□□ 0.62
CTCF-201ENST00000264010 PDIA3P30101 505 aaKnown RBP18.9■□□□□ 0.62
CTCF-201ENST00000264010 NUP133Q8WUM0 1156 aa18.9■□□□□ 0.62
CTCF-201ENST00000264010 KRT23Q9C075 422 aa18.9■□□□□ 0.62
CTCF-201ENST00000264010 CLSTN2Q9H4D0 955 aa18.9■□□□□ 0.62
CTCF-201ENST00000264010 MARF1Q9Y4F3 1742 aaKnown RBP18.9■□□□□ 0.62
CTCF-201ENST00000264010 SYNE4Q8N205 404 aa18.9■□□□□ 0.62
CTCF-201ENST00000264010 NSUN7Q8NE18 718 aaKnown RBP18.9■□□□□ 0.62
CTCF-201ENST00000264010 NGLY1Q96IV0 654 aa18.9■□□□□ 0.62
CTCF-201ENST00000264010 MINDY4BA8MYZ0 360 aa18.89■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 419.8 ms