RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 HOGA1Q86XE5 327 aa5.24□□□□□ -1.57
LIG3-206ENST00000586058 SUMF2Q8NBJ7 301 aa5.24□□□□□ -1.57
LIG3-206ENST00000586058 OR5AP2Q8NGF4 316 aa5.24□□□□□ -1.57
LIG3-206ENST00000586058 OR5T2Q8NGG2 359 aa5.24□□□□□ -1.57
LIG3-206ENST00000586058 OR51S1Q8NGJ8 323 aa5.24□□□□□ -1.57
LIG3-206ENST00000586058 ST8SIA4Q92187 359 aa5.24□□□□□ -1.57
LIG3-206ENST00000586058 GTF3AQ92664 365 aaKnown RBP5.24□□□□□ -1.57
LIG3-206ENST00000586058 RDH5Q92781 318 aa5.24□□□□□ -1.57
LIG3-206ENST00000586058 NINJ1Q92982 152 aa5.24□□□□□ -1.57
LIG3-206ENST00000586058 PPP1R14BQ96C90 147 aa5.24□□□□□ -1.57
LIG3-206ENST00000586058 ZNF488Q96MN9 340 aa5.24□□□□□ -1.57
LIG3-206ENST00000586058 VRK1Q99986 396 aaPredicted RBP5.24□□□□□ -1.57
LIG3-206ENST00000586058 FAAP24Q9BTP7 215 aa5.24□□□□□ -1.57
LIG3-206ENST00000586058 DPCDQ9BVM2 203 aaPredicted RBP5.24□□□□□ -1.57
LIG3-206ENST00000586058 MYOZ1Q9NP98 299 aaPredicted RBP5.24□□□□□ -1.57
LIG3-206ENST00000586058 TREM2Q9NZC2 230 aa5.24□□□□□ -1.57
LIG3-206ENST00000586058 CRIM1Q9NZV1 1036 aa5.24□□□□□ -1.57
LIG3-206ENST00000586058 RCC2Q9P258 522 aaKnown RBP5.24□□□□□ -1.57
LIG3-206ENST00000586058 ANXA10Q9UJ72 324 aa5.24□□□□□ -1.57
LIG3-206ENST00000586058 TRAPPC2LQ9UL33 140 aa5.24□□□□□ -1.57
LIG3-206ENST00000586058 DIDO1Q9BTC0 2240 aaKnown RBP5.24□□□□□ -1.57
LIG3-206ENST00000586058 COL6A6A6NMZ7 2263 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 CELSR3Q9NYQ7 3312 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 TRAV38-1A0A0B4J264 116 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 PIGBOS1A0A0B4J2F0 54 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 TMEM82A0PJX8 343 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 OR2AT4A6NND4 320 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 FOXI3A8MTJ6 420 aaPredicted RBP5.23□□□□□ -1.57
LIG3-206ENST00000586058 E7EQL1 145 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 M0QYG6 137 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 HSPA12AO43301 675 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 SSNA1O43805 119 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 NDUFB6O95139 128 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 PTBP3O95758 552 aaKnown RBP5.23□□□□□ -1.57
LIG3-206ENST00000586058 PMP2P02689 132 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 TK1P04183 234 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 CD74P04233 296 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 PGAM2P15259 253 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 MUC1P15941 1255 aaPredicted RBP5.23□□□□□ -1.57
LIG3-206ENST00000586058 DUSP1P28562 367 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 GRNP28799 593 aaKnown RBP5.23□□□□□ -1.57
LIG3-206ENST00000586058 CFHR2P36980 270 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 CCR6P51684 374 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 TMEM50BP56557 158 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 ERVK11-1P61568 191 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 HLA-DRB3P79483 266 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 CCL8P80075 99 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 TFF3Q07654 80 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 SNTB1Q13884 538 aaKnown RBP5.23□□□□□ -1.57
LIG3-206ENST00000586058 ATXN7L3Q14CW9 347 aaPredicted RBP5.23□□□□□ -1.57
LIG3-206ENST00000586058 SURF2Q15527 256 aaPredicted RBP5.23□□□□□ -1.57
LIG3-206ENST00000586058 MPPED2Q15777 294 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 GRK1Q15835 563 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 SRSF7Q16629 238 aaKnown RBP eCLIP5.23□□□□□ -1.57
LIG3-206ENST00000586058 TATDN3Q17R31 274 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 ABCA11PQ4W5N1 156 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 VAX1Q5SQQ9 334 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 OR52W1Q6IF63 320 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 FAAP20Q6NZ36 180 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 LPCAT3Q6P1A2 487 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 MEX3BQ6ZN04 569 aaKnown RBP5.23□□□□□ -1.57
LIG3-206ENST00000586058 SLC36A1Q7Z2H8 476 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 TMED4Q7Z7H5 227 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 WDR86Q86TI4 376 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 BIVMQ86UB2 503 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 MUC20Q8N307 709 aaPredicted RBP5.23□□□□□ -1.57
LIG3-206ENST00000586058 ZNF843Q8N446 348 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 ZNF561Q8N587 486 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 GVQW1Q8N7I0 195 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 ZDHHC22Q8N966 263 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 CCDC71LQ8N9Z2 235 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 OR4S1Q8NGB4 309 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 OR5D13Q8NGL4 314 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 OR6F1Q8NGZ6 308 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 Q8TCH9 128 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 GIMAP1Q8WWP7 306 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 UPRTQ96BW1 309 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 TIMD4Q96H15 378 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 SLC6A7Q99884 636 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 ARPC5LQ9BPX5 153 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 SULT4A1Q9BR01 284 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 MARVELD1Q9BSK0 173 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 FGF23Q9GZV9 251 aaPredicted RBP5.23□□□□□ -1.57
LIG3-206ENST00000586058 MED28Q9H204 178 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 MMP28Q9H239 520 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 CLEC4MQ9H2X3 399 aaPredicted RBP5.23□□□□□ -1.57
LIG3-206ENST00000586058 ZNF665Q9H7R5 613 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 UBTD1Q9HAC8 227 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 HES4Q9HCC6 221 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 CBLN4Q9NTU7 201 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 ING3Q9NXR8 418 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 SLC2A8Q9NY64 477 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 KCNK7Q9Y2U2 307 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 WIPI2Q9Y4P8 454 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 RBM7Q9Y580 266 aaKnown RBP5.23□□□□□ -1.57
LIG3-206ENST00000586058 KLF2Q9Y5W3 355 aaPredicted RBP5.23□□□□□ -1.57
LIG3-206ENST00000586058 PCNX1Q96RV3 2341 aa5.23□□□□□ -1.57
LIG3-206ENST00000586058 YLPM1P49750 1951 aaKnown RBP5.22□□□□□ -1.57
LIG3-206ENST00000586058 PPIAL4EA0A075B759 164 aa5.22□□□□□ -1.57
LIG3-206ENST00000586058 IGHV1-69-2A0A0G2JMI3 117 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms