RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 RAB17Q9H0T7 212 aa1.88□□□□□ -2.11
SCFD1-219ENST00000556413 SLC38A1Q9H2H9 487 aa1.88□□□□□ -2.11
SCFD1-219ENST00000556413 MEAF6Q9HAF1 191 aa1.88□□□□□ -2.11
SCFD1-219ENST00000556413 PSMC3IPQ9P2W1 217 aaPredicted RBP1.88□□□□□ -2.11
SCFD1-219ENST00000556413 ATP6V1HQ9UI12 483 aa1.88□□□□□ -2.11
SCFD1-219ENST00000556413 TMCO1Q9UM00 188 aa1.88□□□□□ -2.11
SCFD1-219ENST00000556413 MGAT4BQ9UQ53 548 aa1.88□□□□□ -2.11
SCFD1-219ENST00000556413 ZNF443Q9Y2A4 671 aaPredicted RBP1.88□□□□□ -2.11
SCFD1-219ENST00000556413 SIGLEC9Q9Y336 463 aa1.88□□□□□ -2.11
SCFD1-219ENST00000556413 STRAPQ9Y3F4 350 aaKnown RBP1.88□□□□□ -2.11
SCFD1-219ENST00000556413 V9GYY5 206 aaPredicted RBP1.88□□□□□ -2.11
SCFD1-219ENST00000556413 PCLOQ9Y6V0 5065 aa1.88□□□□□ -2.11
SCFD1-219ENST00000556413 DNAH9Q9NYC9 4486 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 ARPC4-TTLL3A0A0A6YYG9 625 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 A0A1B0GW55 424 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 A0A1B0GWA3 101 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 CFAP73A6NFT4 308 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 CPSF4LA6NMK7 179 aaKnown RBP1.87□□□□□ -2.11
SCFD1-219ENST00000556413 B4DSR2 109 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 TRAPPC2LH3BP13 241 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 NDUFS8O00217 210 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 COPEO14579 308 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 EIF4E2O60573 245 aaKnown RBP1.87□□□□□ -2.11
SCFD1-219ENST00000556413 SHOX2O60902 331 aaPredicted RBP1.87□□□□□ -2.11
SCFD1-219ENST00000556413 NDUFA7O95182 113 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 AHSA1O95433 338 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 RAB36O95755 333 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 CYB5R3P00387 301 aaPredicted RBP1.87□□□□□ -2.11
SCFD1-219ENST00000556413 IGHV3-48P01763 117 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 DUX4L2P0CJ85 424 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 DUX4L3P0CJ86 424 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 DUX4L5P0CJ88 424 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 DUX4L6P0CJ89 424 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 DUX4L7P0CJ90 424 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 NQO1P15559 274 aaKnown RBP1.87□□□□□ -2.11
SCFD1-219ENST00000556413 CBR1P16152 277 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 ZNF823P16415 610 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 ZNF14P17017 642 aaPredicted RBP1.87□□□□□ -2.11
SCFD1-219ENST00000556413 AHCYP23526 432 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 GABRR1P24046 479 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 CXCR1P25024 350 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 GTF2E2P29084 291 aaKnown RBP1.87□□□□□ -2.11
SCFD1-219ENST00000556413 ACAA2P42765 397 aaKnown RBP1.87□□□□□ -2.11
SCFD1-219ENST00000556413 CRATP43155 626 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 RPL29P47914 159 aaKnown RBP1.87□□□□□ -2.11
SCFD1-219ENST00000556413 BIDP55957 195 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 GMFBP60983 142 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 RND3P61587 244 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 ERVK-25P63136 954 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 SLC35A1P78382 337 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 CAV1Q03135 178 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 FMODQ06828 376 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 CBX3Q13185 183 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 AANATQ16613 207 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 DEFB112Q30KQ8 113 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 ARHGAP11BQ3KRB8 267 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 XKR7Q5GH72 579 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 FREM1Q5H8C1 2179 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 THEM4Q5T1C6 240 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 SAXO2Q658L1 398 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 PVRIGQ6DKI7 326 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 TMEM225Q6GV28 225 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 C1orf94Q6P1W5 598 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 DUX4L9Q6RFH8 374 aaPredicted RBP1.87□□□□□ -2.11
SCFD1-219ENST00000556413 LYPD2Q6UXB3 125 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 ZNF621Q6ZSS3 439 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 MTERF4Q7Z6M4 381 aaKnown RBP1.87□□□□□ -2.11
SCFD1-219ENST00000556413 RBM45Q8IUH3 476 aaKnown RBP1.87□□□□□ -2.11
SCFD1-219ENST00000556413 SLC22A9Q8IVM8 553 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 SKA3Q8IX90 412 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 RIMKLAQ8IXN7 391 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 MICU2Q8IYU8 434 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 ZNF101Q8IZC7 436 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 TMEM123Q8N131 208 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 RIBC1Q8N443 379 aaPredicted RBP1.87□□□□□ -2.11
SCFD1-219ENST00000556413 LRRC18Q8N456 261 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 C17orf78Q8N4C9 275 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 LINC00471Q8N535 108 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 SYT14Q8NB59 555 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 FAM71CQ8NEG0 241 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 DEFB108BQ8NET1 73 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 OR10AD1Q8NGE0 317 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 OR6N1Q8NGY5 312 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 OR52P1PQ8NH57 321 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 PFN4Q8NHR9 129 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 SGMS2Q8NHU3 365 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 ZNF420Q8TAQ5 688 aaPredicted RBP1.87□□□□□ -2.11
SCFD1-219ENST00000556413 SLC25A40Q8TBP6 338 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 SFXN5Q8TD22 340 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 TMEM234Q8WY98 164 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 SLC7A6Q92536 515 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 DCUN1D4Q92564 292 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 RDH5Q92781 318 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 MCHR2Q969V1 340 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 FGGYQ96C11 551 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 LRRC58Q96CX6 371 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 TXN2Q99757 166 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 ULBP2Q9BZM5 246 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 CHIAQ9BZP6 476 aa1.87□□□□□ -2.11
SCFD1-219ENST00000556413 C20orf27Q9GZN8 174 aa1.87□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 114.1 ms