RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 STUMQ69YW2 141 aa6.91□□□□□ -1.3
VPS13D-211ENST00000543710 RHOUQ7L0Q8 258 aa6.91□□□□□ -1.3
VPS13D-211ENST00000543710 ATG4DQ86TL0 474 aaPredicted RBP6.91□□□□□ -1.3
VPS13D-211ENST00000543710 GCSAMQ8N6F7 178 aa6.91□□□□□ -1.3
VPS13D-211ENST00000543710 OR13C5Q8NGS8 318 aa6.91□□□□□ -1.3
VPS13D-211ENST00000543710 OR13G1Q8NGZ3 307 aa6.91□□□□□ -1.3
VPS13D-211ENST00000543710 OR2T6Q8NHC8 308 aa6.91□□□□□ -1.3
VPS13D-211ENST00000543710 GPR119Q8TDV5 335 aa6.91□□□□□ -1.3
VPS13D-211ENST00000543710 BCL2L2Q92843 193 aaPredicted RBP6.91□□□□□ -1.3
VPS13D-211ENST00000543710 WFIKKN1Q96NZ8 548 aa6.91□□□□□ -1.3
VPS13D-211ENST00000543710 ZNF236Q9UL36 1845 aa6.91□□□□□ -1.3
VPS13D-211ENST00000543710 FER1L6Q2WGJ9 1857 aa6.91□□□□□ -1.3
VPS13D-211ENST00000543710 MYH10P35580 1976 aa6.91□□□□□ -1.3
VPS13D-211ENST00000543710 SIX6O95475 246 aa6.9□□□□□ -1.3
VPS13D-211ENST00000543710 BGLAPP02818 100 aa6.9□□□□□ -1.3
VPS13D-211ENST00000543710 CTSSP25774 331 aa6.9□□□□□ -1.3
VPS13D-211ENST00000543710 HAGHQ16775 308 aa6.9□□□□□ -1.3
VPS13D-211ENST00000543710 ANKRD55Q3KP44 614 aa6.9□□□□□ -1.3
VPS13D-211ENST00000543710 C1QL3Q5VWW1 255 aa6.9□□□□□ -1.3
VPS13D-211ENST00000543710 LIAT1Q6ZQX7 453 aa6.9□□□□□ -1.3
VPS13D-211ENST00000543710 SHISA5Q8N114 240 aa6.9□□□□□ -1.3
VPS13D-211ENST00000543710 C9orf62Q8N4C0 152 aa6.9□□□□□ -1.3
VPS13D-211ENST00000543710 TMEM191AQ9H0A3 160 aa6.9□□□□□ -1.3
VPS13D-211ENST00000543710 NARFLQ9H6Q4 476 aa6.9□□□□□ -1.3
VPS13D-211ENST00000543710 RPH3ALQ9UNE2 315 aa6.9□□□□□ -1.3
VPS13D-211ENST00000543710 TRBV5-3A0A0A0MS03 114 aa6.9□□□□□ -1.3
VPS13D-211ENST00000543710 A0A0U1RQV5 110 aa6.9□□□□□ -1.3
VPS13D-211ENST00000543710 C1QAP02745 245 aa6.9□□□□□ -1.3
VPS13D-211ENST00000543710 ISG15P05161 165 aa6.9□□□□□ -1.3
VPS13D-211ENST00000543710 SQSTM1Q13501 440 aa6.9□□□□□ -1.3
VPS13D-211ENST00000543710 ZNF66Q6ZN08 573 aa6.9□□□□□ -1.3
VPS13D-211ENST00000543710 TMED6Q8WW62 240 aa6.9□□□□□ -1.3
VPS13D-211ENST00000543710 OR10C1Q96KK4 312 aa6.9□□□□□ -1.3
VPS13D-211ENST00000543710 ELOVL5Q9NYP7 299 aa6.9□□□□□ -1.3
VPS13D-211ENST00000543710 MMP24Q9Y5R2 645 aa6.9□□□□□ -1.3
VPS13D-211ENST00000543710 TMEM202A6NGA9 273 aa6.9□□□□□ -1.3
VPS13D-211ENST00000543710 DBX1A6NMT0 343 aa6.9□□□□□ -1.3
VPS13D-211ENST00000543710 MS4A18H0YCH9 400 aa6.9□□□□□ -1.3
VPS13D-211ENST00000543710 ISLRO14498 428 aa6.9□□□□□ -1.3
VPS13D-211ENST00000543710 CCSO14618 274 aa6.9□□□□□ -1.3
VPS13D-211ENST00000543710 GDF9O60383 454 aa6.9□□□□□ -1.3
VPS13D-211ENST00000543710 HAND1O96004 215 aa6.9□□□□□ -1.3
VPS13D-211ENST00000543710 GCGP01275 180 aa6.9□□□□□ -1.3
VPS13D-211ENST00000543710 GRPP07492 148 aa6.9□□□□□ -1.3
VPS13D-211ENST00000543710 PMCHP20382 165 aa6.9□□□□□ -1.3
VPS13D-211ENST00000543710 BCL3P20749 454 aa6.9□□□□□ -1.3
VPS13D-211ENST00000543710 HAAOP46952 286 aa6.9□□□□□ -1.3
VPS13D-211ENST00000543710 AMTP48728 403 aa6.9□□□□□ -1.3
VPS13D-211ENST00000543710 ZNF750Q32MQ0 723 aa6.9□□□□□ -1.3
VPS13D-211ENST00000543710 MS4A18Q3C1V0 323 aa6.9□□□□□ -1.3
VPS13D-211ENST00000543710 CLEC9AQ6UXN8 241 aa6.9□□□□□ -1.3
VPS13D-211ENST00000543710 BCDIN3DQ7Z5W3 292 aaKnown RBP6.9□□□□□ -1.3
VPS13D-211ENST00000543710 HOGA1Q86XE5 327 aa6.9□□□□□ -1.3
VPS13D-211ENST00000543710 MRPL24Q96A35 216 aaKnown RBP6.9□□□□□ -1.3
VPS13D-211ENST00000543710 UBE2L5PA0A1B0GUS4 154 aa6.9□□□□□ -1.31
VPS13D-211ENST00000543710 MAP1LC3B2A6NCE7 125 aa6.9□□□□□ -1.31
VPS13D-211ENST00000543710 FAM24AA6NFZ4 105 aa6.9□□□□□ -1.31
VPS13D-211ENST00000543710 NPIPB13A6NJU9 1138 aa6.9□□□□□ -1.31
VPS13D-211ENST00000543710 NPIPB4C9JG80 1138 aa6.9□□□□□ -1.31
VPS13D-211ENST00000543710 NRG2O14511 850 aaPredicted RBP6.9□□□□□ -1.31
VPS13D-211ENST00000543710 LANCL1O43813 399 aa6.9□□□□□ -1.31
VPS13D-211ENST00000543710 OR5G3P0C626 314 aa6.9□□□□□ -1.31
VPS13D-211ENST00000543710 SULT1A1P50225 295 aa6.9□□□□□ -1.31
VPS13D-211ENST00000543710 FAM3AP98173 230 aa6.9□□□□□ -1.31
VPS13D-211ENST00000543710 PRDX4Q13162 271 aa6.9□□□□□ -1.31
VPS13D-211ENST00000543710 KISS1Q15726 138 aa6.9□□□□□ -1.31
VPS13D-211ENST00000543710 Q5PR19 223 aa6.9□□□□□ -1.31
VPS13D-211ENST00000543710 H1FOOQ8IZA3 346 aaPredicted RBP6.9□□□□□ -1.31
VPS13D-211ENST00000543710 CNRIP1Q96F85 164 aaPredicted RBP6.9□□□□□ -1.31
VPS13D-211ENST00000543710 FYTTD1Q96QD9 318 aaKnown RBP6.9□□□□□ -1.31
VPS13D-211ENST00000543710 MAP1LC3CQ9BXW4 147 aa6.9□□□□□ -1.31
VPS13D-211ENST00000543710 MAP1LC3BQ9GZQ8 125 aa6.9□□□□□ -1.31
VPS13D-211ENST00000543710 OR5AC2Q9NZP5 309 aa6.9□□□□□ -1.31
VPS13D-211ENST00000543710 ARL2-SNX15V9GYD0 113 aa6.9□□□□□ -1.31
VPS13D-211ENST00000543710 C7orf66A4D0T2 115 aa6.9□□□□□ -1.31
VPS13D-211ENST00000543710 CORTO00230 105 aa6.9□□□□□ -1.31
VPS13D-211ENST00000543710 ERGP11308 486 aa6.9□□□□□ -1.31
VPS13D-211ENST00000543710 ERVFC1-1P60608 527 aa6.9□□□□□ -1.31
VPS13D-211ENST00000543710 SERF2P84101 59 aa6.9□□□□□ -1.31
VPS13D-211ENST00000543710 TMEM215Q68D42 235 aa6.9□□□□□ -1.31
VPS13D-211ENST00000543710 OR2C3Q8N628 320 aa6.9□□□□□ -1.31
VPS13D-211ENST00000543710 AKR7LQ8NHP1 331 aa6.9□□□□□ -1.31
VPS13D-211ENST00000543710 RXFP4Q8TDU9 374 aa6.9□□□□□ -1.31
VPS13D-211ENST00000543710 COL11A2P13942 1736 aaPredicted RBP6.89□□□□□ -1.31
VPS13D-211ENST00000543710 TNS1Q9HBL0 1735 aaKnown RBP6.89□□□□□ -1.31
VPS13D-211ENST00000543710 CRYM-AS1A6NIL9 109 aa6.89□□□□□ -1.31
VPS13D-211ENST00000543710 TIMM23O14925 209 aa6.89□□□□□ -1.31
VPS13D-211ENST00000543710 WNT1P04628 370 aa6.89□□□□□ -1.31
VPS13D-211ENST00000543710 COX5BP10606 129 aa6.89□□□□□ -1.31
VPS13D-211ENST00000543710 ZNF83P51522 516 aa6.89□□□□□ -1.31
VPS13D-211ENST00000543710 DHRS2Q13268 280 aa6.89□□□□□ -1.31
VPS13D-211ENST00000543710 COL9A2Q14055 689 aaPredicted RBP6.89□□□□□ -1.31
VPS13D-211ENST00000543710 TBR1Q16650 682 aa6.89□□□□□ -1.31
VPS13D-211ENST00000543710 ERASQ7Z444 233 aa6.89□□□□□ -1.31
VPS13D-211ENST00000543710 MCHR2Q969V1 340 aa6.89□□□□□ -1.31
VPS13D-211ENST00000543710 ELOVL1Q9BW60 279 aa6.89□□□□□ -1.31
VPS13D-211ENST00000543710 SFXN3Q9BWM7 321 aa6.89□□□□□ -1.31
VPS13D-211ENST00000543710 VCX2Q9H322 139 aa6.89□□□□□ -1.31
VPS13D-211ENST00000543710 RPLP1P05386 114 aaKnown RBP6.89□□□□□ -1.31
VPS13D-211ENST00000543710 GABRA4P48169 554 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 74.4 ms