RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 KRTAP4-5Q9BYR2 181 aa7.12□□□□□ -1.27
USP28-205ENST00000537706 PRRG3Q9BZD7 231 aa7.12□□□□□ -1.27
USP28-205ENST00000537706 TMEM133Q9H2Q1 129 aa7.12□□□□□ -1.27
USP28-205ENST00000537706 HIPK2Q9H2X6 1198 aa7.12□□□□□ -1.27
USP28-205ENST00000537706 AMBNQ9NP70 447 aa7.12□□□□□ -1.27
USP28-205ENST00000537706 KRCC1Q9NPI7 259 aaPredicted RBP7.12□□□□□ -1.27
USP28-205ENST00000537706 HHLA2Q9UM44 414 aa7.12□□□□□ -1.27
USP28-205ENST00000537706 RFPL4AA6NLU0 287 aa7.11□□□□□ -1.27
USP28-205ENST00000537706 RFPL4AL1F8VTS6 287 aa7.11□□□□□ -1.27
USP28-205ENST00000537706 ENTPD6O75354 484 aa7.11□□□□□ -1.27
USP28-205ENST00000537706 ZNF823P16415 610 aa7.11□□□□□ -1.27
USP28-205ENST00000537706 CD36P16671 472 aa7.11□□□□□ -1.27
USP28-205ENST00000537706 VDAC1P21796 283 aa7.11□□□□□ -1.27
USP28-205ENST00000537706 OMPP47874 163 aa7.11□□□□□ -1.27
USP28-205ENST00000537706 EDDM3BP56851 147 aa7.11□□□□□ -1.27
USP28-205ENST00000537706 CDK5Q00535 292 aa7.11□□□□□ -1.27
USP28-205ENST00000537706 ZNF91Q05481 1191 aa7.11□□□□□ -1.27
USP28-205ENST00000537706 OR52W1Q6IF63 320 aa7.11□□□□□ -1.27
USP28-205ENST00000537706 TMEM65Q6PI78 240 aa7.11□□□□□ -1.27
USP28-205ENST00000537706 RASSF6Q6ZTQ3 369 aa7.11□□□□□ -1.27
USP28-205ENST00000537706 SLC16A9Q7RTY1 509 aa7.11□□□□□ -1.27
USP28-205ENST00000537706 GTSCR1Q86UQ5 136 aa7.11□□□□□ -1.27
USP28-205ENST00000537706 CROCCP3Q8IVE0 287 aa7.11□□□□□ -1.27
USP28-205ENST00000537706 TIGD4Q8IY51 512 aa7.11□□□□□ -1.27
USP28-205ENST00000537706 C5orf56Q8N8D9 126 aa7.11□□□□□ -1.27
USP28-205ENST00000537706 OR4P4Q8NGL7 312 aa7.11□□□□□ -1.27
USP28-205ENST00000537706 TRMT10AQ8TBZ6 339 aaKnown RBP7.11□□□□□ -1.27
USP28-205ENST00000537706 IL4I1Q96RQ9 567 aa7.11□□□□□ -1.27
USP28-205ENST00000537706 PLGRKTQ9HBL7 147 aa7.11□□□□□ -1.27
USP28-205ENST00000537706 DNAJC27Q9NZQ0 273 aa7.11□□□□□ -1.27
USP28-205ENST00000537706 RPL36Q9Y3U8 105 aaKnown RBP7.11□□□□□ -1.27
USP28-205ENST00000537706 hADV38S2A0JD32 116 aa7.11□□□□□ -1.27
USP28-205ENST00000537706 RENP00797 406 aa7.11□□□□□ -1.27
USP28-205ENST00000537706 TK1P04183 234 aa7.11□□□□□ -1.27
USP28-205ENST00000537706 TMEM11P17152 192 aa7.11□□□□□ -1.27
USP28-205ENST00000537706 NOS3P29474 1203 aa7.11□□□□□ -1.27
USP28-205ENST00000537706 FAM3AP98173 230 aa7.11□□□□□ -1.27
USP28-205ENST00000537706 BDH1Q02338 343 aa7.11□□□□□ -1.27
USP28-205ENST00000537706 GINS1Q14691 196 aa7.11□□□□□ -1.27
USP28-205ENST00000537706 MBOAT2Q6ZWT7 520 aa7.11□□□□□ -1.27
USP28-205ENST00000537706 GDPD3Q7L5L3 318 aa7.11□□□□□ -1.27
USP28-205ENST00000537706 IQCF1Q8N6M8 205 aa7.11□□□□□ -1.27
USP28-205ENST00000537706 OR13C2Q8NGS9 318 aa7.11□□□□□ -1.27
USP28-205ENST00000537706 BORCS5Q969J3 196 aa7.11□□□□□ -1.27
USP28-205ENST00000537706 REEP6Q96HR9 211 aa7.11□□□□□ -1.27
USP28-205ENST00000537706 FAM46AQ96IP4 442 aaKnown RBP7.11□□□□□ -1.27
USP28-205ENST00000537706 STUB1Q9UNE7 303 aa7.11□□□□□ -1.27
USP28-205ENST00000537706 VSIG4Q9Y279 399 aa7.11□□□□□ -1.27
USP28-205ENST00000537706 ABCA13Q86UQ4 5058 aa7.11□□□□□ -1.27
USP28-205ENST00000537706 FRAS1Q86XX4 4008 aa7.1□□□□□ -1.27
USP28-205ENST00000537706 IRGMA1A4Y4 181 aa7.1□□□□□ -1.27
USP28-205ENST00000537706 TOR1AO14656 332 aa7.1□□□□□ -1.27
USP28-205ENST00000537706 PRKYO43930 277 aa7.1□□□□□ -1.27
USP28-205ENST00000537706 CNIH1O95406 144 aa7.1□□□□□ -1.27
USP28-205ENST00000537706 DBTP11182 482 aaKnown RBP7.1□□□□□ -1.27
USP28-205ENST00000537706 SERPINB10P48595 397 aa7.1□□□□□ -1.27
USP28-205ENST00000537706 MEF2CQ06413 473 aaPredicted RBP7.1□□□□□ -1.27
USP28-205ENST00000537706 PRDX4Q13162 271 aa7.1□□□□□ -1.27
USP28-205ENST00000537706 RRM2BQ7LG56 351 aa7.1□□□□□ -1.27
USP28-205ENST00000537706 ABHD12Q8N2K0 398 aa7.1□□□□□ -1.27
USP28-205ENST00000537706 TCEANCQ8N8B7 351 aa7.1□□□□□ -1.27
USP28-205ENST00000537706 OR8D4Q8NGM9 314 aa7.1□□□□□ -1.27
USP28-205ENST00000537706 TMEM163Q8TC26 289 aa7.1□□□□□ -1.27
USP28-205ENST00000537706 DYNC2LI1Q8TCX1 351 aa7.1□□□□□ -1.27
USP28-205ENST00000537706 TSEN15Q8WW01 171 aaKnown RBP7.1□□□□□ -1.27
USP28-205ENST00000537706 OR5P3Q8WZ94 311 aa7.1□□□□□ -1.27
USP28-205ENST00000537706 NRIP2Q9BQI9 281 aa7.1□□□□□ -1.27
USP28-205ENST00000537706 TSSK6Q9BXA6 273 aa7.1□□□□□ -1.27
USP28-205ENST00000537706 EGLN3Q9H6Z9 239 aa7.1□□□□□ -1.27
USP28-205ENST00000537706 PNRC2Q9NPJ4 139 aaKnown RBP7.1□□□□□ -1.27
USP28-205ENST00000537706 TVP23BQ9NYZ1 205 aa7.1□□□□□ -1.27
USP28-205ENST00000537706 CYB5R1Q9UHQ9 305 aa7.1□□□□□ -1.27
USP28-205ENST00000537706 RHBDD3Q9Y3P4 386 aa7.1□□□□□ -1.27
USP28-205ENST00000537706 CDH10Q9Y6N8 788 aa7.1□□□□□ -1.27
USP28-205ENST00000537706 SNTNA6NMZ2 147 aa7.09□□□□□ -1.27
USP28-205ENST00000537706 ZNF850A8MQ14 1090 aa7.09□□□□□ -1.27
USP28-205ENST00000537706 ANXA2P07355 339 aaKnown RBP7.09□□□□□ -1.27
USP28-205ENST00000537706 SPARCP09486 303 aa7.09□□□□□ -1.27
USP28-205ENST00000537706 OR5H8P0DN80 308 aa7.09□□□□□ -1.27
USP28-205ENST00000537706 CALRP27797 417 aaKnown RBP7.09□□□□□ -1.27
USP28-205ENST00000537706 GSK3AP49840 483 aa7.09□□□□□ -1.27
USP28-205ENST00000537706 PRKXP51817 358 aa7.09□□□□□ -1.27
USP28-205ENST00000537706 NCS1P62166 190 aa7.09□□□□□ -1.27
USP28-205ENST00000537706 EFNB1P98172 346 aa7.09□□□□□ -1.27
USP28-205ENST00000537706 RUNX1Q01196 453 aa7.09□□□□□ -1.27
USP28-205ENST00000537706 ZNF829Q3KNS6 432 aaPredicted RBP7.09□□□□□ -1.27
USP28-205ENST00000537706 TIMM50Q3ZCQ8 353 aa7.09□□□□□ -1.27
USP28-205ENST00000537706 TPTE2P1Q5T6R2 138 aa7.09□□□□□ -1.27
USP28-205ENST00000537706 FAM122BQ7Z309 247 aa7.09□□□□□ -1.27
USP28-205ENST00000537706 NRMQ8IXM6 262 aa7.09□□□□□ -1.27
USP28-205ENST00000537706 ZDHHC23Q8IYP9 409 aa7.09□□□□□ -1.27
USP28-205ENST00000537706 CD177Q8N6Q3 437 aa7.09□□□□□ -1.27
USP28-205ENST00000537706 ASCC1Q8N9N2 400 aaKnown RBP7.09□□□□□ -1.27
USP28-205ENST00000537706 TMEM80Q96HE8 168 aa7.09□□□□□ -1.27
USP28-205ENST00000537706 UBE2E2Q96LR5 201 aa7.09□□□□□ -1.27
USP28-205ENST00000537706 KCNJ15Q99712 375 aa7.09□□□□□ -1.27
USP28-205ENST00000537706 MND1Q9BWT6 205 aa7.09□□□□□ -1.27
USP28-205ENST00000537706 TEX12Q9BXU0 123 aa7.09□□□□□ -1.27
USP28-205ENST00000537706 OR51J1Q9H342 316 aa7.09□□□□□ -1.27
USP28-205ENST00000537706 SRA1Q9HD15 236 aaKnown RBP7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 275.9 ms