RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 SYT7O43581 403 aa15.9■□□□□ 0.14
SQSTM1-215ENST00000514093 CCL1P22362 96 aa15.9■□□□□ 0.14
SQSTM1-215ENST00000514093 CDX1P47902 265 aaPredicted RBP15.9■□□□□ 0.14
SQSTM1-215ENST00000514093 CDC42P60953 191 aa15.9■□□□□ 0.14
SQSTM1-215ENST00000514093 CXorf66Q5JRM2 361 aaPredicted RBP15.9■□□□□ 0.14
SQSTM1-215ENST00000514093 BCDIN3DQ7Z5W3 292 aaKnown RBP15.9■□□□□ 0.14
SQSTM1-215ENST00000514093 HS3ST5Q8IZT8 346 aa15.9■□□□□ 0.14
SQSTM1-215ENST00000514093 OR9G1Q8NH87 305 aa15.9■□□□□ 0.14
SQSTM1-215ENST00000514093 COQ2Q96H96 371 aa15.9■□□□□ 0.14
SQSTM1-215ENST00000514093 HRASLS5Q96KN8 279 aa15.9■□□□□ 0.14
SQSTM1-215ENST00000514093 EXOSC4Q9NPD3 245 aaKnown RBP15.9■□□□□ 0.14
SQSTM1-215ENST00000514093 FUOMA2VDF0 154 aa15.89■□□□□ 0.13
SQSTM1-215ENST00000514093 SH2D1BO14796 132 aa15.89■□□□□ 0.13
SQSTM1-215ENST00000514093 GATBO75879 557 aaKnown RBP15.89■□□□□ 0.13
SQSTM1-215ENST00000514093 FRMD6-AS1P0C7T7 363 aa15.89■□□□□ 0.13
SQSTM1-215ENST00000514093 GPR50Q13585 617 aa15.89■□□□□ 0.13
SQSTM1-215ENST00000514093 FAM98BQ52LJ0 330 aaKnown RBP15.89■□□□□ 0.13
SQSTM1-215ENST00000514093 KRBOX4Q5JUW0 171 aa15.89■□□□□ 0.13
SQSTM1-215ENST00000514093 SPIN3Q5JUX0 258 aa15.89■□□□□ 0.13
SQSTM1-215ENST00000514093 SLC35F2Q8IXU6 374 aa15.89■□□□□ 0.13
SQSTM1-215ENST00000514093 KIRREL1Q96J84 757 aa15.89■□□□□ 0.13
SQSTM1-215ENST00000514093 CHST5Q9GZS9 411 aa15.89■□□□□ 0.13
SQSTM1-215ENST00000514093 HMG20AQ9NP66 347 aa15.89■□□□□ 0.13
SQSTM1-215ENST00000514093 PCDHB16Q9NRJ7 776 aa15.89■□□□□ 0.13
SQSTM1-215ENST00000514093 ARL8BQ9NVJ2 186 aa15.89■□□□□ 0.13
SQSTM1-215ENST00000514093 J3QR06 171 aa15.88■□□□□ 0.13
SQSTM1-215ENST00000514093 AP4M1O00189 453 aa15.88■□□□□ 0.13
SQSTM1-215ENST00000514093 CYB5AP00167 134 aa15.88■□□□□ 0.13
SQSTM1-215ENST00000514093 CST1P01037 141 aa15.88■□□□□ 0.13
SQSTM1-215ENST00000514093 PRKACGP22612 351 aa15.88■□□□□ 0.13
SQSTM1-215ENST00000514093 GPR12P47775 334 aa15.88■□□□□ 0.13
SQSTM1-215ENST00000514093 ATP1B3P54709 279 aa15.88■□□□□ 0.13
SQSTM1-215ENST00000514093 ACTR3P61158 418 aa15.88■□□□□ 0.13
SQSTM1-215ENST00000514093 C16orf89Q6UX73 402 aa15.88■□□□□ 0.13
SQSTM1-215ENST00000514093 CITED4Q96RK1 184 aa15.88■□□□□ 0.13
SQSTM1-215ENST00000514093 PPIL3Q9H2H8 161 aaKnown RBP15.88■□□□□ 0.13
SQSTM1-215ENST00000514093 ZMAT4Q9H898 229 aa15.88■□□□□ 0.13
SQSTM1-215ENST00000514093 ARGLU1Q9NWB6 273 aaPredicted RBP15.88■□□□□ 0.13
SQSTM1-215ENST00000514093 AMMECR1Q9Y4X0 333 aaPredicted RBP15.88■□□□□ 0.13
SQSTM1-215ENST00000514093 NCBP2LA6PVI3 153 aaKnown RBP15.87■□□□□ 0.13
SQSTM1-215ENST00000514093 SERPINA3P01011 423 aa15.87■□□□□ 0.13
SQSTM1-215ENST00000514093 ZNF44P15621 663 aa15.87■□□□□ 0.13
SQSTM1-215ENST00000514093 RBP2P50120 134 aa15.87■□□□□ 0.13
SQSTM1-215ENST00000514093 ATXN7L3Q14CW9 347 aaPredicted RBP15.87■□□□□ 0.13
SQSTM1-215ENST00000514093 LTC4SQ16873 150 aa15.87■□□□□ 0.13
SQSTM1-215ENST00000514093 SPATS1Q496A3 300 aa15.87■□□□□ 0.13
SQSTM1-215ENST00000514093 DHFR2Q86XF0 187 aa15.87■□□□□ 0.13
SQSTM1-215ENST00000514093 OR11H1Q8NG94 326 aa15.87■□□□□ 0.13
SQSTM1-215ENST00000514093 RFT1Q96AA3 541 aa15.87■□□□□ 0.13
SQSTM1-215ENST00000514093 ZNF556Q9HAH1 456 aa15.87■□□□□ 0.13
SQSTM1-215ENST00000514093 TAGLN3Q9UI15 199 aa15.87■□□□□ 0.13
SQSTM1-215ENST00000514093 IGHV3-72A0A0B4J1Y9 119 aa15.86■□□□□ 0.13
SQSTM1-215ENST00000514093 IGKV1-9A0A0C4DH69 117 aa15.86■□□□□ 0.13
SQSTM1-215ENST00000514093 IGKV1-12A0A0C4DH73 117 aa15.86■□□□□ 0.13
SQSTM1-215ENST00000514093 ZNF729A6NN14 1252 aaPredicted RBP15.86■□□□□ 0.13
SQSTM1-215ENST00000514093 ZNF670-ZNF695F2Z2N8 137 aa15.86■□□□□ 0.13
SQSTM1-215ENST00000514093 IGKV1D-12P01611 117 aa15.86■□□□□ 0.13
SQSTM1-215ENST00000514093 GNG10P50151 68 aa15.86■□□□□ 0.13
SQSTM1-215ENST00000514093 MTCP1P56278 107 aa15.86■□□□□ 0.13
SQSTM1-215ENST00000514093 MS4A2Q01362 244 aa15.86■□□□□ 0.13
SQSTM1-215ENST00000514093 BNIP1Q12981 228 aa15.86■□□□□ 0.13
SQSTM1-215ENST00000514093 FOXE3Q13461 319 aa15.86■□□□□ 0.13
SQSTM1-215ENST00000514093 MADCAM1Q13477 382 aa15.86■□□□□ 0.13
SQSTM1-215ENST00000514093 SSX6Q7RTT6 188 aa15.86■□□□□ 0.13
SQSTM1-215ENST00000514093 CATSPERDQ86XM0 798 aa15.86■□□□□ 0.13
SQSTM1-215ENST00000514093 YIPF7Q8N8F6 280 aa15.86■□□□□ 0.13
SQSTM1-215ENST00000514093 TEX12Q9BXU0 123 aa15.86■□□□□ 0.13
SQSTM1-215ENST00000514093 FAM107BQ9H098 131 aa15.86■□□□□ 0.13
SQSTM1-215ENST00000514093 SLC25A19Q9HC21 320 aa15.86■□□□□ 0.13
SQSTM1-215ENST00000514093 PSG11Q9UQ72 335 aa15.86■□□□□ 0.13
SQSTM1-215ENST00000514093 SIRT4Q9Y6E7 314 aaPredicted RBP15.86■□□□□ 0.13
SQSTM1-215ENST00000514093 KBTBD11-OT1A0A1B0GTJ5 212 aa15.85■□□□□ 0.13
SQSTM1-215ENST00000514093 A0A1W2PPE3 182 aa15.85■□□□□ 0.13
SQSTM1-215ENST00000514093 M0R129 80 aa15.85■□□□□ 0.13
SQSTM1-215ENST00000514093 CCRL2O00421 344 aa15.85■□□□□ 0.13
SQSTM1-215ENST00000514093 GNGT2O14610 69 aa15.85■□□□□ 0.13
SQSTM1-215ENST00000514093 PRKYO43930 277 aa15.85■□□□□ 0.13
SQSTM1-215ENST00000514093 FHL3Q13643 280 aa15.85■□□□□ 0.13
SQSTM1-215ENST00000514093 GK3PQ14409 553 aa15.85■□□□□ 0.13
SQSTM1-215ENST00000514093 RDH10Q8IZV5 341 aa15.85■□□□□ 0.13
SQSTM1-215ENST00000514093 C4orf3Q8WVX3 66 aa15.85■□□□□ 0.13
SQSTM1-215ENST00000514093 RNFT2Q96EX2 444 aa15.85■□□□□ 0.13
SQSTM1-215ENST00000514093 TBX5Q99593 518 aa15.85■□□□□ 0.13
SQSTM1-215ENST00000514093 ADI1Q9BV57 179 aa15.85■□□□□ 0.13
SQSTM1-215ENST00000514093 ABCG5Q9H222 651 aa15.85■□□□□ 0.13
SQSTM1-215ENST00000514093 ADGRL4Q9HBW9 690 aa15.85■□□□□ 0.13
SQSTM1-215ENST00000514093 SORL1Q92673 2214 aa15.84■□□□□ 0.13
SQSTM1-215ENST00000514093 ELANEP08246 267 aa15.84■□□□□ 0.13
SQSTM1-215ENST00000514093 HCKP08631 526 aa15.84■□□□□ 0.13
SQSTM1-215ENST00000514093 CGB3P0DN86 165 aa15.84■□□□□ 0.13
SQSTM1-215ENST00000514093 CGB7P0DN87 165 aa15.84■□□□□ 0.13
SQSTM1-215ENST00000514093 RAP2AP10114 183 aa15.84■□□□□ 0.13
SQSTM1-215ENST00000514093 GLP1RP43220 463 aa15.84■□□□□ 0.13
SQSTM1-215ENST00000514093 REG1BP48304 166 aa15.84■□□□□ 0.13
SQSTM1-215ENST00000514093 RAB7AP51149 207 aa15.84■□□□□ 0.13
SQSTM1-215ENST00000514093 PDZK1IP1Q13113 114 aa15.84■□□□□ 0.13
SQSTM1-215ENST00000514093 FAM27D1Q5T7N8 215 aa15.84■□□□□ 0.13
SQSTM1-215ENST00000514093 Q6P435 159 aa15.84■□□□□ 0.13
SQSTM1-215ENST00000514093 MOB3BQ86TA1 216 aa15.84■□□□□ 0.13
SQSTM1-215ENST00000514093 OR8H3Q8N146 312 aa15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 178 ms