RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 AZGP1P25311 298 aaKnown RBP5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 TGFBR2P37173 567 aa5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 POU3F4P49335 361 aa5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 RBP2P50120 134 aa5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 CCR9P51686 369 aa5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 MTCP1P56278 107 aa5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 LGALS4P56470 323 aa5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 EDDM3BP56851 147 aa5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 OR12D2P58182 307 aa5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 ZNF91Q05481 1191 aa5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 GALEQ14376 348 aa5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 ZNF273Q14593 569 aa5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 AANATQ16613 207 aa5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 ZBTB49Q6ZSB9 765 aa5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 LHFPL2Q6ZUX7 228 aa5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 GDPD3Q7L5L3 318 aa5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 SYS1Q8N2H4 156 aa5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 OR13C3Q8NGS6 347 aa5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 LINC01006Q8NI28 216 aa5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 EMG1Q92979 244 aaKnown RBP5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 SPSB1Q96BD6 273 aa5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 FGGYQ96C11 551 aa5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 LGALS12Q96DT0 336 aa5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 ADAT3Q96EY9 351 aaPredicted RBP5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 PELI1Q96FA3 418 aa5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 SNX22Q96L94 193 aa5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 Q96MT0 163 aa5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 SSX3Q99909 188 aa5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 ALG8Q9BVK2 526 aa5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 C16orf95Q9H693 158 aa5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 SEBOXQ9HB31 216 aaPredicted RBP5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 NEK6Q9HC98 313 aa5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 S100A14Q9HCY8 104 aa5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 INPP5EQ9NRR6 644 aa5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 ZMAT5Q9UDW3 170 aaKnown RBP5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 GLS2Q9UI32 602 aa5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 HHLA2Q9UM44 414 aa5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 PKD1L1Q8TDX9 2849 aa5.52□□□□□ -1.53
CCDC88A-213ENST00000476903 MGAM2Q2M2H8 2515 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 WNK1Q9H4A3 2382 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 IGKV1-9A0A0C4DH69 117 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 LOC100130705A0A1B0GUX0 176 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 hADV38S2A0JD32 116 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 TMEM212A6NML5 194 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 OR4C45A6NMZ5 311 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 C17orf98A8MV24 154 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 F8VVB4 439 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 F8VWA3 439 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 M0QZ24 198 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 ZNF737O75373 536 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 TSPAN9O75954 239 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 INMTO95050 263 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 MT-ND2P03891 347 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 ZNF728P0DKX0 622 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 BCL3P20749 454 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 GABRR1P24046 479 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 COX7A1P24310 79 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 PEX2P28328 305 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 BMXP51813 675 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 DLX6P56179 175 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 PROK1P58294 105 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 MEF2CQ06413 473 aaPredicted RBP5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 SRSF4Q08170 494 aaKnown RBP5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 RAB40BQ12829 278 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 MRPL28Q13084 256 aaKnown RBP5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 PDZK1IP1Q13113 114 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 ALKBH1Q13686 389 aaKnown RBP5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 EDDM3AQ14507 147 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 ZNF146Q15072 292 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 LRRC75BQ2VPJ9 315 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 SPIN3Q5JUX0 258 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 C16orf54Q6UWD8 224 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 ZNF782Q6ZMW2 699 aaPredicted RBP5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 Q6ZSV7 163 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 LHFPL3Q86UP9 236 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 FAM58AQ8N1B3 248 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 PQLC1Q8N2U9 271 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 C11orf42Q8N5U0 333 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 ZNF676Q8N7Q3 588 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 OR51A4Q8NGJ6 313 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 OR13D1Q8NGV5 346 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 RHOXF1Q8NHV9 184 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 PPP1R35Q8TAP8 253 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 HAVCR2Q8TDQ0 301 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 FOXRED1Q96CU9 486 aaPredicted RBP5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 ZNF714Q96N38 554 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 OPALINQ96PE5 141 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 COMMD4Q9H0A8 199 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 PPA2Q9H2U2 334 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 RHOFQ9HBH0 211 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 RAB18Q9NP72 206 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 RBFOX1Q9NWB1 397 aaKnown RBP5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 RABL2AQ9UBK7 228 aaPredicted RBP5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 AASSQ9UDR5 926 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 RPL36Q9Y3U8 105 aaKnown RBP5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 PCDHGB5Q9Y5G0 923 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 TRRAPQ9Y4A5 3859 aa5.51□□□□□ -1.53
CCDC88A-213ENST00000476903 SH2D1BO14796 132 aa5.5□□□□□ -1.53
CCDC88A-213ENST00000476903 MGST3O14880 152 aa5.5□□□□□ -1.53
CCDC88A-213ENST00000476903 KDM4BO94953 1096 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 95.6 ms