RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 KIR2DS5Q14953 304 aa4.65□□□□□ -1.66
SYNE1-220ENST00000471834 TANGO2Q6ICL3 276 aa4.65□□□□□ -1.66
SYNE1-220ENST00000471834 TMPRSS7Q7RTY8 843 aa4.65□□□□□ -1.66
SYNE1-220ENST00000471834 TMEM183AQ8IXX5 376 aa4.65□□□□□ -1.66
SYNE1-220ENST00000471834 ZNF321PQ8N8H1 164 aa4.65□□□□□ -1.66
SYNE1-220ENST00000471834 C16orf52Q8NHV5 167 aa4.65□□□□□ -1.66
SYNE1-220ENST00000471834 FAM216AQ8WUB2 273 aa4.65□□□□□ -1.66
SYNE1-220ENST00000471834 ZNF391Q9UJN7 358 aa4.65□□□□□ -1.66
SYNE1-220ENST00000471834 PITPNC1Q9UKF7 332 aa4.65□□□□□ -1.66
SYNE1-220ENST00000471834 TRAV9-1A0A075B6T8 112 aa4.65□□□□□ -1.66
SYNE1-220ENST00000471834 IGHV3-15A0A0B4J1V0 119 aa4.65□□□□□ -1.66
SYNE1-220ENST00000471834 GZMBP10144 247 aa4.65□□□□□ -1.66
SYNE1-220ENST00000471834 MGST1P10620 155 aaKnown RBP4.65□□□□□ -1.66
SYNE1-220ENST00000471834 RPL12P30050 165 aaKnown RBP4.65□□□□□ -1.66
SYNE1-220ENST00000471834 PPT1P50897 306 aa4.65□□□□□ -1.66
SYNE1-220ENST00000471834 IL13RA1P78552 427 aa4.65□□□□□ -1.66
SYNE1-220ENST00000471834 UBE2V2Q15819 145 aa4.65□□□□□ -1.66
SYNE1-220ENST00000471834 GLYATL3Q5SZD4 288 aa4.65□□□□□ -1.66
SYNE1-220ENST00000471834 TCF24Q7RTU0 167 aa4.65□□□□□ -1.66
SYNE1-220ENST00000471834 SPEM1Q8N4L4 309 aa4.65□□□□□ -1.66
SYNE1-220ENST00000471834 OR11L1Q8NGX0 322 aa4.65□□□□□ -1.66
SYNE1-220ENST00000471834 KLHDC3Q9BQ90 382 aa4.65□□□□□ -1.66
SYNE1-220ENST00000471834 CRB3Q9BUF7 120 aa4.65□□□□□ -1.66
SYNE1-220ENST00000471834 BOKQ9UMX3 212 aaPredicted RBP4.65□□□□□ -1.66
SYNE1-220ENST00000471834 COL5A1P20908 1838 aaPredicted RBP4.65□□□□□ -1.66
SYNE1-220ENST00000471834 NSG1A0A0A6YYJ2 146 aa4.65□□□□□ -1.67
SYNE1-220ENST00000471834 LOC102723971A0A1B0GUV8 181 aa4.65□□□□□ -1.67
SYNE1-220ENST00000471834 A6NIZ1 184 aa4.65□□□□□ -1.67
SYNE1-220ENST00000471834 PRR33A8MZF0 331 aa4.65□□□□□ -1.67
SYNE1-220ENST00000471834 TAGLN2P37802 199 aaKnown RBP4.65□□□□□ -1.67
SYNE1-220ENST00000471834 POLR2HP52434 150 aaKnown RBP4.65□□□□□ -1.67
SYNE1-220ENST00000471834 RAP1BP61224 184 aa4.65□□□□□ -1.67
SYNE1-220ENST00000471834 RPS18P62269 152 aaKnown RBP4.65□□□□□ -1.67
SYNE1-220ENST00000471834 CNN3Q15417 329 aaKnown RBP4.65□□□□□ -1.67
SYNE1-220ENST00000471834 PRAMEF20Q5VT98 475 aa4.65□□□□□ -1.67
SYNE1-220ENST00000471834 C1QL3Q5VWW1 255 aa4.65□□□□□ -1.67
SYNE1-220ENST00000471834 LCN10Q6JVE6 187 aa4.65□□□□□ -1.67
SYNE1-220ENST00000471834 TOMM20LQ6UXN7 152 aa4.65□□□□□ -1.67
SYNE1-220ENST00000471834 ZNF610Q8N9Z0 462 aa4.65□□□□□ -1.67
SYNE1-220ENST00000471834 RTN4RQ9BZR6 473 aa4.65□□□□□ -1.67
SYNE1-220ENST00000471834 ELOVL3Q9HB03 270 aa4.65□□□□□ -1.67
SYNE1-220ENST00000471834 CSAG2Q9Y5P2 127 aa4.65□□□□□ -1.67
SYNE1-220ENST00000471834 LY96Q9Y6Y9 160 aa4.65□□□□□ -1.67
SYNE1-220ENST00000471834 ITGB1BP1O14713 200 aa4.65□□□□□ -1.67
SYNE1-220ENST00000471834 CDC14BO60729 498 aa4.65□□□□□ -1.67
SYNE1-220ENST00000471834 CTRLP40313 264 aa4.65□□□□□ -1.67
SYNE1-220ENST00000471834 CSNK1A1P48729 337 aa4.65□□□□□ -1.67
SYNE1-220ENST00000471834 PDLIM3Q53GG5 364 aaPredicted RBP4.65□□□□□ -1.67
SYNE1-220ENST00000471834 C6orf15Q6UXA7 325 aaPredicted RBP4.65□□□□□ -1.67
SYNE1-220ENST00000471834 LINC00346Q8IVM7 164 aa4.65□□□□□ -1.67
SYNE1-220ENST00000471834 PTPMT1Q8WUK0 201 aaPredicted RBP4.65□□□□□ -1.67
SYNE1-220ENST00000471834 TMEM171Q8WVE6 324 aa4.65□□□□□ -1.67
SYNE1-220ENST00000471834 ERGIC1Q969X5 290 aa4.65□□□□□ -1.67
SYNE1-220ENST00000471834 METTL9Q9H1A3 318 aa4.65□□□□□ -1.67
SYNE1-220ENST00000471834 SDF2L1Q9HCN8 221 aa4.65□□□□□ -1.67
SYNE1-220ENST00000471834 LYRM2Q9NU23 88 aaPredicted RBP4.65□□□□□ -1.67
SYNE1-220ENST00000471834 HIF1ANQ9NWT6 349 aa4.65□□□□□ -1.67
SYNE1-220ENST00000471834 LUZP4Q9P127 313 aa4.65□□□□□ -1.67
SYNE1-220ENST00000471834 PUS1Q9Y606 427 aaKnown RBP eCLIP4.65□□□□□ -1.67
SYNE1-220ENST00000471834 ARL2-SNX15V9GYD0 113 aa4.65□□□□□ -1.67
SYNE1-220ENST00000471834 PLXND1Q9Y4D7 1925 aa4.65□□□□□ -1.67
SYNE1-220ENST00000471834 A0A1B0GTH9 108 aa4.65□□□□□ -1.67
SYNE1-220ENST00000471834 MDH2P40926 338 aaKnown RBP4.65□□□□□ -1.67
SYNE1-220ENST00000471834 CLDN6P56747 220 aa4.65□□□□□ -1.67
SYNE1-220ENST00000471834 MLF1P58340 268 aa4.65□□□□□ -1.67
SYNE1-220ENST00000471834 RPL15P61313 204 aaKnown RBP4.65□□□□□ -1.67
SYNE1-220ENST00000471834 SRPXP78539 464 aa4.65□□□□□ -1.67
SYNE1-220ENST00000471834 C1orf194Q5T5A4 169 aa4.65□□□□□ -1.67
SYNE1-220ENST00000471834 GRINAQ7Z429 371 aa4.65□□□□□ -1.67
SYNE1-220ENST00000471834 BCORP1Q8N888 145 aa4.65□□□□□ -1.67
SYNE1-220ENST00000471834 OR10G8Q8NGN5 311 aa4.65□□□□□ -1.67
SYNE1-220ENST00000471834 RLN3Q8WXF3 142 aa4.65□□□□□ -1.67
SYNE1-220ENST00000471834 RASD2Q96D21 266 aa4.65□□□□□ -1.67
SYNE1-220ENST00000471834 ADOQ96SZ5 270 aa4.65□□□□□ -1.67
SYNE1-220ENST00000471834 C20orf24Q9BUV8 137 aa4.65□□□□□ -1.67
SYNE1-220ENST00000471834 GCM1Q9NP62 436 aa4.65□□□□□ -1.67
SYNE1-220ENST00000471834 CEBPZOSA8MTT3 80 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 MS4A18H0YCH9 400 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 H0YGG7 62 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 OR2C1O95371 312 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 MRPS34P82930 218 aaKnown RBP4.64□□□□□ -1.67
SYNE1-220ENST00000471834 MS4A18Q3C1V0 323 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 TEX43Q6ZNM6 134 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 H1FOOQ8IZA3 346 aaPredicted RBP4.64□□□□□ -1.67
SYNE1-220ENST00000471834 GPR61Q9BZJ8 451 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 V9GYS6 101 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 A0A1W2PQF6 199 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 HSBP1L1C9JCN9 74 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 TNFSF11O14788 317 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 SMAD7O15105 426 aaKnown RBP4.64□□□□□ -1.67
SYNE1-220ENST00000471834 TXNL1O43396 289 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 OMGP23515 440 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 PAX9P55771 341 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 ICAM4Q14773 271 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 MARCH3Q86UD3 253 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 Q8WTZ3 238 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 C11orf52Q96A22 123 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 APOBEC3DQ96AK3 386 aaPredicted RBP4.64□□□□□ -1.67
SYNE1-220ENST00000471834 JMJD8Q96S16 334 aa4.64□□□□□ -1.67
SYNE1-220ENST00000471834 CNTD2Q9H8S5 307 aa4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms