RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 OR3A4PP47883 348 aa9.75□□□□□ -0.85
VPS52-213ENST00000461743 KCNJ3P48549 501 aa9.75□□□□□ -0.85
VPS52-213ENST00000461743 PAX5Q02548 391 aa9.75□□□□□ -0.85
VPS52-213ENST00000461743 GRK1Q15835 563 aa9.75□□□□□ -0.85
VPS52-213ENST00000461743 RGS21Q2M5E4 152 aa9.75□□□□□ -0.85
VPS52-213ENST00000461743 ACSM3Q53FZ2 586 aa9.75□□□□□ -0.85
VPS52-213ENST00000461743 C16orf87Q6PH81 154 aa9.75□□□□□ -0.85
VPS52-213ENST00000461743 RBMS3Q6XE24 437 aaKnown RBP9.75□□□□□ -0.85
VPS52-213ENST00000461743 C17orf107Q6ZR85 190 aa9.75□□□□□ -0.85
VPS52-213ENST00000461743 RNF144BQ7Z419 303 aa9.75□□□□□ -0.85
VPS52-213ENST00000461743 TMEM158Q8WZ71 300 aa9.75□□□□□ -0.85
VPS52-213ENST00000461743 FOXRED1Q96CU9 486 aaPredicted RBP9.75□□□□□ -0.85
VPS52-213ENST00000461743 MRPS24Q96EL2 167 aaKnown RBP9.75□□□□□ -0.85
VPS52-213ENST00000461743 SLITRK2Q9H156 845 aa9.75□□□□□ -0.85
VPS52-213ENST00000461743 IFT22Q9H7X7 185 aa9.75□□□□□ -0.85
VPS52-213ENST00000461743 ELL3Q9HB65 397 aaPredicted RBP9.75□□□□□ -0.85
VPS52-213ENST00000461743 TCF7L1Q9HCS4 588 aa9.75□□□□□ -0.85
VPS52-213ENST00000461743 C19orf12Q9NSK7 152 aa9.75□□□□□ -0.85
VPS52-213ENST00000461743 GHRLQ9UBU3 117 aa9.75□□□□□ -0.85
VPS52-213ENST00000461743 ZNF69Q9UC07 566 aa9.75□□□□□ -0.85
VPS52-213ENST00000461743 LINC00312Q9Y6C7 94 aa9.75□□□□□ -0.85
VPS52-213ENST00000461743 IGHV1-69DA0A0B4J2H0 117 aa9.74□□□□□ -0.85
VPS52-213ENST00000461743 CENPVL3A0A0U1RRI6 287 aa9.74□□□□□ -0.85
VPS52-213ENST00000461743 hADV38S2A0JD32 116 aa9.74□□□□□ -0.85
VPS52-213ENST00000461743 PIN1P1O15428 100 aa9.74□□□□□ -0.85
VPS52-213ENST00000461743 INMTO95050 263 aa9.74□□□□□ -0.85
VPS52-213ENST00000461743 IGHV1-69P01742 117 aa9.74□□□□□ -0.85
VPS52-213ENST00000461743 CSTBP04080 98 aaKnown RBP9.74□□□□□ -0.85
VPS52-213ENST00000461743 UBBP0CG47 229 aa9.74□□□□□ -0.85
VPS52-213ENST00000461743 ZNF44P15621 663 aa9.74□□□□□ -0.85
VPS52-213ENST00000461743 GALP22466 123 aa9.74□□□□□ -0.85
VPS52-213ENST00000461743 S100A1P23297 94 aa9.74□□□□□ -0.85
VPS52-213ENST00000461743 PRTN3P24158 256 aa9.74□□□□□ -0.85
VPS52-213ENST00000461743 OR3A1P47881 315 aa9.74□□□□□ -0.85
VPS52-213ENST00000461743 RBM11P57052 281 aaKnown RBP9.74□□□□□ -0.85
VPS52-213ENST00000461743 MPV17LQ2QL34 196 aa9.74□□□□□ -0.85
VPS52-213ENST00000461743 HSD17B12Q53GQ0 312 aa9.74□□□□□ -0.85
VPS52-213ENST00000461743 UBE2UQ5VVX9 321 aa9.74□□□□□ -0.85
VPS52-213ENST00000461743 Q6P435 159 aa9.74□□□□□ -0.85
VPS52-213ENST00000461743 LYPD6Q86Y78 171 aa9.74□□□□□ -0.85
VPS52-213ENST00000461743 PHC2Q8IXK0 858 aa9.74□□□□□ -0.85
VPS52-213ENST00000461743 OSR2Q8N2R0 312 aa9.74□□□□□ -0.85
VPS52-213ENST00000461743 JAGN1Q8N5M9 183 aa9.74□□□□□ -0.85
VPS52-213ENST00000461743 Q8N7P7 452 aa9.74□□□□□ -0.85
VPS52-213ENST00000461743 LHX4Q969G2 390 aa9.74□□□□□ -0.85
VPS52-213ENST00000461743 PRDM13Q9H4Q3 707 aa9.74□□□□□ -0.85
VPS52-213ENST00000461743 NCOR1P1Q9H4R4 102 aa9.74□□□□□ -0.85
VPS52-213ENST00000461743 NDUFB11Q9NX14 153 aa9.74□□□□□ -0.85
VPS52-213ENST00000461743 FAM90A10PA6NDY2 464 aa9.73□□□□□ -0.85
VPS52-213ENST00000461743 FAM90A18PA6NE21 464 aa9.73□□□□□ -0.85
VPS52-213ENST00000461743 FAM90A16PA6NEW6 464 aa9.73□□□□□ -0.85
VPS52-213ENST00000461743 FAM90A20PA6NIJ5 464 aa9.73□□□□□ -0.85
VPS52-213ENST00000461743 FAM90A8PA6NJQ4 464 aa9.73□□□□□ -0.85
VPS52-213ENST00000461743 FAM90A7PA6NKC0 464 aa9.73□□□□□ -0.85
VPS52-213ENST00000461743 C17orf98A8MV24 154 aa9.73□□□□□ -0.85
VPS52-213ENST00000461743 FAM90A22PA8MWA6 464 aa9.73□□□□□ -0.85
VPS52-213ENST00000461743 FAM90A12PA8MX19 464 aa9.73□□□□□ -0.85
VPS52-213ENST00000461743 FAM90A5PA8MXJ8 464 aa9.73□□□□□ -0.85
VPS52-213ENST00000461743 FAM90A23PA8MXZ1 464 aa9.73□□□□□ -0.85
VPS52-213ENST00000461743 H3BUI4 141 aa9.73□□□□□ -0.85
VPS52-213ENST00000461743 CLDN34H7C241 214 aa9.73□□□□□ -0.85
VPS52-213ENST00000461743 TRIM77I1YAP6 450 aa9.73□□□□□ -0.85
VPS52-213ENST00000461743 SIRPB1O00241 398 aa9.73□□□□□ -0.85
VPS52-213ENST00000461743 SLC33A1O00400 549 aaPredicted RBP9.73□□□□□ -0.85
VPS52-213ENST00000461743 PSPNO60542 156 aa9.73□□□□□ -0.85
VPS52-213ENST00000461743 MAS1P04201 325 aa9.73□□□□□ -0.85
VPS52-213ENST00000461743 FAM90A15PP0C7V4 464 aa9.73□□□□□ -0.85
VPS52-213ENST00000461743 FAM90A13PP0C7W8 464 aa9.73□□□□□ -0.85
VPS52-213ENST00000461743 FAM90A14PP0C7W9 464 aa9.73□□□□□ -0.85
VPS52-213ENST00000461743 FAM90A24PP0C7X0 464 aa9.73□□□□□ -0.85
VPS52-213ENST00000461743 GTF2F2P13984 249 aa9.73□□□□□ -0.85
VPS52-213ENST00000461743 JUNBP17275 347 aaPredicted RBP9.73□□□□□ -0.85
VPS52-213ENST00000461743 MAP2K4P45985 399 aa9.73□□□□□ -0.85
VPS52-213ENST00000461743 UBE2E1P51965 193 aa9.73□□□□□ -0.85
VPS52-213ENST00000461743 TMBIM6P55061 237 aa9.73□□□□□ -0.85
VPS52-213ENST00000461743 SNU13P55769 128 aaKnown RBP9.73□□□□□ -0.85
VPS52-213ENST00000461743 P2RX3P56373 397 aa9.73□□□□□ -0.85
VPS52-213ENST00000461743 EDDM3BP56851 147 aa9.73□□□□□ -0.85
VPS52-213ENST00000461743 ERVFRD-1P60508 538 aa9.73□□□□□ -0.85
VPS52-213ENST00000461743 RPS25P62851 125 aaKnown RBP9.73□□□□□ -0.85
VPS52-213ENST00000461743 EMX1Q04741 257 aaPredicted RBP9.73□□□□□ -0.85
VPS52-213ENST00000461743 GLT8D1Q68CQ7 371 aa9.73□□□□□ -0.85
VPS52-213ENST00000461743 AWAT2Q6E213 333 aa9.73□□□□□ -0.85
VPS52-213ENST00000461743 ZNF773Q6PK81 442 aa9.73□□□□□ -0.85
VPS52-213ENST00000461743 LINC00299Q6ZSB3 139 aa9.73□□□□□ -0.85
VPS52-213ENST00000461743 CEACAM19Q7Z692 300 aa9.73□□□□□ -0.85
VPS52-213ENST00000461743 TNFRSF14Q92956 283 aa9.73□□□□□ -0.85
VPS52-213ENST00000461743 ORAI1Q96D31 301 aa9.73□□□□□ -0.85
VPS52-213ENST00000461743 ZNF714Q96N38 554 aa9.73□□□□□ -0.85
VPS52-213ENST00000461743 DCUN1D5Q9BTE7 237 aa9.73□□□□□ -0.85
VPS52-213ENST00000461743 SPACA1Q9HBV2 294 aa9.73□□□□□ -0.85
VPS52-213ENST00000461743 SIRT7Q9NRC8 400 aa9.73□□□□□ -0.85
VPS52-213ENST00000461743 MRPS28Q9Y2Q9 187 aaKnown RBP9.73□□□□□ -0.85
VPS52-213ENST00000461743 UBE2J1Q9Y385 318 aaPredicted RBP9.73□□□□□ -0.85
VPS52-213ENST00000461743 SF3B6Q9Y3B4 125 aaKnown RBP9.73□□□□□ -0.85
VPS52-213ENST00000461743 A0A1W2PPK0 400 aa9.72□□□□□ -0.85
VPS52-213ENST00000461743 CCRL2O00421 344 aa9.72□□□□□ -0.85
VPS52-213ENST00000461743 DEGS1O15121 323 aa9.72□□□□□ -0.85
VPS52-213ENST00000461743 CDRT1O95170 752 aa9.72□□□□□ -0.85
VPS52-213ENST00000461743 HTR3BO95264 441 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms