RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 COA4Q9NYJ1 87 aa7.51□□□□□ -1.21
USP40-203ENST00000427112 KIAA1324LA8MWY0 1029 aaPredicted RBP7.51□□□□□ -1.21
USP40-203ENST00000427112 FGF16O43320 207 aa7.51□□□□□ -1.21
USP40-203ENST00000427112 GLB1P16278 677 aa7.51□□□□□ -1.21
USP40-203ENST00000427112 SULT1A1P50225 295 aa7.51□□□□□ -1.21
USP40-203ENST00000427112 MRPS34P82930 218 aaKnown RBP7.51□□□□□ -1.21
USP40-203ENST00000427112 LYPD6Q86Y78 171 aa7.51□□□□□ -1.21
USP40-203ENST00000427112 OR5C1Q8NGR4 320 aa7.51□□□□□ -1.21
USP40-203ENST00000427112 ST8SIA1Q92185 356 aa7.51□□□□□ -1.21
USP40-203ENST00000427112 RAB18Q9NP72 206 aa7.51□□□□□ -1.21
USP40-203ENST00000427112 SMCO4Q9NRQ5 59 aa7.51□□□□□ -1.21
USP40-203ENST00000427112 C19orf12Q9NSK7 152 aa7.51□□□□□ -1.21
USP40-203ENST00000427112 GNG13Q9P2W3 67 aa7.51□□□□□ -1.21
USP40-203ENST00000427112 ZFHX2Q9C0A1 2572 aaPredicted RBP7.5□□□□□ -1.21
USP40-203ENST00000427112 TGIF2-C20orf24A0A0A6YYL0 155 aa7.5□□□□□ -1.21
USP40-203ENST00000427112 LOC390937A0A1W2PQ73 354 aa7.5□□□□□ -1.21
USP40-203ENST00000427112 DBX1A6NMT0 343 aa7.5□□□□□ -1.21
USP40-203ENST00000427112 IFNL4K9M1U5 179 aa7.5□□□□□ -1.21
USP40-203ENST00000427112 OR2C1O95371 312 aa7.5□□□□□ -1.21
USP40-203ENST00000427112 GSTP1P09211 210 aaKnown RBP7.5□□□□□ -1.21
USP40-203ENST00000427112 TAGLN2P37802 199 aaKnown RBP7.5□□□□□ -1.21
USP40-203ENST00000427112 LINC00205P59089 165 aa7.5□□□□□ -1.21
USP40-203ENST00000427112 ENDOGQ14249 297 aaKnown RBP7.5□□□□□ -1.21
USP40-203ENST00000427112 TESK1Q15569 626 aa7.5□□□□□ -1.21
USP40-203ENST00000427112 MPV17LQ2QL34 196 aa7.5□□□□□ -1.21
USP40-203ENST00000427112 SOHLH1Q5JUK2 328 aa7.5□□□□□ -1.21
USP40-203ENST00000427112 SPINK14Q6IE38 97 aa7.5□□□□□ -1.21
USP40-203ENST00000427112 SYT13Q7L8C5 426 aa7.5□□□□□ -1.21
USP40-203ENST00000427112 SLC16A14Q7RTX9 510 aa7.5□□□□□ -1.21
USP40-203ENST00000427112 ZNF695Q8IW36 515 aa7.5□□□□□ -1.21
USP40-203ENST00000427112 EIF4E3Q8N5X7 224 aaKnown RBP7.5□□□□□ -1.21
USP40-203ENST00000427112 SUMF2Q8NBJ7 301 aa7.5□□□□□ -1.21
USP40-203ENST00000427112 OXGR1Q96P68 337 aa7.5□□□□□ -1.21
USP40-203ENST00000427112 ZNF724A8MTY0 619 aa7.5□□□□□ -1.21
USP40-203ENST00000427112 NDUFA2O43678 99 aa7.5□□□□□ -1.21
USP40-203ENST00000427112 NRASP01111 189 aa7.5□□□□□ -1.21
USP40-203ENST00000427112 TAS2R46P59540 309 aa7.5□□□□□ -1.21
USP40-203ENST00000427112 WDR25Q64LD2 544 aaPredicted RBP7.5□□□□□ -1.21
USP40-203ENST00000427112 ZNF880Q6PDB4 577 aa7.5□□□□□ -1.21
USP40-203ENST00000427112 LINC00696Q6ZRV3 163 aa7.5□□□□□ -1.21
USP40-203ENST00000427112 ARRDC1Q8N5I2 433 aa7.5□□□□□ -1.21
USP40-203ENST00000427112 GJC3Q8NFK1 279 aa7.5□□□□□ -1.21
USP40-203ENST00000427112 EDAQ92838 391 aa7.5□□□□□ -1.21
USP40-203ENST00000427112 RSG1Q9BU20 258 aa7.5□□□□□ -1.21
USP40-203ENST00000427112 SEC11CQ9BY50 192 aa7.5□□□□□ -1.21
USP40-203ENST00000427112 PRDM6Q9NQX0 595 aa7.5□□□□□ -1.21
USP40-203ENST00000427112 CCL28Q9NRJ3 127 aa7.5□□□□□ -1.21
USP40-203ENST00000427112 SLC7A10Q9NS82 523 aa7.5□□□□□ -1.21
USP40-203ENST00000427112 ZDHHC8Q9ULC8 765 aa7.5□□□□□ -1.21
USP40-203ENST00000427112 KCNS2Q9ULS6 477 aa7.5□□□□□ -1.21
USP40-203ENST00000427112 PPP1R3CQ9UQK1 317 aa7.5□□□□□ -1.21
USP40-203ENST00000427112 A0A1W2PQD3 144 aa7.5□□□□□ -1.21
USP40-203ENST00000427112 RBMXL2O75526 392 aaKnown RBP7.5□□□□□ -1.21
USP40-203ENST00000427112 DHRS3O75911 302 aa7.5□□□□□ -1.21
USP40-203ENST00000427112 CELA3AP09093 270 aa7.5□□□□□ -1.21
USP40-203ENST00000427112 PTGDSP41222 190 aa7.5□□□□□ -1.21
USP40-203ENST00000427112 RAB11AP62491 216 aa7.5□□□□□ -1.21
USP40-203ENST00000427112 DHRS7BQ6IAN0 325 aaPredicted RBP7.5□□□□□ -1.21
USP40-203ENST00000427112 SLC25A47Q6Q0C1 308 aa7.5□□□□□ -1.21
USP40-203ENST00000427112 THNSL2Q86YJ6 484 aa7.5□□□□□ -1.21
USP40-203ENST00000427112 ZNF561Q8N587 486 aa7.5□□□□□ -1.21
USP40-203ENST00000427112 ZNF441Q8N8Z8 693 aa7.5□□□□□ -1.21
USP40-203ENST00000427112 NFAM1Q8NET5 270 aaPredicted RBP7.5□□□□□ -1.21
USP40-203ENST00000427112 THRSPQ92748 146 aa7.5□□□□□ -1.21
USP40-203ENST00000427112 INTS12Q96CB8 462 aaKnown RBP7.5□□□□□ -1.21
USP40-203ENST00000427112 CDCA3Q99618 268 aaPredicted RBP7.5□□□□□ -1.21
USP40-203ENST00000427112 FAM234AQ9H0X4 552 aa7.5□□□□□ -1.21
USP40-203ENST00000427112 METTL9Q9H1A3 318 aa7.5□□□□□ -1.21
USP40-203ENST00000427112 DNAJB11Q9UBS4 358 aa7.5□□□□□ -1.21
USP40-203ENST00000427112 CACFD1Q9UGQ2 172 aa7.5□□□□□ -1.21
USP40-203ENST00000427112 IGHV5-10-1A0A0J9YXX1 117 aa7.49□□□□□ -1.21
USP40-203ENST00000427112 A0A0U1RQK1 487 aa7.49□□□□□ -1.21
USP40-203ENST00000427112 TCF21O43680 179 aa7.49□□□□□ -1.21
USP40-203ENST00000427112 CLN5O75503 358 aa7.49□□□□□ -1.21
USP40-203ENST00000427112 NGFP01138 241 aa7.49□□□□□ -1.21
USP40-203ENST00000427112 NDUFB7P17568 137 aa7.49□□□□□ -1.21
USP40-203ENST00000427112 HIST2H3PS2Q5TEC6 136 aa7.49□□□□□ -1.21
USP40-203ENST00000427112 AAED1Q7RTV5 226 aa7.49□□□□□ -1.21
USP40-203ENST00000427112 CYB561D1Q8N8Q1 229 aa7.49□□□□□ -1.21
USP40-203ENST00000427112 FRZBQ92765 325 aa7.49□□□□□ -1.21
USP40-203ENST00000427112 MAP1AP78559 2803 aaPredicted RBP7.49□□□□□ -1.21
USP40-203ENST00000427112 IGKV1D-13A0A0B4J2D9 117 aa7.49□□□□□ -1.21
USP40-203ENST00000427112 C5orf49A4QMS7 147 aa7.49□□□□□ -1.21
USP40-203ENST00000427112 CYB5BO43169 146 aa7.49□□□□□ -1.21
USP40-203ENST00000427112 CST4P01036 141 aa7.49□□□□□ -1.21
USP40-203ENST00000427112 FCGR3AP08637 254 aa7.49□□□□□ -1.21
USP40-203ENST00000427112 IGKV1-13P0DP09 117 aa7.49□□□□□ -1.21
USP40-203ENST00000427112 UBE2KP61086 200 aa7.49□□□□□ -1.21
USP40-203ENST00000427112 SSBP1Q04837 148 aaKnown RBP7.49□□□□□ -1.21
USP40-203ENST00000427112 ECH1Q13011 328 aa7.49□□□□□ -1.21
USP40-203ENST00000427112 GNMTQ14749 295 aa7.49□□□□□ -1.21
USP40-203ENST00000427112 OR8G2PQ6IF36 304 aa7.49□□□□□ -1.21
USP40-203ENST00000427112 CRIP3Q6Q6R5 217 aa7.49□□□□□ -1.21
USP40-203ENST00000427112 GAPTQ8N292 157 aa7.49□□□□□ -1.21
USP40-203ENST00000427112 PHYHIPLQ96FC7 376 aa7.49□□□□□ -1.21
USP40-203ENST00000427112 FAM212BQ9NTI7 297 aaPredicted RBP7.49□□□□□ -1.21
USP40-203ENST00000427112 CSMD1Q96PZ7 3565 aa7.49□□□□□ -1.21
USP40-203ENST00000427112 BLACEA4D250 179 aa7.49□□□□□ -1.21
USP40-203ENST00000427112 FIGNL2A6NMB9 653 aa7.49□□□□□ -1.21
USP40-203ENST00000427112 PROB1E7EW31 1015 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms