RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 ZNF774Q6NX45 483 aa15.95■□□□□ 0.14
CCDC3-201ENST00000378825 TMEM123Q8N131 208 aa15.95■□□□□ 0.14
CCDC3-201ENST00000378825 LFNGQ8NES3 379 aa15.95■□□□□ 0.14
CCDC3-201ENST00000378825 ABHD5Q8WTS1 349 aa15.95■□□□□ 0.14
CCDC3-201ENST00000378825 RNF138Q8WVD3 245 aa15.95■□□□□ 0.14
CCDC3-201ENST00000378825 MOB3AQ96BX8 217 aa15.95■□□□□ 0.14
CCDC3-201ENST00000378825 MEGF10Q96KG7 1140 aa15.95■□□□□ 0.14
CCDC3-201ENST00000378825 OR6C1Q96RD1 312 aa15.95■□□□□ 0.14
CCDC3-201ENST00000378825 CALHM2Q9HA72 323 aa15.95■□□□□ 0.14
CCDC3-201ENST00000378825 WSB1Q9Y6I7 421 aa15.95■□□□□ 0.14
CCDC3-201ENST00000378825 CACNA1EQ15878 2313 aa15.95■□□□□ 0.14
CCDC3-201ENST00000378825 DIDO1Q9BTC0 2240 aaKnown RBP15.95■□□□□ 0.14
CCDC3-201ENST00000378825 C3orf85A0A1B0GTC6 90 aa15.95■□□□□ 0.14
CCDC3-201ENST00000378825 SPINK2P20155 84 aa15.95■□□□□ 0.14
CCDC3-201ENST00000378825 NKX2-1P43699 371 aaPredicted RBP15.95■□□□□ 0.14
CCDC3-201ENST00000378825 DAZAP2Q15038 168 aaPredicted RBP15.95■□□□□ 0.14
CCDC3-201ENST00000378825 ARL6IP1Q15041 203 aa15.95■□□□□ 0.14
CCDC3-201ENST00000378825 ZNF468Q5VIY5 522 aaPredicted RBP15.95■□□□□ 0.14
CCDC3-201ENST00000378825 DMRTC2Q8IXT2 367 aaPredicted RBP15.95■□□□□ 0.14
CCDC3-201ENST00000378825 FRZBQ92765 325 aa15.95■□□□□ 0.14
CCDC3-201ENST00000378825 S100PBPQ96BU1 408 aa15.95■□□□□ 0.14
CCDC3-201ENST00000378825 SMOC1Q9H4F8 434 aa15.95■□□□□ 0.14
CCDC3-201ENST00000378825 KIAA2026Q5HYC2 2103 aa15.94■□□□□ 0.14
CCDC3-201ENST00000378825 ADAM20O43506 726 aa15.94■□□□□ 0.14
CCDC3-201ENST00000378825 FABP4P15090 132 aa15.94■□□□□ 0.14
CCDC3-201ENST00000378825 NKAIN1Q4KMZ8 207 aa15.94■□□□□ 0.14
CCDC3-201ENST00000378825 ADPRHL1Q8NDY3 354 aa15.94■□□□□ 0.14
CCDC3-201ENST00000378825 SSX3Q99909 188 aa15.94■□□□□ 0.14
CCDC3-201ENST00000378825 MPPED1O15442 326 aa15.94■□□□□ 0.14
CCDC3-201ENST00000378825 GDF9O60383 454 aa15.94■□□□□ 0.14
CCDC3-201ENST00000378825 PPYP01298 95 aa15.94■□□□□ 0.14
CCDC3-201ENST00000378825 GNRHRP30968 328 aa15.94■□□□□ 0.14
CCDC3-201ENST00000378825 TLE1Q04724 770 aa15.94■□□□□ 0.14
CCDC3-201ENST00000378825 SPIN3Q5JUX0 258 aa15.94■□□□□ 0.14
CCDC3-201ENST00000378825 RTL6Q6ICC9 239 aa15.94■□□□□ 0.14
CCDC3-201ENST00000378825 HIST3H2BBQ8N257 126 aa15.94■□□□□ 0.14
CCDC3-201ENST00000378825 FOXD3Q9UJU5 478 aaPredicted RBP15.94■□□□□ 0.14
CCDC3-201ENST00000378825 CHD3Q12873 2000 aaKnown RBP15.93■□□□□ 0.14
CCDC3-201ENST00000378825 CEP192Q8TEP8 1941 aa15.93■□□□□ 0.14
CCDC3-201ENST00000378825 A0A1B0GW64 132 aa15.93■□□□□ 0.14
CCDC3-201ENST00000378825 C3orf80F5H4A9 247 aa15.93■□□□□ 0.14
CCDC3-201ENST00000378825 DHHO43323 396 aa15.93■□□□□ 0.14
CCDC3-201ENST00000378825 TRGC1P0CF51 173 aa15.93■□□□□ 0.14
CCDC3-201ENST00000378825 DTYMKP23919 212 aa15.93■□□□□ 0.14
CCDC3-201ENST00000378825 NTF4P34130 210 aa15.93■□□□□ 0.14
CCDC3-201ENST00000378825 NPBWR2P48146 333 aa15.93■□□□□ 0.14
CCDC3-201ENST00000378825 HERV-K104P61576 105 aa15.93■□□□□ 0.14
CCDC3-201ENST00000378825 SHBQ15464 509 aa15.93■□□□□ 0.14
CCDC3-201ENST00000378825 IZUMO4Q1ZYL8 232 aa15.93■□□□□ 0.14
CCDC3-201ENST00000378825 GUSBP11Q6P575 273 aa15.93■□□□□ 0.14
CCDC3-201ENST00000378825 RASL10BQ96S79 203 aa15.93■□□□□ 0.14
CCDC3-201ENST00000378825 ANGPTL4Q9BY76 406 aa15.93■□□□□ 0.14
CCDC3-201ENST00000378825 SLC7A10Q9NS82 523 aa15.93■□□□□ 0.14
CCDC3-201ENST00000378825 TLX3O43711 291 aaPredicted RBP15.93■□□□□ 0.14
CCDC3-201ENST00000378825 LCATP04180 440 aa15.93■□□□□ 0.14
CCDC3-201ENST00000378825 OR2T2Q6IF00 324 aa15.93■□□□□ 0.14
CCDC3-201ENST00000378825 TBC1D26Q86UD7 250 aa15.93■□□□□ 0.14
CCDC3-201ENST00000378825 BORCS8Q96FH0 119 aa15.93■□□□□ 0.14
CCDC3-201ENST00000378825 KIAA1456Q9P272 454 aa15.93■□□□□ 0.14
CCDC3-201ENST00000378825 TMED3Q9Y3Q3 217 aa15.93■□□□□ 0.14
CCDC3-201ENST00000378825 PI4KAP42356 2102 aa15.92■□□□□ 0.14
CCDC3-201ENST00000378825 HSPB6O14558 160 aa15.92■□□□□ 0.14
CCDC3-201ENST00000378825 CALHM1Q8IU99 346 aa15.92■□□□□ 0.14
CCDC3-201ENST00000378825 HS3ST6Q96QI5 342 aa15.92■□□□□ 0.14
CCDC3-201ENST00000378825 SYT3Q9BQG1 590 aa15.92■□□□□ 0.14
CCDC3-201ENST00000378825 ZNF442Q9H7R0 627 aa15.92■□□□□ 0.14
CCDC3-201ENST00000378825 MRPS17Q9Y2R5 130 aaKnown RBP15.92■□□□□ 0.14
CCDC3-201ENST00000378825 TRDCB7Z8K6 153 aa15.92■□□□□ 0.14
CCDC3-201ENST00000378825 PITX3O75364 302 aa15.92■□□□□ 0.14
CCDC3-201ENST00000378825 OR7C1O76099 320 aaPredicted RBP15.92■□□□□ 0.14
CCDC3-201ENST00000378825 F10P00742 488 aa15.92■□□□□ 0.14
CCDC3-201ENST00000378825 MSX1P28360 303 aa15.92■□□□□ 0.14
CCDC3-201ENST00000378825 RBP2P50120 134 aa15.92■□□□□ 0.14
CCDC3-201ENST00000378825 ZNF266Q14584 549 aa15.92■□□□□ 0.14
CCDC3-201ENST00000378825 OSR2Q8N2R0 312 aa15.92■□□□□ 0.14
CCDC3-201ENST00000378825 CLDND2Q8NHS1 167 aa15.92■□□□□ 0.14
CCDC3-201ENST00000378825 ZNF286AQ9HBT8 521 aa15.92■□□□□ 0.14
CCDC3-201ENST00000378825 UBE2J1Q9Y385 318 aaPredicted RBP15.92■□□□□ 0.14
CCDC3-201ENST00000378825 IGKV1D-13A0A0B4J2D9 117 aa15.91■□□□□ 0.14
CCDC3-201ENST00000378825 IGKV1-13P0DP09 117 aa15.91■□□□□ 0.14
CCDC3-201ENST00000378825 HIST1H1BP16401 226 aaKnown RBP15.91■□□□□ 0.14
CCDC3-201ENST00000378825 RPL23AP62750 156 aaKnown RBP15.91■□□□□ 0.14
CCDC3-201ENST00000378825 H3F3AP84243 136 aa15.91■□□□□ 0.14
CCDC3-201ENST00000378825 SP5Q6BEB4 398 aaPredicted RBP15.91■□□□□ 0.14
CCDC3-201ENST00000378825 RHBDD2Q6NTF9 364 aa15.91■□□□□ 0.14
CCDC3-201ENST00000378825 ULBP2Q9BZM5 246 aa15.91■□□□□ 0.14
CCDC3-201ENST00000378825 TMEM222Q9H0R3 208 aa15.91■□□□□ 0.14
CCDC3-201ENST00000378825 SEC14L6B5MCN3 397 aa15.91■□□□□ 0.14
CCDC3-201ENST00000378825 TERTO14746 1132 aaKnown RBP15.91■□□□□ 0.14
CCDC3-201ENST00000378825 PPP1R2P9O14990 202 aa15.91■□□□□ 0.14
CCDC3-201ENST00000378825 ZNF818PQ6ZRF7 136 aa15.91■□□□□ 0.14
CCDC3-201ENST00000378825 TVP23CQ96ET8 276 aa15.91■□□□□ 0.14
CCDC3-201ENST00000378825 NIPSNAP3BQ9BS92 247 aa15.91■□□□□ 0.14
CCDC3-201ENST00000378825 GNG13Q9P2W3 67 aa15.91■□□□□ 0.14
CCDC3-201ENST00000378825 SCRG1O75711 98 aa15.9■□□□□ 0.14
CCDC3-201ENST00000378825 HLA-HP01893 362 aa15.9■□□□□ 0.14
CCDC3-201ENST00000378825 HIST1H3AP68431 136 aa15.9■□□□□ 0.14
CCDC3-201ENST00000378825 MPV17LQ2QL34 196 aa15.9■□□□□ 0.14
CCDC3-201ENST00000378825 C10orf128Q5T292 105 aa15.9■□□□□ 0.14
CCDC3-201ENST00000378825 HIST2H3PS2Q5TEC6 136 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms