RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 CD37P11049 281 aa12.45□□□□□ -0.42
NUP54-213ENST00000513352 SNRPBP14678 240 aaKnown RBP12.45□□□□□ -0.42
NUP54-213ENST00000513352 BLMHQ13867 455 aa12.45□□□□□ -0.42
NUP54-213ENST00000513352 TAF9Q16594 264 aa12.45□□□□□ -0.42
NUP54-213ENST00000513352 C2orf76Q3KRA6 126 aa12.45□□□□□ -0.42
NUP54-213ENST00000513352 ATAD3CQ5T2N8 411 aa12.45□□□□□ -0.42
NUP54-213ENST00000513352 WDR25Q64LD2 544 aaPredicted RBP12.45□□□□□ -0.42
NUP54-213ENST00000513352 METAP1DQ6UB28 335 aaPredicted RBP12.45□□□□□ -0.42
NUP54-213ENST00000513352 OR2W3Q7Z3T1 314 aa12.45□□□□□ -0.42
NUP54-213ENST00000513352 FGFRL1Q8N441 504 aa12.45□□□□□ -0.42
NUP54-213ENST00000513352 OR51T1Q8NGJ9 327 aa12.45□□□□□ -0.42
NUP54-213ENST00000513352 ISOC1Q96CN7 298 aa12.45□□□□□ -0.42
NUP54-213ENST00000513352 SDSLQ96GA7 329 aa12.45□□□□□ -0.42
NUP54-213ENST00000513352 CHST6Q9GZX3 395 aa12.45□□□□□ -0.42
NUP54-213ENST00000513352 OR5V1Q9UGF6 321 aa12.45□□□□□ -0.42
NUP54-213ENST00000513352 ARHGAP32A7KAX9 2087 aa12.45□□□□□ -0.42
NUP54-213ENST00000513352 AKAP9Q99996 3911 aa12.45□□□□□ -0.42
NUP54-213ENST00000513352 TMEM272A0A1B0GTI8 110 aa12.44□□□□□ -0.42
NUP54-213ENST00000513352 B4DSR2 109 aa12.44□□□□□ -0.42
NUP54-213ENST00000513352 FOXH1O75593 365 aa12.44□□□□□ -0.42
NUP54-213ENST00000513352 ZNF16P17020 682 aaPredicted RBP12.44□□□□□ -0.42
NUP54-213ENST00000513352 CPT2P23786 658 aa12.44□□□□□ -0.42
NUP54-213ENST00000513352 NPY4RP50391 375 aa12.44□□□□□ -0.42
NUP54-213ENST00000513352 UNC119Q13432 240 aa12.44□□□□□ -0.42
NUP54-213ENST00000513352 EDDM3AQ14507 147 aa12.44□□□□□ -0.42
NUP54-213ENST00000513352 PAN3Q58A45 887 aaKnown RBP12.44□□□□□ -0.42
NUP54-213ENST00000513352 CYB5R2Q6BCY4 276 aa12.44□□□□□ -0.42
NUP54-213ENST00000513352 LINC00596Q86U02 117 aa12.44□□□□□ -0.42
NUP54-213ENST00000513352 CROCCP3Q8IVE0 287 aa12.44□□□□□ -0.42
NUP54-213ENST00000513352 LINC01356Q8N9X3 169 aa12.44□□□□□ -0.42
NUP54-213ENST00000513352 Q8NFD4 153 aa12.44□□□□□ -0.42
NUP54-213ENST00000513352 PPP1R35Q8TAP8 253 aa12.44□□□□□ -0.42
NUP54-213ENST00000513352 NEK7Q8TDX7 302 aa12.44□□□□□ -0.42
NUP54-213ENST00000513352 MRPS24Q96EL2 167 aaKnown RBP12.44□□□□□ -0.42
NUP54-213ENST00000513352 BCL7BQ9BQE9 202 aa12.44□□□□□ -0.42
NUP54-213ENST00000513352 URM1Q9BTM9 101 aaKnown RBP12.44□□□□□ -0.42
NUP54-213ENST00000513352 PPA2Q9H2U2 334 aa12.44□□□□□ -0.42
NUP54-213ENST00000513352 ING3Q9NXR8 418 aa12.44□□□□□ -0.42
NUP54-213ENST00000513352 MAB21L2Q9Y586 359 aa12.44□□□□□ -0.42
NUP54-213ENST00000513352 CEPT1Q9Y6K0 416 aa12.44□□□□□ -0.42
NUP54-213ENST00000513352 ABCA1O95477 2261 aa12.43□□□□□ -0.42
NUP54-213ENST00000513352 LOC105371242A0A075B767 164 aa12.43□□□□□ -0.42
NUP54-213ENST00000513352 TMEM14DPA8MWL7 114 aa12.43□□□□□ -0.42
NUP54-213ENST00000513352 PAHP00439 452 aa12.43□□□□□ -0.42
NUP54-213ENST00000513352 TGFAP01135 160 aa12.43□□□□□ -0.42
NUP54-213ENST00000513352 TK1P04183 234 aa12.43□□□□□ -0.42
NUP54-213ENST00000513352 MSMBP08118 114 aa12.43□□□□□ -0.42
NUP54-213ENST00000513352 ZFP36P26651 326 aaKnown RBP12.43□□□□□ -0.42
NUP54-213ENST00000513352 EDDM3BP56851 147 aa12.43□□□□□ -0.42
NUP54-213ENST00000513352 RPS27AP62979 156 aaKnown RBP12.43□□□□□ -0.42
NUP54-213ENST00000513352 SPCS2Q15005 226 aa12.43□□□□□ -0.42
NUP54-213ENST00000513352 GRK1Q15835 563 aa12.43□□□□□ -0.42
NUP54-213ENST00000513352 MPV17LQ2QL34 196 aa12.43□□□□□ -0.42
NUP54-213ENST00000513352 NHLRC3Q5JS37 347 aa12.43□□□□□ -0.42
NUP54-213ENST00000513352 Q6P435 159 aa12.43□□□□□ -0.42
NUP54-213ENST00000513352 ZNF841Q6ZN19 808 aa12.43□□□□□ -0.42
NUP54-213ENST00000513352 GDPD3Q7L5L3 318 aa12.43□□□□□ -0.42
NUP54-213ENST00000513352 CHST4Q8NCG5 386 aa12.43□□□□□ -0.42
NUP54-213ENST00000513352 LGALS14Q8TCE9 139 aa12.43□□□□□ -0.42
NUP54-213ENST00000513352 SLC25A46Q96AG3 418 aa12.43□□□□□ -0.42
NUP54-213ENST00000513352 MSI2Q96DH6 328 aaKnown RBP12.43□□□□□ -0.42
NUP54-213ENST00000513352 SNX22Q96L94 193 aa12.43□□□□□ -0.42
NUP54-213ENST00000513352 Q96M66 194 aa12.43□□□□□ -0.42
NUP54-213ENST00000513352 ZNF581Q9P0T4 197 aa12.43□□□□□ -0.42
NUP54-213ENST00000513352 ACANP16112 2415 aa12.42□□□□□ -0.42
NUP54-213ENST00000513352 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.42□□□□□ -0.424e-8■■■■■ 30.4
NUP54-213ENST00000513352 TMEM82A0PJX8 343 aa12.42□□□□□ -0.42
NUP54-213ENST00000513352 H3BMQ9 156 aa12.42□□□□□ -0.42
NUP54-213ENST00000513352 SLC33A1O00400 549 aaPredicted RBP12.42□□□□□ -0.42
NUP54-213ENST00000513352 PSPNO60542 156 aa12.42□□□□□ -0.42
NUP54-213ENST00000513352 CFPP27918 469 aa12.42□□□□□ -0.42
NUP54-213ENST00000513352 RORCP51449 518 aa12.42□□□□□ -0.42
NUP54-213ENST00000513352 QRFPP83859 136 aa12.42□□□□□ -0.42
NUP54-213ENST00000513352 PLA2G7Q13093 441 aa12.42□□□□□ -0.42
NUP54-213ENST00000513352 NKAPLQ5M9Q1 402 aa12.42□□□□□ -0.42
NUP54-213ENST00000513352 BTN2A1Q7KYR7 527 aa12.42□□□□□ -0.42
NUP54-213ENST00000513352 GLCCI1Q86VQ1 547 aa12.42□□□□□ -0.42
NUP54-213ENST00000513352 OR4S1Q8NGB4 309 aa12.42□□□□□ -0.42
NUP54-213ENST00000513352 OR5D13Q8NGL4 314 aa12.42□□□□□ -0.42
NUP54-213ENST00000513352 NEDD4LQ96PU5 975 aa12.42□□□□□ -0.42
NUP54-213ENST00000513352 NICN1Q9BSH3 213 aa12.42□□□□□ -0.42
NUP54-213ENST00000513352 TMUB1Q9BVT8 246 aa12.42□□□□□ -0.42
NUP54-213ENST00000513352 RAB22AQ9UL26 194 aa12.42□□□□□ -0.42
NUP54-213ENST00000513352 MAST4O15021 2626 aa12.42□□□□□ -0.42
NUP54-213ENST00000513352 WNK2Q9Y3S1 2297 aa12.42□□□□□ -0.42
NUP54-213ENST00000513352 CELSR1Q9NYQ6 3014 aa12.41□□□□□ -0.42
NUP54-213ENST00000513352 A0A1W2PQ09 198 aa12.41□□□□□ -0.42
NUP54-213ENST00000513352 KIAA1324LA8MWY0 1029 aaPredicted RBP12.41□□□□□ -0.42
NUP54-213ENST00000513352 A8MXK9 166 aa12.41□□□□□ -0.42
NUP54-213ENST00000513352 K7N7A8 449 aa12.41□□□□□ -0.42
NUP54-213ENST00000513352 FCN3O75636 299 aa12.41□□□□□ -0.42
NUP54-213ENST00000513352 SOX6P35712 828 aa12.41□□□□□ -0.42
NUP54-213ENST00000513352 OR3A1P47881 315 aa12.41□□□□□ -0.42
NUP54-213ENST00000513352 EFNB2P52799 333 aa12.41□□□□□ -0.42
NUP54-213ENST00000513352 ATXN7L3Q14CW9 347 aaPredicted RBP12.41□□□□□ -0.42
NUP54-213ENST00000513352 CD276Q5ZPR3 534 aa12.41□□□□□ -0.42
NUP54-213ENST00000513352 BRICD5Q6PL45 260 aa12.41□□□□□ -0.42
NUP54-213ENST00000513352 C17orf107Q6ZR85 190 aa12.41□□□□□ -0.42
NUP54-213ENST00000513352 FAM185AQ8N0U4 392 aa12.41□□□□□ -0.42
NUP54-213ENST00000513352 OR8H2Q8N162 312 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 103.1 ms