RNA–Protein interactions for RNA: ENST00000489053.1

HDAC6-232, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-232ENST00000489053 NR1H4Q96RI1 486 aaPredicted RBP7.46□□□□□ -1.22
HDAC6-232ENST00000489053 SSX3Q99909 188 aa7.46□□□□□ -1.22
HDAC6-232ENST00000489053 SLITRK2Q9H156 845 aa7.46□□□□□ -1.22
HDAC6-232ENST00000489053 PPA2Q9H2U2 334 aa7.46□□□□□ -1.22
HDAC6-232ENST00000489053 HMG20AQ9NP66 347 aa7.46□□□□□ -1.22
HDAC6-232ENST00000489053 FGF20Q9NP95 211 aaPredicted RBP7.46□□□□□ -1.22
HDAC6-232ENST00000489053 PCDHB16Q9NRJ7 776 aa7.46□□□□□ -1.22
HDAC6-232ENST00000489053 MRPS18AQ9NVS2 196 aaKnown RBP7.46□□□□□ -1.22
HDAC6-232ENST00000489053 BABAM2Q9NXR7 383 aa7.46□□□□□ -1.22
HDAC6-232ENST00000489053 ING3Q9NXR8 418 aa7.46□□□□□ -1.22
HDAC6-232ENST00000489053 DIMT1Q9UNQ2 313 aaKnown RBP7.46□□□□□ -1.22
HDAC6-232ENST00000489053 ZNF281Q9Y2X9 895 aa7.46□□□□□ -1.22
HDAC6-232ENST00000489053 RNF114Q9Y508 228 aa7.46□□□□□ -1.22
HDAC6-232ENST00000489053 MMP24Q9Y5R2 645 aa7.46□□□□□ -1.22
HDAC6-232ENST00000489053 LINC00312Q9Y6C7 94 aa7.46□□□□□ -1.22
HDAC6-232ENST00000489053 F8VVB4 439 aa7.45□□□□□ -1.22
HDAC6-232ENST00000489053 F8VWA3 439 aa7.45□□□□□ -1.22
HDAC6-232ENST00000489053 M0QZ24 198 aa7.45□□□□□ -1.22
HDAC6-232ENST00000489053 F2RL2O00254 374 aa7.45□□□□□ -1.22
HDAC6-232ENST00000489053 TOR1AO14656 332 aa7.45□□□□□ -1.22
HDAC6-232ENST00000489053 ZNF737O75373 536 aa7.45□□□□□ -1.22
HDAC6-232ENST00000489053 CLPXO76031 633 aa7.45□□□□□ -1.22
HDAC6-232ENST00000489053 KDM4BO94953 1096 aa7.45□□□□□ -1.22
HDAC6-232ENST00000489053 CSTBP04080 98 aaKnown RBP7.45□□□□□ -1.22
HDAC6-232ENST00000489053 LIMS3P0CW19 117 aa7.45□□□□□ -1.22
HDAC6-232ENST00000489053 LIMS4P0CW20 117 aa7.45□□□□□ -1.22
HDAC6-232ENST00000489053 GABRA5P31644 462 aa7.45□□□□□ -1.22
HDAC6-232ENST00000489053 CAPGP40121 348 aa7.45□□□□□ -1.22
HDAC6-232ENST00000489053 MTNR1BP49286 362 aa7.45□□□□□ -1.22
HDAC6-232ENST00000489053 ETV1P50549 477 aa7.45□□□□□ -1.22
HDAC6-232ENST00000489053 P2RX3P56373 397 aa7.45□□□□□ -1.22
HDAC6-232ENST00000489053 TAS2R43P59537 309 aa7.45□□□□□ -1.22
HDAC6-232ENST00000489053 ZNF146Q15072 292 aa7.45□□□□□ -1.22
HDAC6-232ENST00000489053 CDK5R1Q15078 307 aa7.45□□□□□ -1.22
HDAC6-232ENST00000489053 FAM189A2Q15884 450 aa7.45□□□□□ -1.22
HDAC6-232ENST00000489053 OR52W1Q6IF63 320 aa7.45□□□□□ -1.22
HDAC6-232ENST00000489053 PARP16Q8N5Y8 322 aa7.45□□□□□ -1.22
HDAC6-232ENST00000489053 OR4D6Q8NGJ1 314 aa7.45□□□□□ -1.22
HDAC6-232ENST00000489053 TAF15Q92804 592 aaKnown RBP eCLIP7.45□□□□□ -1.22
HDAC6-232ENST00000489053 TNFRSF14Q92956 283 aa7.45□□□□□ -1.22
HDAC6-232ENST00000489053 TMEM106AQ96A25 262 aa7.45□□□□□ -1.22
HDAC6-232ENST00000489053 NKX3-1Q99801 234 aaPredicted RBP7.45□□□□□ -1.22
HDAC6-232ENST00000489053 JAM3Q9BX67 310 aa7.45□□□□□ -1.22
HDAC6-232ENST00000489053 NPFFR1Q9GZQ6 430 aa7.45□□□□□ -1.22
HDAC6-232ENST00000489053 PAK1IP1Q9NWT1 392 aaPredicted RBP7.45□□□□□ -1.22
HDAC6-232ENST00000489053 IL36RNQ9UBH0 155 aa7.45□□□□□ -1.22
HDAC6-232ENST00000489053 PITPNC1Q9UKF7 332 aa7.45□□□□□ -1.22
HDAC6-232ENST00000489053 ERGIC3Q9Y282 383 aa7.45□□□□□ -1.22
HDAC6-232ENST00000489053 TBL2Q9Y4P3 447 aaKnown RBP7.45□□□□□ -1.22
HDAC6-232ENST00000489053 SESN1Q9Y6P5 492 aa7.45□□□□□ -1.22
HDAC6-232ENST00000489053 HSPE1-MOB4S4R3N1 261 aa7.45□□□□□ -1.22
HDAC6-232ENST00000489053 TMEM82A0PJX8 343 aa7.44□□□□□ -1.22
HDAC6-232ENST00000489053 C17orf98A8MV24 154 aa7.44□□□□□ -1.22
HDAC6-232ENST00000489053 E9PI62 339 aa7.44□□□□□ -1.22
HDAC6-232ENST00000489053 E9PQ18 207 aa7.44□□□□□ -1.22
HDAC6-232ENST00000489053 HSPB6O14558 160 aa7.44□□□□□ -1.22
HDAC6-232ENST00000489053 TIMM23O14925 209 aa7.44□□□□□ -1.22
HDAC6-232ENST00000489053 WBP4O75554 376 aaKnown RBP7.44□□□□□ -1.22
HDAC6-232ENST00000489053 OR2H2O95918 312 aa7.44□□□□□ -1.22
HDAC6-232ENST00000489053 IGHV1-8P0DP01 117 aa7.44□□□□□ -1.22
HDAC6-232ENST00000489053 PTGFRP43088 359 aa7.44□□□□□ -1.22
HDAC6-232ENST00000489053 GTF2A1P52655 376 aaPredicted RBP7.44□□□□□ -1.22
HDAC6-232ENST00000489053 SLC34A1Q06495 639 aa7.44□□□□□ -1.22
HDAC6-232ENST00000489053 ST3GAL4Q11206 333 aa7.44□□□□□ -1.22
HDAC6-232ENST00000489053 RIPK1Q13546 671 aa7.44□□□□□ -1.22
HDAC6-232ENST00000489053 SSX2Q16385 188 aa7.44□□□□□ -1.22
HDAC6-232ENST00000489053 TAF9Q16594 264 aa7.44□□□□□ -1.22
HDAC6-232ENST00000489053 AANATQ16613 207 aa7.44□□□□□ -1.22
HDAC6-232ENST00000489053 PAN3Q58A45 887 aaKnown RBP7.44□□□□□ -1.22
HDAC6-232ENST00000489053 KRBOX4Q5JUW0 171 aa7.44□□□□□ -1.22
HDAC6-232ENST00000489053 DDI2Q5TDH0 399 aa7.44□□□□□ -1.22
HDAC6-232ENST00000489053 OR2G6Q5TZ20 316 aa7.44□□□□□ -1.22
HDAC6-232ENST00000489053 LIAT1Q6ZQX7 453 aa7.44□□□□□ -1.22
HDAC6-232ENST00000489053 TPRX1Q8N7U7 411 aa7.44□□□□□ -1.22
HDAC6-232ENST00000489053 BPIFB6Q8NFQ5 453 aa7.44□□□□□ -1.22
HDAC6-232ENST00000489053 OR4S1Q8NGB4 309 aa7.44□□□□□ -1.22
HDAC6-232ENST00000489053 OR52N1Q8NH53 320 aa7.44□□□□□ -1.22
HDAC6-232ENST00000489053 RPS4Y2Q8TD47 263 aa7.44□□□□□ -1.22
HDAC6-232ENST00000489053 NEK7Q8TDX7 302 aa7.44□□□□□ -1.22
HDAC6-232ENST00000489053 THRSPQ92748 146 aa7.44□□□□□ -1.22
HDAC6-232ENST00000489053 SMIM19Q96E16 107 aa7.44□□□□□ -1.22
HDAC6-232ENST00000489053 BARHL1Q9BZE3 327 aa7.44□□□□□ -1.22
HDAC6-232ENST00000489053 METTL9Q9H1A3 318 aa7.44□□□□□ -1.22
HDAC6-232ENST00000489053 VCX3BQ9H321 246 aa7.44□□□□□ -1.22
HDAC6-232ENST00000489053 DCLRE1BQ9H816 532 aa7.44□□□□□ -1.22
HDAC6-232ENST00000489053 SEBOXQ9HB31 216 aaPredicted RBP7.44□□□□□ -1.22
HDAC6-232ENST00000489053 TCF7L1Q9HCS4 588 aa7.44□□□□□ -1.22
HDAC6-232ENST00000489053 TMEM138Q9NPI0 162 aa7.44□□□□□ -1.22
HDAC6-232ENST00000489053 SCN3BQ9NY72 215 aa7.44□□□□□ -1.22
HDAC6-232ENST00000489053 TAS2R4Q9NYW5 299 aa7.44□□□□□ -1.22
HDAC6-232ENST00000489053 ING4Q9UNL4 249 aa7.44□□□□□ -1.22
HDAC6-232ENST00000489053 UBE2J1Q9Y385 318 aaPredicted RBP7.44□□□□□ -1.22
HDAC6-232ENST00000489053 MEGF8Q7Z7M0 2845 aa7.43□□□□□ -1.22
HDAC6-232ENST00000489053 PNMA8CA0A1B0GUJ8 204 aa7.43□□□□□ -1.22
HDAC6-232ENST00000489053 ANKRD65E5RJM6 399 aa7.43□□□□□ -1.22
HDAC6-232ENST00000489053 H0YHG0 523 aa7.43□□□□□ -1.22
HDAC6-232ENST00000489053 H0YJX3 145 aa7.43□□□□□ -1.22
HDAC6-232ENST00000489053 PSPNO60542 156 aa7.43□□□□□ -1.22
HDAC6-232ENST00000489053 ALX3O95076 343 aa7.43□□□□□ -1.22
HDAC6-232ENST00000489053 HTR3BO95264 441 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 77.8 ms