RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 ISG20L2Q9H9L3 353 aaKnown RBP8.77□□□□□ -1.01
VPS39-208ENST00000564994 SEBOXQ9HB31 216 aaPredicted RBP8.77□□□□□ -1.01
VPS39-208ENST00000564994 TCF7L1Q9HCS4 588 aa8.77□□□□□ -1.01
VPS39-208ENST00000564994 FBLN5Q9UBX5 448 aa8.77□□□□□ -1.01
VPS39-208ENST00000564994 MYRFQ9Y2G1 1151 aa8.77□□□□□ -1.01
VPS39-208ENST00000564994 ORC6Q9Y5N6 252 aa8.77□□□□□ -1.01
VPS39-208ENST00000564994 TRBV2A0A0J9YWF9 115 aa8.76□□□□□ -1.01
VPS39-208ENST00000564994 ODF3BA8MYP8 253 aa8.76□□□□□ -1.01
VPS39-208ENST00000564994 M0QZ24 198 aa8.76□□□□□ -1.01
VPS39-208ENST00000564994 TIMM23O14925 209 aa8.76□□□□□ -1.01
VPS39-208ENST00000564994 TSPAN15O95858 294 aa8.76□□□□□ -1.01
VPS39-208ENST00000564994 IGHV1-8P0DP01 117 aa8.76□□□□□ -1.01
VPS39-208ENST00000564994 DBTP11182 482 aaKnown RBP8.76□□□□□ -1.01
VPS39-208ENST00000564994 ZNF20P17024 532 aa8.76□□□□□ -1.01
VPS39-208ENST00000564994 PRKACBP22694 351 aa8.76□□□□□ -1.01
VPS39-208ENST00000564994 RAB13P51153 203 aa8.76□□□□□ -1.01
VPS39-208ENST00000564994 CCR9P51686 369 aa8.76□□□□□ -1.01
VPS39-208ENST00000564994 EFNB2P52799 333 aa8.76□□□□□ -1.01
VPS39-208ENST00000564994 SNU13P55769 128 aaKnown RBP8.76□□□□□ -1.01
VPS39-208ENST00000564994 DEFA6Q01524 100 aa8.76□□□□□ -1.01
VPS39-208ENST00000564994 PDZK1IP1Q13113 114 aa8.76□□□□□ -1.01
VPS39-208ENST00000564994 ALKBH1Q13686 389 aaKnown RBP8.76□□□□□ -1.01
VPS39-208ENST00000564994 EDDM3AQ14507 147 aa8.76□□□□□ -1.01
VPS39-208ENST00000564994 ZNF146Q15072 292 aa8.76□□□□□ -1.01
VPS39-208ENST00000564994 ZNF626Q68DY1 528 aa8.76□□□□□ -1.01
VPS39-208ENST00000564994 HIST2H2BDQ6DRA6 164 aa8.76□□□□□ -1.01
VPS39-208ENST00000564994 CCDC121Q6ZUS5 278 aa8.76□□□□□ -1.01
VPS39-208ENST00000564994 LHFPL3Q86UP9 236 aa8.76□□□□□ -1.01
VPS39-208ENST00000564994 FAM58AQ8N1B3 248 aa8.76□□□□□ -1.01
VPS39-208ENST00000564994 OR4S1Q8NGB4 309 aa8.76□□□□□ -1.01
VPS39-208ENST00000564994 RHOXF1Q8NHV9 184 aa8.76□□□□□ -1.01
VPS39-208ENST00000564994 OPALINQ96PE5 141 aa8.76□□□□□ -1.01
VPS39-208ENST00000564994 SPACA5Q96QH8 159 aa8.76□□□□□ -1.01
VPS39-208ENST00000564994 ALG8Q9BVK2 526 aa8.76□□□□□ -1.01
VPS39-208ENST00000564994 S100A14Q9HCY8 104 aa8.76□□□□□ -1.01
VPS39-208ENST00000564994 AMBNQ9NP70 447 aa8.76□□□□□ -1.01
VPS39-208ENST00000564994 HHLA2Q9UM44 414 aa8.76□□□□□ -1.01
VPS39-208ENST00000564994 GMPPBQ9Y5P6 360 aa8.76□□□□□ -1.01
VPS39-208ENST00000564994 VGLL3A8MV65 326 aa8.75□□□□□ -1.01
VPS39-208ENST00000564994 E9PI62 339 aa8.75□□□□□ -1.01
VPS39-208ENST00000564994 RBP4P02753 201 aa8.75□□□□□ -1.01
VPS39-208ENST00000564994 MT-ND2P03891 347 aa8.75□□□□□ -1.01
VPS39-208ENST00000564994 ARG1P05089 322 aa8.75□□□□□ -1.01
VPS39-208ENST00000564994 PRKACAP17612 351 aa8.75□□□□□ -1.01
VPS39-208ENST00000564994 GABRR1P24046 479 aa8.75□□□□□ -1.01
VPS39-208ENST00000564994 GABRA5P31644 462 aa8.75□□□□□ -1.01
VPS39-208ENST00000564994 KIR2DS4P43632 304 aa8.75□□□□□ -1.01
VPS39-208ENST00000564994 OR3A1P47881 315 aa8.75□□□□□ -1.01
VPS39-208ENST00000564994 LGALS4P56470 323 aa8.75□□□□□ -1.01
VPS39-208ENST00000564994 ACTA2P62736 377 aa8.75□□□□□ -1.01
VPS39-208ENST00000564994 ACTG2P63267 376 aa8.75□□□□□ -1.01
VPS39-208ENST00000564994 MEF2CQ06413 473 aaPredicted RBP8.75□□□□□ -1.01
VPS39-208ENST00000564994 GALEQ14376 348 aa8.75□□□□□ -1.01
VPS39-208ENST00000564994 GRK1Q15835 563 aa8.75□□□□□ -1.01
VPS39-208ENST00000564994 PLA1AQ53H76 456 aa8.75□□□□□ -1.01
VPS39-208ENST00000564994 CCBE1Q6UXH8 406 aaPredicted RBP8.75□□□□□ -1.01
VPS39-208ENST00000564994 LHFPL2Q6ZUX7 228 aa8.75□□□□□ -1.01
VPS39-208ENST00000564994 Q8IYB0 196 aa8.75□□□□□ -1.01
VPS39-208ENST00000564994 OR11H6Q8NGC7 330 aa8.75□□□□□ -1.01
VPS39-208ENST00000564994 OR5D18Q8NGL1 313 aa8.75□□□□□ -1.01
VPS39-208ENST00000564994 OR13C3Q8NGS6 347 aa8.75□□□□□ -1.01
VPS39-208ENST00000564994 OR13C9Q8NGT0 318 aa8.75□□□□□ -1.01
VPS39-208ENST00000564994 APH1BQ8WW43 257 aa8.75□□□□□ -1.01
VPS39-208ENST00000564994 SPSB1Q96BD6 273 aa8.75□□□□□ -1.01
VPS39-208ENST00000564994 ZNF714Q96N38 554 aa8.75□□□□□ -1.01
VPS39-208ENST00000564994 C9orf16Q9BUW7 83 aa8.75□□□□□ -1.01
VPS39-208ENST00000564994 MMP27Q9H306 513 aa8.75□□□□□ -1.01
VPS39-208ENST00000564994 HMG20AQ9NP66 347 aa8.75□□□□□ -1.01
VPS39-208ENST00000564994 LOC100130705A0A1B0GUX0 176 aa8.74□□□□□ -1.01
VPS39-208ENST00000564994 hADV38S2A0JD32 116 aa8.74□□□□□ -1.01
VPS39-208ENST00000564994 SNTNA6NMZ2 147 aa8.74□□□□□ -1.01
VPS39-208ENST00000564994 SIRPB1O00241 398 aa8.74□□□□□ -1.01
VPS39-208ENST00000564994 MMP23AO75900 390 aa8.74□□□□□ -1.01
VPS39-208ENST00000564994 KDM4BO94953 1096 aa8.74□□□□□ -1.01
VPS39-208ENST00000564994 ZFPL1O95159 310 aa8.74□□□□□ -1.01
VPS39-208ENST00000564994 CYB5AP00167 134 aa8.74□□□□□ -1.01
VPS39-208ENST00000564994 JUNBP17275 347 aaPredicted RBP8.74□□□□□ -1.01
VPS39-208ENST00000564994 PEX2P28328 305 aa8.74□□□□□ -1.01
VPS39-208ENST00000564994 SSX2Q16385 188 aa8.74□□□□□ -1.01
VPS39-208ENST00000564994 BAIAP2L2Q6UXY1 529 aa8.74□□□□□ -1.01
VPS39-208ENST00000564994 ZBTB49Q6ZSB9 765 aa8.74□□□□□ -1.01
VPS39-208ENST00000564994 SYS1Q8N2H4 156 aa8.74□□□□□ -1.01
VPS39-208ENST00000564994 PQLC1Q8N2U9 271 aa8.74□□□□□ -1.01
VPS39-208ENST00000564994 ZNF676Q8N7Q3 588 aa8.74□□□□□ -1.01
VPS39-208ENST00000564994 OR52I1Q8NGK6 324 aa8.74□□□□□ -1.01
VPS39-208ENST00000564994 OR13D1Q8NGV5 346 aa8.74□□□□□ -1.01
VPS39-208ENST00000564994 MALSU1Q96EH3 234 aa8.74□□□□□ -1.01
VPS39-208ENST00000564994 RANBP3Q9H6Z4 567 aaPredicted RBP8.74□□□□□ -1.01
VPS39-208ENST00000564994 FAM118AQ9NWS6 357 aa8.74□□□□□ -1.01
VPS39-208ENST00000564994 ERVK13-1Q9NX77 482 aa8.74□□□□□ -1.01
VPS39-208ENST00000564994 FOXJ3Q9UPW0 622 aa8.74□□□□□ -1.01
VPS39-208ENST00000564994 GSTK1Q9Y2Q3 226 aa8.74□□□□□ -1.01
VPS39-208ENST00000564994 TBL2Q9Y4P3 447 aaKnown RBP8.74□□□□□ -1.01
VPS39-208ENST00000564994 LINC00312Q9Y6C7 94 aa8.74□□□□□ -1.01
VPS39-208ENST00000564994 PLXNB1O43157 2135 aa8.74□□□□□ -1.01
VPS39-208ENST00000564994 A6NDX4 124 aa8.73□□□□□ -1.01
VPS39-208ENST00000564994 MGST3O14880 152 aa8.73□□□□□ -1.01
VPS39-208ENST00000564994 MPZL2O60487 215 aa8.73□□□□□ -1.01
VPS39-208ENST00000564994 OR2H2O95918 312 aa8.73□□□□□ -1.01
VPS39-208ENST00000564994 LMO1P25800 156 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms