RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 TMEM108Q6UXF1 575 aa4.62□□□□□ -1.67
USP28-213ENST00000544967 DTX1Q86Y01 620 aa4.62□□□□□ -1.67
USP28-213ENST00000544967 RAB42Q8N4Z0 105 aa4.62□□□□□ -1.67
USP28-213ENST00000544967 OR8S1Q8NH09 359 aa4.62□□□□□ -1.67
USP28-213ENST00000544967 NT5CQ8TCD5 201 aa4.62□□□□□ -1.67
USP28-213ENST00000544967 ABHD5Q8WTS1 349 aa4.62□□□□□ -1.67
USP28-213ENST00000544967 ADIPOR1Q96A54 375 aa4.62□□□□□ -1.67
USP28-213ENST00000544967 TMEM230Q96A57 120 aa4.62□□□□□ -1.67
USP28-213ENST00000544967 EIF5A2Q9GZV4 153 aaKnown RBP4.62□□□□□ -1.67
USP28-213ENST00000544967 PLK3Q9H4B4 646 aa4.62□□□□□ -1.67
USP28-213ENST00000544967 LRIT1Q9P2V4 623 aa4.62□□□□□ -1.67
USP28-213ENST00000544967 PADI1Q9ULC6 663 aa4.62□□□□□ -1.67
USP28-213ENST00000544967 ZNF780BQ9Y6R6 833 aa4.62□□□□□ -1.67
USP28-213ENST00000544967 ASCC3Q8N3C0 2202 aaKnown RBP4.61□□□□□ -1.67
USP28-213ENST00000544967 TNRC6AQ8NDV7 1962 aaKnown RBP4.61□□□□□ -1.67
USP28-213ENST00000544967 EXPH5Q8NEV8 1989 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 RBFOX3A6NFN3 312 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 IFNA6P05013 189 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 CXCL1P09341 107 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 STAG3L2P0CL84 134 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 CTSEP14091 401 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 HSD11B1P28845 292 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 FCGR2CP31995 323 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 OR3A1P47881 315 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 UBE2KP61086 200 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 CCL7P80098 99 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 ACOT6Q3I5F7 207 aaPredicted RBP4.61□□□□□ -1.67
USP28-213ENST00000544967 C3orf36Q3SXR2 165 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 SPATA46Q5T0L3 261 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 MRPL2Q5T653 305 aaKnown RBP4.61□□□□□ -1.67
USP28-213ENST00000544967 CLEC18BQ6UXF7 455 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 LHFPL4Q7Z7J7 247 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 ZNF440Q8IYI8 595 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 ZNF676Q8N7Q3 588 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 CDRT4Q8N9R6 151 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 LRRC75AQ8NAA5 344 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 OR2A1Q8NGT9 310 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 HAS2Q92819 552 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 SPSB4Q96A44 273 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 C16orf58Q96GQ5 468 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 TNFRSF13CQ96RJ3 184 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 P2RX4Q99571 388 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 NIPSNAP3BQ9BS92 247 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 OR11A1Q9GZK7 315 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 HIF3AQ9Y2N7 669 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 IGLV3-12A0A075B6K2 115 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 F8WDY8 70 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 CYR61O00622 381 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 SCGB2A1O75556 95 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 TYMSP04818 313 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 NAA10P41227 235 aaPredicted RBP4.61□□□□□ -1.67
USP28-213ENST00000544967 SUMO3P55854 103 aaPredicted RBP4.61□□□□□ -1.67
USP28-213ENST00000544967 BTG2P78543 158 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 QRFPP83859 136 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 RAB32Q13637 225 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 PRICKLE4Q2TBC4 344 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 BHLHA15Q7RTS1 189 aaPredicted RBP4.61□□□□□ -1.67
USP28-213ENST00000544967 PLXDC1Q8IUK5 500 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 SFTPA2Q8IWL1 248 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 ZNF740Q8NDX6 193 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 DEFB124Q8NES8 71 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 OR10G6Q8NH81 332 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 C22orf15Q8WYQ4 148 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 DDIT4LQ96D03 193 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 RASD2Q96D21 266 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 C5orf30Q96GV9 206 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 Q96M85 177 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 OR8B4Q96RC9 309 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 AGMATQ9BSE5 352 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 PRO1933Q9H354 126 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 ZNF552Q9H707 407 aaPredicted RBP4.61□□□□□ -1.67
USP28-213ENST00000544967 CHODLQ9H9P2 273 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 ZFP30Q9Y2G7 519 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 NINQ8N4C6 2090 aa4.61□□□□□ -1.67
USP28-213ENST00000544967 SDK2Q58EX2 2172 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 TRAV27A0A087WT01 109 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 A0A0J9YY10 115 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 A0A1W2PR48 441 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 TMEM235A6NFC5 223 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 ZNF860A6NHJ4 632 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 MT-CO3P00414 261 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 KNG1P01042 644 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 MAS1P04201 325 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 SMIM10L1P0DMW3 83 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 OR10J1P30954 320 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 CEBPDP49716 269 aaPredicted RBP4.6□□□□□ -1.67
USP28-213ENST00000544967 TMEM33P57088 247 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 TAS2R46P59540 309 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 HLA-DRB3P79483 266 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 MFGE8Q08431 387 aaPredicted RBP4.6□□□□□ -1.67
USP28-213ENST00000544967 FOXF1Q12946 379 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 ZNF266Q14584 549 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 EBPQ15125 230 aaKnown RBP4.6□□□□□ -1.67
USP28-213ENST00000544967 DUSP5Q16690 384 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 PRTGQ2VWP7 1150 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 FHL5Q5TD97 284 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 TRAPPC6BQ86SZ2 158 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 LRRC25Q8N386 305 aaPredicted RBP4.6□□□□□ -1.67
USP28-213ENST00000544967 CYB561A3Q8NBI2 242 aa4.6□□□□□ -1.67
USP28-213ENST00000544967 ADAD2Q8NCV1 583 aaKnown RBP4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms