RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 OR10J1P30954 320 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 P2RX3P56373 397 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 SLC38A11Q08AI6 406 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 FA2HQ7L5A8 372 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 OR2A1Q8NGT9 310 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 KTI12Q96EK9 354 aaPredicted RBP6.93□□□□□ -1.3
VPS13D-211ENST00000543710 P2RX4Q99571 388 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 FOXB1Q99853 325 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 KLK13Q9UKR3 277 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 NTNG1Q9Y2I2 539 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 TAF1LQ8IZX4 1826 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 DHRS7CA6NNS2 312 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 FXYD1O00168 92 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 SDCBPO00560 298 aaPredicted RBP6.93□□□□□ -1.3
VPS13D-211ENST00000543710 TNFSF11O14788 317 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 CNIH1O95406 144 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 TXNDC12O95881 172 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 GAPDHP04406 335 aaKnown RBP6.93□□□□□ -1.3
VPS13D-211ENST00000543710 HNRNPA3P51991 378 aaKnown RBP6.93□□□□□ -1.3
VPS13D-211ENST00000543710 GGNBP1Q5YKI7 109 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 DGAT2L6Q6ZPD8 337 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 THNSL2Q86YJ6 484 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 BVESQ8NE79 360 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 DYNLRB2Q8TF09 96 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 FOXN4Q96NZ1 517 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 ZDHHC11Q9H8X9 412 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 ASB1Q9Y576 335 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 A6NDN8 102 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 PRRT4C9JH25 899 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 J3QW42 95 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 PDCD6O75340 191 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 CDKN2AP42771 156 aaKnown RBP6.93□□□□□ -1.3
VPS13D-211ENST00000543710 KLF9Q13886 244 aaPredicted RBP6.93□□□□□ -1.3
VPS13D-211ENST00000543710 CEBPEQ15744 281 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 GTF2H5Q6ZYL4 71 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 PRSS45Q7RTY3 260 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.93□□□□□ -1.3
VPS13D-211ENST00000543710 MRGPREQ86SM8 312 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 YRDCQ86U90 279 aaKnown RBP6.93□□□□□ -1.3
VPS13D-211ENST00000543710 HSD17B11Q8NBQ5 300 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 HEXA-AS1Q9H8Q6 139 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 ZFP64Q9NPA5 681 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 RASL12Q9NYN1 266 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 ST3GAL6Q9Y274 331 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 LIPGQ9Y5X9 500 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 AHRRA9YTQ3 701 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 AP4M1O00189 453 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 CISD3P0C7P0 127 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 HOXB1P14653 301 aaPredicted RBP6.93□□□□□ -1.3
VPS13D-211ENST00000543710 LIFP15018 202 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 PKIAP61925 76 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 HLA-DRB3P79483 266 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 CLN3Q13286 438 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 RTP5Q14D33 572 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 KIAA0040Q15053 153 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 C9orf135Q5VTT2 229 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 C16orf47Q6ZP98 133 aaPredicted RBP6.93□□□□□ -1.3
VPS13D-211ENST00000543710 ZBTB44Q8NCP5 570 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 OR4S2Q8NH73 311 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 WBP1Q96G27 269 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 OR51B6Q9H340 312 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 TUBA4BQ9H853 241 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 THYN1Q9P016 225 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 PRNDQ9UKY0 176 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 NRXN2Q9P2S2 1712 aa6.93□□□□□ -1.3
VPS13D-211ENST00000543710 POLR2IP36954 125 aaKnown RBP6.92□□□□□ -1.3
VPS13D-211ENST00000543710 PTGFRP43088 359 aa6.92□□□□□ -1.3
VPS13D-211ENST00000543710 GNG4P50150 75 aa6.92□□□□□ -1.3
VPS13D-211ENST00000543710 ZNF154Q13106 437 aa6.92□□□□□ -1.3
VPS13D-211ENST00000543710 RIGQ13278 110 aa6.92□□□□□ -1.3
VPS13D-211ENST00000543710 PABPC1L2AQ5JQF8 200 aa6.92□□□□□ -1.3
VPS13D-211ENST00000543710 MARCH1Q8TCQ1 289 aa6.92□□□□□ -1.3
VPS13D-211ENST00000543710 ARSGQ96EG1 525 aa6.92□□□□□ -1.3
VPS13D-211ENST00000543710 GINS3Q9BRX5 216 aa6.92□□□□□ -1.3
VPS13D-211ENST00000543710 NIT2Q9NQR4 276 aa6.92□□□□□ -1.3
VPS13D-211ENST00000543710 ASH2LQ9UBL3 628 aa6.92□□□□□ -1.3
VPS13D-211ENST00000543710 PLEKHB1Q9UF11 243 aaPredicted RBP6.92□□□□□ -1.3
VPS13D-211ENST00000543710 GOLT1BQ9Y3E0 138 aa6.92□□□□□ -1.3
VPS13D-211ENST00000543710 GREB1LQ9C091 1923 aaPredicted RBP6.92□□□□□ -1.3
VPS13D-211ENST00000543710 LOC285556D6RIA3 1793 aa6.92□□□□□ -1.3
VPS13D-211ENST00000543710 IGSF23A1L1A6 192 aa6.92□□□□□ -1.3
VPS13D-211ENST00000543710 C5orf49A4QMS7 147 aa6.92□□□□□ -1.3
VPS13D-211ENST00000543710 CXorf65A6NEN9 183 aa6.92□□□□□ -1.3
VPS13D-211ENST00000543710 OR2T8A6NH00 312 aa6.92□□□□□ -1.3
VPS13D-211ENST00000543710 GPR37O15354 613 aa6.92□□□□□ -1.3
VPS13D-211ENST00000543710 MPDU1O75352 247 aa6.92□□□□□ -1.3
VPS13D-211ENST00000543710 CFDP00746 253 aaPredicted RBP6.92□□□□□ -1.3
VPS13D-211ENST00000543710 HLA-DQB1P01920 261 aa6.92□□□□□ -1.3
VPS13D-211ENST00000543710 CD99P14209 185 aa6.92□□□□□ -1.3
VPS13D-211ENST00000543710 SPNP16150 400 aa6.92□□□□□ -1.3
VPS13D-211ENST00000543710 HIST1H1BP16401 226 aaKnown RBP6.92□□□□□ -1.3
VPS13D-211ENST00000543710 HLA-GP17693 338 aa6.92□□□□□ -1.3
VPS13D-211ENST00000543710 ELLP55199 621 aaPredicted RBP6.92□□□□□ -1.3
VPS13D-211ENST00000543710 FOXF1Q12946 379 aa6.92□□□□□ -1.3
VPS13D-211ENST00000543710 TMEM217Q8N7C4 229 aa6.92□□□□□ -1.3
VPS13D-211ENST00000543710 CMBLQ96DG6 245 aa6.92□□□□□ -1.3
VPS13D-211ENST00000543710 C12orf57Q99622 126 aa6.92□□□□□ -1.3
VPS13D-211ENST00000543710 ISG20L2Q9H9L3 353 aaKnown RBP6.92□□□□□ -1.3
VPS13D-211ENST00000543710 PPP1R3CQ9UQK1 317 aa6.92□□□□□ -1.3
VPS13D-211ENST00000543710 FAM90A26D6RGX4 464 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 74.4 ms