RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 ZNF75AQ96N20 296 aa14.02□□□□□ -0.16
COL4A1-204ENST00000543140 TRIB1Q96RU8 372 aa14.02□□□□□ -0.16
COL4A1-204ENST00000543140 RAB18Q9NP72 206 aa14.02□□□□□ -0.16
COL4A1-204ENST00000543140 KIF25Q9UIL4 384 aa14.02□□□□□ -0.16
COL4A1-204ENST00000543140 TEX13DA0A0J9YY54 714 aaPredicted RBP14.02□□□□□ -0.17
COL4A1-204ENST00000543140 HSPB6O14558 160 aa14.02□□□□□ -0.17
COL4A1-204ENST00000543140 OR2F2O95006 317 aa14.02□□□□□ -0.17
COL4A1-204ENST00000543140 CST4P01036 141 aa14.02□□□□□ -0.17
COL4A1-204ENST00000543140 ZNF250P15622 560 aa14.02□□□□□ -0.17
COL4A1-204ENST00000543140 OR2F1Q13607 317 aa14.02□□□□□ -0.17
COL4A1-204ENST00000543140 INO80EQ8NBZ0 244 aaPredicted RBP14.02□□□□□ -0.17
COL4A1-204ENST00000543140 MTCH1Q9NZJ7 389 aa14.02□□□□□ -0.17
COL4A1-204ENST00000543140 GSKIPQ9P0R6 139 aa14.02□□□□□ -0.17
COL4A1-204ENST00000543140 SPENQ96T58 3664 aaKnown RBP14.01□□□□□ -0.17
COL4A1-204ENST00000543140 ZSCAN5BA6NJL1 495 aa14.01□□□□□ -0.17
COL4A1-204ENST00000543140 SYNGR1O43759 233 aa14.01□□□□□ -0.17
COL4A1-204ENST00000543140 LUMP51884 338 aaPredicted RBP14.01□□□□□ -0.17
COL4A1-204ENST00000543140 TSC22D1Q15714 1073 aa14.01□□□□□ -0.17
COL4A1-204ENST00000543140 OR2T2Q6IF00 324 aa14.01□□□□□ -0.17
COL4A1-204ENST00000543140 C5orf24Q7Z6I8 188 aa14.01□□□□□ -0.17
COL4A1-204ENST00000543140 ST8SIA2Q92186 375 aa14.01□□□□□ -0.17
COL4A1-204ENST00000543140 DCUN1D4Q92564 292 aa14.01□□□□□ -0.17
COL4A1-204ENST00000543140 GMPPAQ96IJ6 420 aaPredicted RBP14.01□□□□□ -0.17
COL4A1-204ENST00000543140 HIST1H2AAQ96QV6 131 aa14.01□□□□□ -0.17
COL4A1-204ENST00000543140 ZNF471Q9BX82 626 aaPredicted RBP14.01□□□□□ -0.17
COL4A1-204ENST00000543140 NMES1Q9C002 83 aa14.01□□□□□ -0.17
COL4A1-204ENST00000543140 C12orf4Q9NQ89 552 aa14.01□□□□□ -0.17
COL4A1-204ENST00000543140 CDK2AP1O14519 115 aa14.01□□□□□ -0.17
COL4A1-204ENST00000543140 LYZL6O75951 148 aa14.01□□□□□ -0.17
COL4A1-204ENST00000543140 CRYZL1O95825 349 aa14.01□□□□□ -0.17
COL4A1-204ENST00000543140 IFNA2P01563 188 aa14.01□□□□□ -0.17
COL4A1-204ENST00000543140 FCGR2CP31995 323 aa14.01□□□□□ -0.17
COL4A1-204ENST00000543140 ZNF345Q14585 488 aa14.01□□□□□ -0.17
COL4A1-204ENST00000543140 AANATQ16613 207 aa14.01□□□□□ -0.17
COL4A1-204ENST00000543140 FAM74A1Q5RGS3 127 aa14.01□□□□□ -0.17
COL4A1-204ENST00000543140 CCDC120Q96HB5 630 aa14.01□□□□□ -0.17
COL4A1-204ENST00000543140 ZNF488Q96MN9 340 aa14.01□□□□□ -0.17
COL4A1-204ENST00000543140 RNF126Q9BV68 326 aa14.01□□□□□ -0.17
COL4A1-204ENST00000543140 ZNF175Q9Y473 711 aa14.01□□□□□ -0.17
COL4A1-204ENST00000543140 H0YIZ8 118 aa14□□□□□ -0.17
COL4A1-204ENST00000543140 PDGFAP04085 211 aa14□□□□□ -0.17
COL4A1-204ENST00000543140 HAGHLQ6PII5 290 aaPredicted RBP14□□□□□ -0.17
COL4A1-204ENST00000543140 CNEP1R1Q8N9A8 125 aa14□□□□□ -0.17
COL4A1-204ENST00000543140 SREK1IP1Q8N9Q2 155 aaPredicted RBP14□□□□□ -0.17
COL4A1-204ENST00000543140 NANOS1Q8WY41 292 aaKnown RBP14□□□□□ -0.17
COL4A1-204ENST00000543140 EXTL1Q92935 676 aa14□□□□□ -0.17
COL4A1-204ENST00000543140 ZNF286AQ9HBT8 521 aa14□□□□□ -0.17
COL4A1-204ENST00000543140 LAMA5O15230 3695 aa14□□□□□ -0.17
COL4A1-204ENST00000543140 A0A0B4J2A0 478 aa14□□□□□ -0.17
COL4A1-204ENST00000543140 ANKRD30BLA7E2S9 258 aa14□□□□□ -0.17
COL4A1-204ENST00000543140 BCL2L11O43521 198 aa14□□□□□ -0.17
COL4A1-204ENST00000543140 GLI4P10075 376 aa14□□□□□ -0.17
COL4A1-204ENST00000543140 CA6P23280 308 aa14□□□□□ -0.17
COL4A1-204ENST00000543140 RBMXP38159 391 aaKnown RBP14□□□□□ -0.17
COL4A1-204ENST00000543140 PIGPP57054 158 aa14□□□□□ -0.17
COL4A1-204ENST00000543140 CYCSP99999 105 aaKnown RBP14□□□□□ -0.17
COL4A1-204ENST00000543140 TCF15Q12870 199 aa14□□□□□ -0.17
COL4A1-204ENST00000543140 DHRS11Q6UWP2 260 aa14□□□□□ -0.17
COL4A1-204ENST00000543140 SGPP2Q8IWX5 399 aa14□□□□□ -0.17
COL4A1-204ENST00000543140 SHPKQ9UHJ6 478 aa14□□□□□ -0.17
COL4A1-204ENST00000543140 TUBAL3A6NHL2 446 aa13.99□□□□□ -0.17
COL4A1-204ENST00000543140 TRAPPC2LH3BP13 241 aa13.99□□□□□ -0.17
COL4A1-204ENST00000543140 CTSDP07339 412 aaPredicted RBP13.99□□□□□ -0.17
COL4A1-204ENST00000543140 ZNF728P0DKX0 622 aa13.99□□□□□ -0.17
COL4A1-204ENST00000543140 IGHV1-2P23083 117 aa13.99□□□□□ -0.17
COL4A1-204ENST00000543140 CALCRP30988 508 aa13.99□□□□□ -0.17
COL4A1-204ENST00000543140 SP6Q3SY56 376 aa13.99□□□□□ -0.17
COL4A1-204ENST00000543140 SMUG1Q53HV7 270 aa13.99□□□□□ -0.17
COL4A1-204ENST00000543140 RGS7BPQ6MZT1 257 aaPredicted RBP13.99□□□□□ -0.17
COL4A1-204ENST00000543140 UNQ6126/PRO20091Q6UXV3 157 aa13.99□□□□□ -0.17
COL4A1-204ENST00000543140 FOXRED2Q8IWF2 684 aa13.99□□□□□ -0.17
COL4A1-204ENST00000543140 OR5P3Q8WZ94 311 aa13.99□□□□□ -0.17
COL4A1-204ENST00000543140 RRNAD1Q96FB5 475 aaKnown RBP13.99□□□□□ -0.17
COL4A1-204ENST00000543140 CLCF1Q9UBD9 225 aa13.99□□□□□ -0.17
COL4A1-204ENST00000543140 IGHG3P01860 377 aa13.99□□□□□ -0.17
COL4A1-204ENST00000543140 IDH3GP51553 393 aaPredicted RBP13.99□□□□□ -0.17
COL4A1-204ENST00000543140 FGF12P61328 243 aa13.99□□□□□ -0.17
COL4A1-204ENST00000543140 PHLDA2Q53GA4 152 aa13.99□□□□□ -0.17
COL4A1-204ENST00000543140 IGSF11Q5DX21 431 aa13.99□□□□□ -0.17
COL4A1-204ENST00000543140 TFAP2EQ6VUC0 442 aa13.99□□□□□ -0.17
COL4A1-204ENST00000543140 SLC38A6Q8IZM9 456 aa13.99□□□□□ -0.17
COL4A1-204ENST00000543140 OR5A2Q8NGI9 324 aa13.99□□□□□ -0.17
COL4A1-204ENST00000543140 DECR2Q9NUI1 292 aa13.99□□□□□ -0.17
COL4A1-204ENST00000543140 OR5AC2Q9NZP5 309 aa13.99□□□□□ -0.17
COL4A1-204ENST00000543140 F5H0A9 414 aaPredicted RBP13.98□□□□□ -0.17
COL4A1-204ENST00000543140 LRP3O75074 770 aa13.98□□□□□ -0.17
COL4A1-204ENST00000543140 ECI1P42126 302 aa13.98□□□□□ -0.17
COL4A1-204ENST00000543140 UBA52P62987 128 aaKnown RBP13.98□□□□□ -0.17
COL4A1-204ENST00000543140 ABCA11PQ4W5N1 156 aa13.98□□□□□ -0.17
COL4A1-204ENST00000543140 NSUN5P2Q63ZY6 315 aa13.98□□□□□ -0.17
COL4A1-204ENST00000543140 GP6Q9HCN6 339 aa13.98□□□□□ -0.17
COL4A1-204ENST00000543140 SDHAF2Q9NX18 166 aa13.98□□□□□ -0.17
COL4A1-204ENST00000543140 AKAP13Q12802 2813 aa13.98□□□□□ -0.17
COL4A1-204ENST00000543140 TRAV17A0A0B4J275 112 aa13.98□□□□□ -0.17
COL4A1-204ENST00000543140 hCG_1807616A0A1W2PRN6 198 aa13.98□□□□□ -0.17
COL4A1-204ENST00000543140 CRYM-AS1A6NIL9 109 aa13.98□□□□□ -0.17
COL4A1-204ENST00000543140 PRKACAP17612 351 aa13.98□□□□□ -0.17
COL4A1-204ENST00000543140 S100A10P60903 97 aa13.98□□□□□ -0.17
COL4A1-204ENST00000543140 UBE2NP61088 152 aaKnown RBP13.98□□□□□ -0.17
COL4A1-204ENST00000543140 ERVS71-1P61550 626 aa13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms