RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 ZNF319Q9P2F9 582 aa6.36□□□□□ -1.39
LIMCH1-207ENST00000508466 THAP10Q9P2Z0 257 aaPredicted RBP6.36□□□□□ -1.39
LIMCH1-207ENST00000508466 B3GALT5Q9Y2C3 310 aa6.36□□□□□ -1.39
LIMCH1-207ENST00000508466 POMT1Q9Y6A1 747 aa6.36□□□□□ -1.39
LIMCH1-207ENST00000508466 LOC105371242A0A075B767 164 aa6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 IGKV1D-43A0A0B4J1Z2 117 aa6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 LRRC3CA6NJW4 275 aa6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 TMEM210A6NLX4 147 aa6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 ZNF850A8MQ14 1090 aa6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 ZNF891A8MT65 544 aaPredicted RBP6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 PHF1O43189 567 aaPredicted RBP6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 CLEC3AO75596 197 aa6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 SEC11BP0C7V7 166 aa6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 LHX2P50458 406 aa6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 DYNLT3P51808 116 aa6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 FOXL2P58012 376 aa6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 SLC7A9P82251 487 aa6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 EWSR1Q01844 656 aaKnown RBP eCLIP6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 ZFP36L1Q07352 338 aaKnown RBP6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 FOXF1Q12946 379 aa6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 ELAVL3Q14576 367 aaKnown RBP6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 CD226Q15762 336 aa6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 VAMP3Q15836 100 aa6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 MORN1Q5T089 497 aa6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 VN1R4Q7Z5H5 301 aa6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 DEFB128Q7Z7B8 93 aa6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 OR8B4Q96RC9 309 aa6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 TXN2Q99757 166 aa6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 VN1R3Q9BXE9 311 aa6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 ARV1Q9H2C2 271 aa6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 RRAGCQ9HB90 399 aa6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 OR52A1Q9UKL2 312 aa6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 HHLA2Q9UM44 414 aa6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 ODAMA1E959 279 aa6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 NKX2-6A6NCS4 301 aa6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 NPIPA2E9PIF3 369 aa6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 ANGPTL7O43827 346 aa6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 GDF9O60383 454 aa6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 GCGP01275 180 aa6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 SERPINA7P05543 415 aa6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 FPR2P25090 351 aa6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 HSD11B1P28845 292 aa6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 PEBP1P30086 187 aaKnown RBP6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 MAS1LP35410 378 aa6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 GALR1P47211 349 aa6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 ARF3P61204 181 aaPredicted RBP6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 ARF1P84077 181 aaKnown RBP6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 PSG6Q00889 435 aa6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 EGR4Q05215 589 aa6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 TMEM267Q0VDI3 215 aaPredicted RBP6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 KCNMB1Q16558 191 aa6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 FAM90A2PQ658T7 463 aa6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 WDR74Q6RFH5 385 aaPredicted RBP6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 Q6ZWC4 215 aa6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 DEFB132Q7Z7B7 95 aa6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 SMIM7Q9BQ49 75 aa6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 ADAM19Q9H013 955 aa6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 LPAR5Q9H1C0 372 aa6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 HIPK2Q9H2X6 1198 aa6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 GLRX2Q9NS18 164 aa6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 DKKL1Q9UK85 242 aa6.35□□□□□ -1.39
LIMCH1-207ENST00000508466 A0A1B0GU03 582 aa6.34□□□□□ -1.39
LIMCH1-207ENST00000508466 CTSVO60911 334 aa6.34□□□□□ -1.39
LIMCH1-207ENST00000508466 PLXNA2O75051 1894 aa6.34□□□□□ -1.39
LIMCH1-207ENST00000508466 RENP00797 406 aa6.34□□□□□ -1.39
LIMCH1-207ENST00000508466 BGLAPP02818 100 aa6.34□□□□□ -1.39
LIMCH1-207ENST00000508466 C8AP07357 584 aa6.34□□□□□ -1.39
LIMCH1-207ENST00000508466 CSNK1A1P48729 337 aa6.34□□□□□ -1.39
LIMCH1-207ENST00000508466 BLKP51451 505 aa6.34□□□□□ -1.39
LIMCH1-207ENST00000508466 TAS2R31P59538 309 aa6.34□□□□□ -1.39
LIMCH1-207ENST00000508466 KIAA1644Q3SXP7 199 aa6.34□□□□□ -1.39
LIMCH1-207ENST00000508466 FAM78BQ5VT40 261 aa6.34□□□□□ -1.39
LIMCH1-207ENST00000508466 Q6ZN92 141 aa6.34□□□□□ -1.39
LIMCH1-207ENST00000508466 NPAS4Q8IUM7 802 aa6.34□□□□□ -1.39
LIMCH1-207ENST00000508466 LGI3Q8N145 548 aa6.34□□□□□ -1.39
LIMCH1-207ENST00000508466 CLDND2Q8NHS1 167 aa6.34□□□□□ -1.39
LIMCH1-207ENST00000508466 CCL4L1Q8NHW4 92 aa6.34□□□□□ -1.39
LIMCH1-207ENST00000508466 FAM122AQ96E09 287 aa6.34□□□□□ -1.39
LIMCH1-207ENST00000508466 ZNF845Q96IR2 970 aaPredicted RBP6.34□□□□□ -1.39
LIMCH1-207ENST00000508466 LOXL4Q96JB6 756 aa6.34□□□□□ -1.39
LIMCH1-207ENST00000508466 SLC35E1Q96K37 410 aa6.34□□□□□ -1.39
LIMCH1-207ENST00000508466 C1orf123Q9NWV4 160 aa6.34□□□□□ -1.39
LIMCH1-207ENST00000508466 MED29Q9NX70 200 aa6.34□□□□□ -1.39
LIMCH1-207ENST00000508466 HS3ST2Q9Y278 367 aa6.34□□□□□ -1.39
LIMCH1-207ENST00000508466 INSL6Q9Y581 213 aa6.34□□□□□ -1.39
LIMCH1-207ENST00000508466 V9GYS6 101 aa6.34□□□□□ -1.39
LIMCH1-207ENST00000508466 A8MVM7 634 aa6.34□□□□□ -1.39
LIMCH1-207ENST00000508466 CCL16O15467 120 aa6.34□□□□□ -1.39
LIMCH1-207ENST00000508466 SPINT1O43278 529 aa6.34□□□□□ -1.39
LIMCH1-207ENST00000508466 OTX2P32243 289 aa6.34□□□□□ -1.39
LIMCH1-207ENST00000508466 CDAP32320 146 aa6.34□□□□□ -1.39
LIMCH1-207ENST00000508466 SLC35B1P78383 322 aa6.34□□□□□ -1.39
LIMCH1-207ENST00000508466 ZNF658BQ4V348 819 aaPredicted RBP6.34□□□□□ -1.39
LIMCH1-207ENST00000508466 ABCA11PQ4W5N1 156 aa6.34□□□□□ -1.39
LIMCH1-207ENST00000508466 COL5A1-AS1Q5SY13 56 aa6.34□□□□□ -1.39
LIMCH1-207ENST00000508466 C1orf140Q5VVS0 124 aa6.34□□□□□ -1.39
LIMCH1-207ENST00000508466 SLC16A14Q7RTX9 510 aa6.34□□□□□ -1.39
LIMCH1-207ENST00000508466 ARRDC3Q96B67 414 aa6.34□□□□□ -1.39
LIMCH1-207ENST00000508466 RBKSQ9H477 322 aa6.34□□□□□ -1.39
LIMCH1-207ENST00000508466 MCTS1Q9ULC4 181 aaKnown RBP6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms