RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 UBE2V2Q15819 145 aa5.73□□□□□ -1.49
VPS41-208ENST00000448833 FAM189A2Q15884 450 aa5.73□□□□□ -1.49
VPS41-208ENST00000448833 SSX2Q16385 188 aa5.73□□□□□ -1.49
VPS41-208ENST00000448833 FBLN7Q53RD9 439 aa5.73□□□□□ -1.49
VPS41-208ENST00000448833 DMRTC1Q5HYR2 192 aa5.73□□□□□ -1.49
VPS41-208ENST00000448833 C1orf146Q5VVC0 180 aa5.73□□□□□ -1.49
VPS41-208ENST00000448833 ZNF626Q68DY1 528 aa5.73□□□□□ -1.49
VPS41-208ENST00000448833 LHFPL2Q6ZUX7 228 aa5.73□□□□□ -1.49
VPS41-208ENST00000448833 SLC25A26Q70HW3 274 aa5.73□□□□□ -1.49
VPS41-208ENST00000448833 UTS2BQ765I0 119 aa5.73□□□□□ -1.49
VPS41-208ENST00000448833 NDUFA11Q86Y39 141 aa5.73□□□□□ -1.49
VPS41-208ENST00000448833 FAM58AQ8N1B3 248 aa5.73□□□□□ -1.49
VPS41-208ENST00000448833 Q8N2B8 174 aa5.73□□□□□ -1.49
VPS41-208ENST00000448833 KLHDC1Q8N7A1 406 aa5.73□□□□□ -1.49
VPS41-208ENST00000448833 OR10H4Q8NGA5 316 aa5.73□□□□□ -1.49
VPS41-208ENST00000448833 TRMT10AQ8TBZ6 339 aaKnown RBP5.73□□□□□ -1.49
VPS41-208ENST00000448833 ZNF596Q8TC21 504 aa5.73□□□□□ -1.49
VPS41-208ENST00000448833 HAVCR2Q8TDQ0 301 aa5.73□□□□□ -1.49
VPS41-208ENST00000448833 RORBQ92753 470 aa5.73□□□□□ -1.49
VPS41-208ENST00000448833 SPSB1Q96BD6 273 aa5.73□□□□□ -1.49
VPS41-208ENST00000448833 CPNE2Q96FN4 548 aaPredicted RBP5.73□□□□□ -1.49
VPS41-208ENST00000448833 CENPNQ96H22 339 aaPredicted RBP5.73□□□□□ -1.49
VPS41-208ENST00000448833 ZNF488Q96MN9 340 aa5.73□□□□□ -1.49
VPS41-208ENST00000448833 NKX3-1Q99801 234 aaPredicted RBP5.73□□□□□ -1.49
VPS41-208ENST00000448833 CLEC7AQ9BXN2 247 aa5.73□□□□□ -1.49
VPS41-208ENST00000448833 CADM1Q9BY67 442 aaKnown RBP5.73□□□□□ -1.49
VPS41-208ENST00000448833 TTTY10Q9BZA0 68 aa5.73□□□□□ -1.49
VPS41-208ENST00000448833 IMPAD1Q9NX62 359 aa5.73□□□□□ -1.49
VPS41-208ENST00000448833 MTCH1Q9NZJ7 389 aa5.73□□□□□ -1.49
VPS41-208ENST00000448833 TCF19Q9Y242 345 aa5.73□□□□□ -1.49
VPS41-208ENST00000448833 SESN1Q9Y6P5 492 aa5.73□□□□□ -1.49
VPS41-208ENST00000448833 CMYA5Q8N3K9 4069 aa5.72□□□□□ -1.49
VPS41-208ENST00000448833 TRGV10A0A0A0MS01 117 aa5.72□□□□□ -1.49
VPS41-208ENST00000448833 TRBV2A0A0J9YWF9 115 aa5.72□□□□□ -1.49
VPS41-208ENST00000448833 DAPL1A0PJW8 107 aa5.72□□□□□ -1.49
VPS41-208ENST00000448833 A6NDX4 124 aa5.72□□□□□ -1.49
VPS41-208ENST00000448833 A6NIN4 97 aa5.72□□□□□ -1.49
VPS41-208ENST00000448833 ODF3BA8MYP8 253 aa5.72□□□□□ -1.49
VPS41-208ENST00000448833 PRR32B1ATL7 298 aa5.72□□□□□ -1.49
VPS41-208ENST00000448833 ZNF737O75373 536 aa5.72□□□□□ -1.49
VPS41-208ENST00000448833 CIB2O75838 187 aa5.72□□□□□ -1.49
VPS41-208ENST00000448833 HAND1O96004 215 aa5.72□□□□□ -1.49
VPS41-208ENST00000448833 PIPP12273 146 aaPredicted RBP5.72□□□□□ -1.49
VPS41-208ENST00000448833 GABRR1P24046 479 aa5.72□□□□□ -1.49
VPS41-208ENST00000448833 CEBPDP49716 269 aaPredicted RBP5.72□□□□□ -1.49
VPS41-208ENST00000448833 CCR9P51686 369 aa5.72□□□□□ -1.49
VPS41-208ENST00000448833 BMXP51813 675 aa5.72□□□□□ -1.49
VPS41-208ENST00000448833 PRRX1P54821 245 aa5.72□□□□□ -1.49
VPS41-208ENST00000448833 DLX6P56179 175 aa5.72□□□□□ -1.49
VPS41-208ENST00000448833 ACTA2P62736 377 aa5.72□□□□□ -1.49
VPS41-208ENST00000448833 ACTG2P63267 376 aa5.72□□□□□ -1.49
VPS41-208ENST00000448833 PRB3Q04118 309 aaPredicted RBP5.72□□□□□ -1.49
VPS41-208ENST00000448833 MRPL28Q13084 256 aaKnown RBP5.72□□□□□ -1.49
VPS41-208ENST00000448833 ZNF273Q14593 569 aa5.72□□□□□ -1.49
VPS41-208ENST00000448833 KPNB1Q14974 876 aaKnown RBP5.72□□□□□ -1.49
VPS41-208ENST00000448833 GRK1Q15835 563 aa5.72□□□□□ -1.49
VPS41-208ENST00000448833 ODF4Q2M2E3 257 aa5.72□□□□□ -1.49
VPS41-208ENST00000448833 SLC25A30Q5SVS4 291 aa5.72□□□□□ -1.49
VPS41-208ENST00000448833 CCDC144NLQ6NUI1 221 aa5.72□□□□□ -1.49
VPS41-208ENST00000448833 FDX2Q6P4F2 183 aa5.72□□□□□ -1.49
VPS41-208ENST00000448833 ZNF782Q6ZMW2 699 aaPredicted RBP5.72□□□□□ -1.49
VPS41-208ENST00000448833 TRAPPC6BQ86SZ2 158 aa5.72□□□□□ -1.49
VPS41-208ENST00000448833 SAXO1Q8IYX7 474 aa5.72□□□□□ -1.49
VPS41-208ENST00000448833 ZNF676Q8N7Q3 588 aa5.72□□□□□ -1.49
VPS41-208ENST00000448833 CHST4Q8NCG5 386 aa5.72□□□□□ -1.49
VPS41-208ENST00000448833 PIFOQ8TCI5 191 aa5.72□□□□□ -1.49
VPS41-208ENST00000448833 C17orf50Q8WW18 174 aa5.72□□□□□ -1.49
VPS41-208ENST00000448833 EMG1Q92979 244 aaKnown RBP5.72□□□□□ -1.49
VPS41-208ENST00000448833 STMN2Q93045 179 aa5.72□□□□□ -1.49
VPS41-208ENST00000448833 TBX5Q99593 518 aa5.72□□□□□ -1.49
VPS41-208ENST00000448833 CIB1Q99828 191 aa5.72□□□□□ -1.49
VPS41-208ENST00000448833 GABARAPL3Q9BY60 117 aa5.72□□□□□ -1.49
VPS41-208ENST00000448833 TMEM133Q9H2Q1 129 aa5.72□□□□□ -1.49
VPS41-208ENST00000448833 TAS2R3Q9NYW6 316 aa5.72□□□□□ -1.49
VPS41-208ENST00000448833 GNG8Q9UK08 70 aa5.72□□□□□ -1.49
VPS41-208ENST00000448833 HHLA2Q9UM44 414 aa5.72□□□□□ -1.49
VPS41-208ENST00000448833 LOC107986453A0A1B0GWG9 222 aa5.71□□□□□ -1.5
VPS41-208ENST00000448833 LEUTXA8MZ59 168 aa5.71□□□□□ -1.5
VPS41-208ENST00000448833 OOSP1A8MZH6 123 aa5.71□□□□□ -1.5
VPS41-208ENST00000448833 M0QZK8 103 aa5.71□□□□□ -1.5
VPS41-208ENST00000448833 TOR1AO14656 332 aa5.71□□□□□ -1.5
VPS41-208ENST00000448833 MAGEB4O15481 346 aaPredicted RBP5.71□□□□□ -1.5
VPS41-208ENST00000448833 MPZL2O60487 215 aa5.71□□□□□ -1.5
VPS41-208ENST00000448833 MITFO75030 526 aaPredicted RBP5.71□□□□□ -1.5
VPS41-208ENST00000448833 ALX3O95076 343 aa5.71□□□□□ -1.5
VPS41-208ENST00000448833 MT-ND2P03891 347 aa5.71□□□□□ -1.5
VPS41-208ENST00000448833 DBTP11182 482 aaKnown RBP5.71□□□□□ -1.5
VPS41-208ENST00000448833 ATF1P18846 271 aa5.71□□□□□ -1.5
VPS41-208ENST00000448833 LMO1P25800 156 aa5.71□□□□□ -1.5
VPS41-208ENST00000448833 EPHA2P29317 976 aa5.71□□□□□ -1.5
VPS41-208ENST00000448833 MNDAP41218 407 aa5.71□□□□□ -1.5
VPS41-208ENST00000448833 SLC34A1Q06495 639 aa5.71□□□□□ -1.5
VPS41-208ENST00000448833 PDZK1IP1Q13113 114 aa5.71□□□□□ -1.5
VPS41-208ENST00000448833 EDDM3AQ14507 147 aa5.71□□□□□ -1.5
VPS41-208ENST00000448833 KPRPQ5T749 579 aaPredicted RBP5.71□□□□□ -1.5
VPS41-208ENST00000448833 HEPN1Q6WQI6 88 aa5.71□□□□□ -1.5
VPS41-208ENST00000448833 BCDIN3DQ7Z5W3 292 aaKnown RBP5.71□□□□□ -1.5
VPS41-208ENST00000448833 CENPVQ7Z7K6 275 aaPredicted RBP5.71□□□□□ -1.5
VPS41-208ENST00000448833 ACBD7Q8N6N7 88 aa5.71□□□□□ -1.5
VPS41-208ENST00000448833 ZNF565Q8N9K5 539 aa5.71□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms