RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 OR5C1Q8NGR4 320 aa9.14□□□□□ -0.95
LIMCH1-203ENST00000396595 VN1R17PQ8TDU5 208 aa9.14□□□□□ -0.95
LIMCH1-203ENST00000396595 RAB37Q96AX2 223 aa9.14□□□□□ -0.95
LIMCH1-203ENST00000396595 TSPAN32Q96QS1 320 aa9.14□□□□□ -0.95
LIMCH1-203ENST00000396595 MAP1LC3BQ9GZQ8 125 aa9.14□□□□□ -0.95
LIMCH1-203ENST00000396595 FBXL17Q9UF56 701 aa9.14□□□□□ -0.95
LIMCH1-203ENST00000396595 ARID1AO14497 2285 aa9.14□□□□□ -0.95
LIMCH1-203ENST00000396595 OR2W5A6NFC9 320 aa9.13□□□□□ -0.95
LIMCH1-203ENST00000396595 KRASP01116 189 aa9.13□□□□□ -0.95
LIMCH1-203ENST00000396595 INHBBP09529 407 aa9.13□□□□□ -0.95
LIMCH1-203ENST00000396595 SRFP11831 508 aa9.13□□□□□ -0.95
LIMCH1-203ENST00000396595 FMODQ06828 376 aa9.13□□□□□ -0.95
LIMCH1-203ENST00000396595 SLC38A11Q08AI6 406 aa9.13□□□□□ -0.95
LIMCH1-203ENST00000396595 HES3Q5TGS1 186 aa9.13□□□□□ -0.95
LIMCH1-203ENST00000396595 TGIF2LXQ8IUE1 241 aa9.13□□□□□ -0.95
LIMCH1-203ENST00000396595 ZG16BQ96DA0 208 aa9.13□□□□□ -0.95
LIMCH1-203ENST00000396595 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.13□□□□□ -0.95
LIMCH1-203ENST00000396595 LSM2Q9Y333 95 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-203ENST00000396595 DMRT1Q9Y5R6 373 aa9.13□□□□□ -0.95
LIMCH1-203ENST00000396595 V9GYH0 126 aa9.13□□□□□ -0.95
LIMCH1-203ENST00000396595 TRGV10A0A0A0MS01 117 aa9.13□□□□□ -0.95
LIMCH1-203ENST00000396595 ALG1L2C9J202 215 aa9.13□□□□□ -0.95
LIMCH1-203ENST00000396595 ADAM20O43506 726 aa9.13□□□□□ -0.95
LIMCH1-203ENST00000396595 CDKN2AP42771 156 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-203ENST00000396595 ZNF141Q15928 474 aa9.13□□□□□ -0.95
LIMCH1-203ENST00000396595 AWAT1Q58HT5 328 aa9.13□□□□□ -0.95
LIMCH1-203ENST00000396595 AMER3Q8N944 861 aa9.13□□□□□ -0.95
LIMCH1-203ENST00000396595 FGF14Q92915 247 aa9.13□□□□□ -0.95
LIMCH1-203ENST00000396595 ZNF707Q96C28 371 aaPredicted RBP9.13□□□□□ -0.95
LIMCH1-203ENST00000396595 ISLRO14498 428 aa9.13□□□□□ -0.95
LIMCH1-203ENST00000396595 OGG1O15527 345 aa9.13□□□□□ -0.95
LIMCH1-203ENST00000396595 PDCD6O75340 191 aa9.13□□□□□ -0.95
LIMCH1-203ENST00000396595 DAOP14920 347 aa9.13□□□□□ -0.95
LIMCH1-203ENST00000396595 IGFBP7Q16270 282 aa9.13□□□□□ -0.95
LIMCH1-203ENST00000396595 FAM78BQ5VT40 261 aa9.13□□□□□ -0.95
LIMCH1-203ENST00000396595 TP53I13Q8NBR0 393 aaPredicted RBP9.13□□□□□ -0.95
LIMCH1-203ENST00000396595 ATP5SQ99766 215 aa9.13□□□□□ -0.95
LIMCH1-203ENST00000396595 TIMM9Q9Y5J7 89 aa9.13□□□□□ -0.95
LIMCH1-203ENST00000396595 MYO7AQ13402 2215 aa9.13□□□□□ -0.95
LIMCH1-203ENST00000396595 TRBV23-1A0A0A0MS06 115 aa9.13□□□□□ -0.95
LIMCH1-203ENST00000396595 GEMIN2O14893 280 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-203ENST00000396595 CD300CQ08708 224 aa9.13□□□□□ -0.95
LIMCH1-203ENST00000396595 REC114Q7Z4M0 266 aa9.13□□□□□ -0.95
LIMCH1-203ENST00000396595 MYPOPQ86VE0 399 aaPredicted RBP9.13□□□□□ -0.95
LIMCH1-203ENST00000396595 LRRC61Q9BV99 259 aa9.13□□□□□ -0.95
LIMCH1-203ENST00000396595 LOXL2Q9Y4K0 774 aa9.13□□□□□ -0.95
LIMCH1-203ENST00000396595 CRXO43186 299 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 CDC14BO60729 498 aa9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 HERVK_113P61574 105 aa9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 SRSF9Q13242 221 aaKnown RBP eCLIP9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 SURF2Q15527 256 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 PWWP2BQ6NUJ5 590 aa9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 LINC01555Q8NAE3 123 aa9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 OR13G1Q8NGZ3 307 aa9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 TMEM230Q96A57 120 aa9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 ZPBPQ9BS86 351 aa9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 FER1L6Q2WGJ9 1857 aa9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 C3orf85A0A1B0GTC6 90 aa9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 OR4C45A6NMZ5 311 aa9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 M0R1B8 84 aa9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 RRP8O43159 456 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 CTSVO60911 334 aa9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 NEURL1O76050 574 aa9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 HRASP01112 189 aa9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 SEMG1P04279 462 aa9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 GABRA1P14867 456 aa9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 PAX5Q02548 391 aa9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 RGS7BPQ6MZT1 257 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 MRGPREQ86SM8 312 aa9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 OR2A5Q96R48 311 aa9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 METTL12A8MUP2 240 aa9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 CDC42EP2O14613 210 aa9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 ARF6P62330 175 aa9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 HLA-DRB3P79483 266 aa9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 KLRB1Q12918 225 aa9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 C8orf82Q6P1X6 216 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 ALG14Q96F25 216 aa9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 RER1O15258 196 aa9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 PNRC1Q12796 327 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 C17orf78Q8N4C9 275 aa9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 ACY3Q96HD9 319 aa9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 DDA1Q9BW61 102 aa9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 WDR61Q9GZS3 305 aaKnown RBP9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 TAAR3PQ9P1P4 343 aa9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 TOGARAM1Q9Y4F4 1720 aa9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 TRBV5-3A0A0A0MS03 114 aa9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 HTR1DP28221 377 aa9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 VMA21Q3ZAQ7 101 aa9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 SLC25A30Q5SVS4 291 aa9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 DMRTA1Q5VZB9 504 aa9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 ETFBKMTQ8IXQ9 262 aa9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 NUP37Q8NFH4 326 aa9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 LPAR3Q9UBY5 353 aa9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 NAGKQ9UJ70 344 aa9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 ERRFI1Q9UJM3 462 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 SLC45A2Q9UMX9 530 aa9.12□□□□□ -0.95
LIMCH1-203ENST00000396595 NUP214P35658 2090 aaPredicted RBP9.11□□□□□ -0.95
LIMCH1-203ENST00000396595 DIRC3C9JPN6 131 aa9.11□□□□□ -0.95
LIMCH1-203ENST00000396595 NGFP01138 241 aa9.11□□□□□ -0.95
LIMCH1-203ENST00000396595 IGHA1P01876 353 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms