RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 PKDCCQ504Y2 493 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 MARCH8Q5T0T0 291 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 CFAP161Q6P656 301 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 HSD11B1LQ7Z5J1 315 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 TMEM116Q8NCL8 245 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 PLPPR1Q8TBJ4 325 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 LIPHQ8WWY8 451 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 DERL1Q9BUN8 251 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 AUP1Q9Y679 476 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 C9orf170A2RU37 121 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 TRGC1P0CF51 173 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 ACP1P24666 158 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 OTX2P32243 289 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 SLC10A6Q3KNW5 377 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 OR51E1Q8TCB6 317 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 IL25Q9H293 177 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 GHITMQ9H3K2 345 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 SPHK2Q9NRA0 654 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 SPCS1Q9Y6A9 102 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 R4GMQ9 66 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 C11orf97A0A1B0GVM6 126 aaPredicted RBP4.35□□□□□ -1.71
CSMD3-201ENST00000297405 PYCARD-AS1I3L0S3 204 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 CDC14BO60729 498 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 EIF3GO75821 320 aaKnown RBP eCLIP4.35□□□□□ -1.71
CSMD3-201ENST00000297405 ATP5LO75964 103 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 CST5P28325 142 aaPredicted RBP4.35□□□□□ -1.71
CSMD3-201ENST00000297405 HOXC5Q00444 222 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 SYPL1Q16563 259 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 SPANXN5Q5MJ07 72 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 Q6ZSR9 355 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 RBM45Q8IUH3 476 aaKnown RBP4.35□□□□□ -1.71
CSMD3-201ENST00000297405 OR10G3Q8NGC4 313 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 CBLN4Q9NTU7 201 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 V9GYH0 126 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 NMUP48645 174 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 SP3Q02447 781 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 ABHD17CQ6PCB6 329 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 LCN15Q6UWW0 184 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 RABEPKQ7Z6M1 372 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 TMEM140Q9NV12 185 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 A0A087WV62 115 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 A8MXK9 166 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 ITGB1BP1O14713 200 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 NXPH2O95156 264 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 PLAUP00749 431 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 THY1P04216 161 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 HMGN2P05204 90 aaKnown RBP4.35□□□□□ -1.71
CSMD3-201ENST00000297405 SLC19A1P41440 591 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 LBX1P52954 281 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 ZXDAP98168 799 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 ZXDBP98169 803 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 NHLRC3Q5JS37 347 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 PIP5KL1Q5T9C9 394 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 XAF1Q6GPH4 301 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 PQLC2Q6ZP29 291 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 ELOVL5Q9NYP7 299 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 ZCWPW2A0A1B0GU75 182 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 CLDN5O00501 218 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 COCHO43405 550 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 NEURL1O76050 574 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 TRGC2P03986 189 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 HIST1H1AQ02539 215 aaPredicted RBP4.35□□□□□ -1.71
CSMD3-201ENST00000297405 ISXQ2M1V0 245 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 RAET1LQ5VY80 246 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 NUFIP2Q7Z417 695 aaKnown RBP4.35□□□□□ -1.71
CSMD3-201ENST00000297405 PCGF1Q9BSM1 259 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 PLA2G12AQ9BZM1 189 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 CES1P1Q9UKY3 287 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 COL1A1P02452 1464 aaPredicted RBP4.35□□□□□ -1.71
CSMD3-201ENST00000297405 LOC107984156A0A0G2JMH3 177 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 WNT11O96014 354 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 RABIFP47224 123 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 ARL17AQ8IVW1 177 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 MS4A3Q96HJ5 214 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 CDCP1Q9H5V8 836 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 SLC7A10Q9NS82 523 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 A1L4Q6 167 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 STARD6P59095 220 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 ZNF415Q09FC8 603 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 ST3GAL2Q16842 350 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 DGAT2L7PQ6IED9 249 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 NUP37Q8NFH4 326 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 KLRG1Q96E93 195 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 Q9Y3F1 56 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 SHC1P29353 583 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 OR2K2Q8NGT1 345 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 ZG16BQ96DA0 208 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 CITED1Q99966 193 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 C1QTNF6Q9BXI9 259 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 LANCL1O43813 399 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 GPX5O75715 221 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 MFSD12Q6NUT3 480 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 SPNS3Q6ZMD2 512 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 DIO2Q92813 273 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 ZNF48Q96MX3 618 aaPredicted RBP4.35□□□□□ -1.71
CSMD3-201ENST00000297405 TOX2Q96NM4 488 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 GOLGA2P5Q9HBQ8 144 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 GPR84Q9NQS5 396 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 ROBO1Q9Y6N7 1651 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 A0A1W2PQM1 296 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms