RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 TRAV34A0A0B4J273 112 aa6.86□□□□□ -1.31
LIMCH1-219ENST00000514096 A0A1B0GV50 99 aa6.86□□□□□ -1.31
LIMCH1-219ENST00000514096 A6NJ64 397 aa6.86□□□□□ -1.31
LIMCH1-219ENST00000514096 A8MXK9 166 aa6.86□□□□□ -1.31
LIMCH1-219ENST00000514096 UBE2CO00762 179 aa6.86□□□□□ -1.31
LIMCH1-219ENST00000514096 MT-ND5P03915 603 aa6.86□□□□□ -1.31
LIMCH1-219ENST00000514096 H2AFB2P0C5Z0 115 aa6.86□□□□□ -1.31
LIMCH1-219ENST00000514096 OR8U8P0C7N1 319 aa6.86□□□□□ -1.31
LIMCH1-219ENST00000514096 ACHEP22303 614 aa6.86□□□□□ -1.31
LIMCH1-219ENST00000514096 CSNK1A1P48729 337 aa6.86□□□□□ -1.31
LIMCH1-219ENST00000514096 SFRP4Q6FHJ7 346 aaPredicted RBP6.86□□□□□ -1.31
LIMCH1-219ENST00000514096 C19orf35Q6ZS72 473 aa6.86□□□□□ -1.31
LIMCH1-219ENST00000514096 H1FNTQ75WM6 255 aaPredicted RBP6.86□□□□□ -1.31
LIMCH1-219ENST00000514096 IQCF1Q8N6M8 205 aa6.86□□□□□ -1.31
LIMCH1-219ENST00000514096 WFDC11Q8NEX6 87 aa6.86□□□□□ -1.31
LIMCH1-219ENST00000514096 OR10W1Q8NGF6 305 aa6.86□□□□□ -1.31
LIMCH1-219ENST00000514096 OR6K6Q8NGW6 343 aa6.86□□□□□ -1.31
LIMCH1-219ENST00000514096 OR8U1Q8NH10 309 aa6.86□□□□□ -1.31
LIMCH1-219ENST00000514096 RNF128Q8TEB7 428 aa6.86□□□□□ -1.31
LIMCH1-219ENST00000514096 EPYCQ99645 322 aa6.86□□□□□ -1.31
LIMCH1-219ENST00000514096 MSL2Q9HCI7 577 aa6.86□□□□□ -1.31
LIMCH1-219ENST00000514096 MTCH1Q9NZJ7 389 aa6.86□□□□□ -1.31
LIMCH1-219ENST00000514096 A0A087WUJ7 227 aa6.86□□□□□ -1.31
LIMCH1-219ENST00000514096 A0A0U1RQV5 110 aa6.86□□□□□ -1.31
LIMCH1-219ENST00000514096 C9orf170A2RU37 121 aa6.86□□□□□ -1.31
LIMCH1-219ENST00000514096 FAM183AA6NL82 134 aa6.86□□□□□ -1.31
LIMCH1-219ENST00000514096 THY1P04216 161 aa6.86□□□□□ -1.31
LIMCH1-219ENST00000514096 HTR1AP08908 422 aa6.86□□□□□ -1.31
LIMCH1-219ENST00000514096 ACVR1BP36896 505 aa6.86□□□□□ -1.31
LIMCH1-219ENST00000514096 CRYBA2P53672 197 aa6.86□□□□□ -1.31
LIMCH1-219ENST00000514096 HERV-K104P63124 156 aa6.86□□□□□ -1.31
LIMCH1-219ENST00000514096 TGFBR3Q03167 851 aa6.86□□□□□ -1.31
LIMCH1-219ENST00000514096 RPL18Q07020 188 aaKnown RBP6.86□□□□□ -1.31
LIMCH1-219ENST00000514096 PNLIPRP3Q17RR3 467 aa6.86□□□□□ -1.31
LIMCH1-219ENST00000514096 LYPD4Q6UWN0 246 aa6.86□□□□□ -1.31
LIMCH1-219ENST00000514096 LRRC28Q86X40 367 aaPredicted RBP6.86□□□□□ -1.31
LIMCH1-219ENST00000514096 LINC00346Q8IVM7 164 aa6.86□□□□□ -1.31
LIMCH1-219ENST00000514096 WDFY1Q8IWB7 410 aa6.86□□□□□ -1.31
LIMCH1-219ENST00000514096 AQP12AQ8IXF9 295 aa6.86□□□□□ -1.31
LIMCH1-219ENST00000514096 CACNG8Q8WXS5 425 aa6.86□□□□□ -1.31
LIMCH1-219ENST00000514096 REG4Q9BYZ8 158 aa6.86□□□□□ -1.31
LIMCH1-219ENST00000514096 ARV1Q9H2C2 271 aa6.86□□□□□ -1.31
LIMCH1-219ENST00000514096 METTL1Q9UBP6 276 aaKnown RBP6.86□□□□□ -1.31
LIMCH1-219ENST00000514096 E5RGE8 158 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 XKRYO14609 159 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 MPZL1O95297 269 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 PPP1R3DO95685 299 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 RLN1P04808 185 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 CD3EP07766 207 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 CDKN1BP46527 198 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 HTR5AP47898 357 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 SELENOWP63302 87 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 ACSM1Q08AH1 577 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 ST3GAL3Q11203 375 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 RAB31Q13636 194 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 TM4SF20Q53R12 229 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 ALG10Q5BKT4 473 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 PHYHD1Q5SRE7 291 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 FBXW9Q5XUX1 488 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 PODNL1Q6PEZ8 512 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 PAQR6Q6TCH4 344 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 HSD17B13Q7Z5P4 300 aaPredicted RBP6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 OR4K5Q8NGD3 323 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 OR8J3Q8NGG0 315 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 PIGXQ8TBF5 258 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 CCL19Q99731 98 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 SLC6A7Q99884 636 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 CACNG6Q9BXT2 260 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 TLNRD1Q9H1K6 362 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 CENPMQ9NSP4 180 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 TAS2R16Q9NYV7 291 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 TRAV36DV7A0A075B6V5 113 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 A0A1B0GV72 72 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 BBIP1A8MTZ0 92 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 SELENOFO60613 162 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 H1F0P07305 194 aaKnown RBP6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 FGF2P09038 288 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 MAKP20794 623 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 ATP4BP51164 291 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 RNPS1Q15287 305 aaKnown RBP6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 ACKR1Q16570 336 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 LINC00299Q6ZSB3 139 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 MRPL41Q8IXM3 137 aaKnown RBP6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 SDR9C7Q8NEX9 313 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 OR11H7Q8NGC8 314 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 SLC7A13Q8TCU3 470 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 SLC25A43Q8WUT9 341 aaPredicted RBP6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 BCL2L2Q92843 193 aaPredicted RBP6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 R3HDM4Q96D70 268 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 PBDC1Q9BVG4 233 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 SYT4Q9H2B2 425 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 RGCCQ9H4X1 137 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 EGLN3Q9H6Z9 239 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 FN3KRPQ9HA64 309 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 HDGFL3Q9Y3E1 203 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 IER3IP1Q9Y5U9 82 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 IGKV1D-42A0A075B6H8 117 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 TRBV5-3A0A0A0MS03 114 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 TMEM218A2RU14 115 aa6.85□□□□□ -1.31
LIMCH1-219ENST00000514096 KCNAB3O43448 404 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms