RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 CD1AP06126 327 aa7.56□□□□□ -1.2
USP40-203ENST00000427112 ZNF25P17030 456 aaPredicted RBP7.56□□□□□ -1.2
USP40-203ENST00000427112 GALNSP34059 522 aa7.56□□□□□ -1.2
USP40-203ENST00000427112 CACNA1BQ00975 2339 aa7.56□□□□□ -1.2
USP40-203ENST00000427112 OR2B11Q5JQS5 317 aa7.56□□□□□ -1.2
USP40-203ENST00000427112 SGPP2Q8IWX5 399 aa7.56□□□□□ -1.2
USP40-203ENST00000427112 OR51H1Q8NH63 302 aa7.56□□□□□ -1.2
USP40-203ENST00000427112 SGCZQ96LD1 299 aa7.56□□□□□ -1.2
USP40-203ENST00000427112 ULBP2Q9BZM5 246 aa7.56□□□□□ -1.2
USP40-203ENST00000427112 ALKBH4Q9NXW9 302 aa7.56□□□□□ -1.2
USP40-203ENST00000427112 AK3Q9UIJ7 227 aa7.56□□□□□ -1.2
USP40-203ENST00000427112 PTRH2Q9Y3E5 179 aaKnown RBP7.56□□□□□ -1.2
USP40-203ENST00000427112 SSSCA1O60232 199 aa7.56□□□□□ -1.2
USP40-203ENST00000427112 SRSF10O75494 262 aaKnown RBP7.56□□□□□ -1.2
USP40-203ENST00000427112 ACAA1P09110 424 aaPredicted RBP7.56□□□□□ -1.2
USP40-203ENST00000427112 FAM157CP0CG43 387 aa7.56□□□□□ -1.2
USP40-203ENST00000427112 OTX2P32243 289 aa7.56□□□□□ -1.2
USP40-203ENST00000427112 FASLGP48023 281 aa7.56□□□□□ -1.2
USP40-203ENST00000427112 NPBWR2P48146 333 aa7.56□□□□□ -1.2
USP40-203ENST00000427112 MLF1P58340 268 aa7.56□□□□□ -1.2
USP40-203ENST00000427112 CCL7P80098 99 aa7.56□□□□□ -1.2
USP40-203ENST00000427112 C3AR1Q16581 482 aa7.56□□□□□ -1.2
USP40-203ENST00000427112 C1orf100Q5SVJ3 147 aa7.56□□□□□ -1.2
USP40-203ENST00000427112 OR10D4PQ8NGN7 298 aa7.56□□□□□ -1.2
USP40-203ENST00000427112 RBM14Q96PK6 669 aaKnown RBP7.56□□□□□ -1.2
USP40-203ENST00000427112 WFDC1Q9HC57 220 aa7.56□□□□□ -1.2
USP40-203ENST00000427112 PMS2P1A4D2B8 440 aa7.56□□□□□ -1.2
USP40-203ENST00000427112 A6NIZ1 184 aa7.56□□□□□ -1.2
USP40-203ENST00000427112 LMO7DNF2Z398 122 aa7.56□□□□□ -1.2
USP40-203ENST00000427112 M0R135 149 aa7.56□□□□□ -1.2
USP40-203ENST00000427112 BPNT1O95861 308 aa7.56□□□□□ -1.2
USP40-203ENST00000427112 IFNA2P01563 188 aa7.56□□□□□ -1.2
USP40-203ENST00000427112 IFNA21P01568 189 aa7.56□□□□□ -1.2
USP40-203ENST00000427112 HKR1P10072 659 aa7.56□□□□□ -1.2
USP40-203ENST00000427112 EIF2S3P41091 472 aaKnown RBP7.56□□□□□ -1.2
USP40-203ENST00000427112 MMP16P51512 607 aa7.56□□□□□ -1.2
USP40-203ENST00000427112 FGF8P55075 233 aaPredicted RBP7.56□□□□□ -1.2
USP40-203ENST00000427112 RAP1BP61224 184 aa7.56□□□□□ -1.2
USP40-203ENST00000427112 RAP1AP62834 184 aa7.56□□□□□ -1.2
USP40-203ENST00000427112 NKX6-1P78426 367 aaPredicted RBP7.56□□□□□ -1.2
USP40-203ENST00000427112 SPATA46Q5T0L3 261 aa7.56□□□□□ -1.2
USP40-203ENST00000427112 NKAIN3Q8N8D7 197 aa7.56□□□□□ -1.2
USP40-203ENST00000427112 NOXO1Q8NFA2 376 aa7.56□□□□□ -1.2
USP40-203ENST00000427112 FGFBP3Q8TAT2 258 aa7.56□□□□□ -1.2
USP40-203ENST00000427112 RTN4IP1Q8WWV3 396 aaPredicted RBP7.56□□□□□ -1.2
USP40-203ENST00000427112 ZNF799Q96GE5 643 aa7.56□□□□□ -1.2
USP40-203ENST00000427112 ATG101Q9BSB4 218 aa7.56□□□□□ -1.2
USP40-203ENST00000427112 SLC26A1Q9H2B4 701 aa7.56□□□□□ -1.2
USP40-203ENST00000427112 SLC7A11Q9UPY5 501 aa7.56□□□□□ -1.2
USP40-203ENST00000427112 TMEM14DPA8MWL7 114 aa7.55□□□□□ -1.2
USP40-203ENST00000427112 UMAD1C9J7I0 102 aa7.55□□□□□ -1.2
USP40-203ENST00000427112 TRAF3IP2O43734 574 aaPredicted RBP7.55□□□□□ -1.2
USP40-203ENST00000427112 GNRHRP30968 328 aa7.55□□□□□ -1.2
USP40-203ENST00000427112 GPR137CQ8N3F9 429 aa7.55□□□□□ -1.2
USP40-203ENST00000427112 ZNF501Q96CX3 271 aaPredicted RBP7.55□□□□□ -1.2
USP40-203ENST00000427112 C2orf50Q96LR7 162 aa7.55□□□□□ -1.2
USP40-203ENST00000427112 RASL10BQ96S79 203 aa7.55□□□□□ -1.2
USP40-203ENST00000427112 EDEM2Q9BV94 578 aa7.55□□□□□ -1.2
USP40-203ENST00000427112 ALX4Q9H161 411 aaPredicted RBP7.55□□□□□ -1.2
USP40-203ENST00000427112 DCAF16Q9NXF7 216 aa7.55□□□□□ -1.2
USP40-203ENST00000427112 IL17BQ9UHF5 180 aa7.55□□□□□ -1.2
USP40-203ENST00000427112 C7orf77A4D0Y5 90 aa7.55□□□□□ -1.2
USP40-203ENST00000427112 HS3ST1O14792 307 aa7.55□□□□□ -1.2
USP40-203ENST00000427112 CD27P26842 260 aa7.55□□□□□ -1.2
USP40-203ENST00000427112 HTR5AP47898 357 aa7.55□□□□□ -1.2
USP40-203ENST00000427112 SSTP61278 116 aa7.55□□□□□ -1.2
USP40-203ENST00000427112 QRFPP83859 136 aa7.55□□□□□ -1.2
USP40-203ENST00000427112 HGFACQ04756 655 aa7.55□□□□□ -1.2
USP40-203ENST00000427112 ACTBL2Q562R1 376 aa7.55□□□□□ -1.2
USP40-203ENST00000427112 NECAP1Q8NC96 275 aa7.55□□□□□ -1.2
USP40-203ENST00000427112 HLA-CQ95604 372 aa7.55□□□□□ -1.2
USP40-203ENST00000427112 MED9Q9NWA0 146 aa7.55□□□□□ -1.2
USP40-203ENST00000427112 RCC2Q9P258 522 aaKnown RBP7.55□□□□□ -1.2
USP40-203ENST00000427112 MYOTQ9UBF9 498 aa7.55□□□□□ -1.2
USP40-203ENST00000427112 DKKL1Q9UK85 242 aa7.55□□□□□ -1.2
USP40-203ENST00000427112 NUP210LQ5VU65 1888 aa7.55□□□□□ -1.2
USP40-203ENST00000427112 HSFX4A0A1B0GTS1 333 aaPredicted RBP7.55□□□□□ -1.2
USP40-203ENST00000427112 HSFX3A0A1B0GWH4 333 aaPredicted RBP7.55□□□□□ -1.2
USP40-203ENST00000427112 TUBAL3A6NHL2 446 aa7.55□□□□□ -1.2
USP40-203ENST00000427112 MBPP02686 304 aaPredicted RBP7.55□□□□□ -1.2
USP40-203ENST00000427112 TFF1P04155 84 aa7.55□□□□□ -1.2
USP40-203ENST00000427112 HOXC4P09017 264 aaPredicted RBP7.55□□□□□ -1.2
USP40-203ENST00000427112 PGA4P0DJD7 388 aa7.55□□□□□ -1.2
USP40-203ENST00000427112 PGA3P0DJD8 388 aa7.55□□□□□ -1.2
USP40-203ENST00000427112 DEFA4P12838 97 aa7.55□□□□□ -1.2
USP40-203ENST00000427112 TMEM268Q5VZI3 342 aa7.55□□□□□ -1.2
USP40-203ENST00000427112 PRSS54Q6PEW0 395 aa7.55□□□□□ -1.2
USP40-203ENST00000427112 DNM1P46Q6ZS02 220 aa7.55□□□□□ -1.2
USP40-203ENST00000427112 SLC43A2Q8N370 569 aa7.55□□□□□ -1.2
USP40-203ENST00000427112 GLYATL2Q8WU03 294 aa7.55□□□□□ -1.2
USP40-203ENST00000427112 RDH5Q92781 318 aa7.55□□□□□ -1.2
USP40-203ENST00000427112 C1orf147Q96MC9 270 aaPredicted RBP7.55□□□□□ -1.2
USP40-203ENST00000427112 TCEAL7Q9BRU2 100 aa7.55□□□□□ -1.2
USP40-203ENST00000427112 NELFAQ9H3P2 528 aa7.55□□□□□ -1.2
USP40-203ENST00000427112 AURKAIP1Q9NWT8 199 aaPredicted RBP7.55□□□□□ -1.2
USP40-203ENST00000427112 MMACHCQ9Y4U1 282 aa7.55□□□□□ -1.2
USP40-203ENST00000427112 RBM7Q9Y580 266 aaKnown RBP7.55□□□□□ -1.2
USP40-203ENST00000427112 CCDC187A0A096LP49 1063 aa7.54□□□□□ -1.2
USP40-203ENST00000427112 TERTO14746 1132 aaKnown RBP7.54□□□□□ -1.2
USP40-203ENST00000427112 BCAT2O15382 392 aaPredicted RBP7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms