RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 SSTR5P35346 364 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 NBL1P41271 181 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 ACTR1BP42025 376 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 PRLHRP49683 370 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 GDI2P50395 445 aaKnown RBP1.5□□□□□ -2.17
CD44-239ENST00000639002 P2RX1P51575 399 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 TAS2R39P59534 338 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 RHOAP61586 193 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 RPL31P62899 125 aaKnown RBP1.5□□□□□ -2.17
CD44-239ENST00000639002 C2orf54Q08AI8 447 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 CASP8Q14790 479 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 MAD2L1BPQ15013 274 aaPredicted RBP1.5□□□□□ -2.17
CD44-239ENST00000639002 OR7A5Q15622 319 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 ZNHIT3Q15649 155 aaPredicted RBP1.5□□□□□ -2.17
CD44-239ENST00000639002 EXOC3L4Q17RC7 722 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 KRTAP13-4Q3LI77 160 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 DNAL1Q4LDG9 190 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 SMUG1Q53HV7 270 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 PDZD11Q5EBL8 140 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 TCEAL5Q5H9L2 206 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 COQ5Q5HYK3 327 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 LPCAT4Q643R3 524 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 FAM45BPQ6NSW5 357 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 APOBEC3HQ6NTF7 200 aaKnown RBP1.5□□□□□ -2.17
CD44-239ENST00000639002 DNAJC24Q6P3W2 148 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 TTC33Q6PID6 262 aaPredicted RBP1.5□□□□□ -2.17
CD44-239ENST00000639002 PLET1Q6UQ28 207 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 CD300LGQ6UXG3 332 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 WDR82Q6UXN9 313 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 LINC00336Q6ZUF6 198 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 MRPL52Q86TS9 123 aaKnown RBP1.5□□□□□ -2.17
CD44-239ENST00000639002 BOD1L2Q8IYS8 172 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 WDR31Q8NA23 367 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 OR8G5Q8NG78 346 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 OR6Q1Q8NGQ2 317 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 OR10Z1Q8NGY1 313 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 OR10J6PQ8NGY7 276 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 OR51E1Q8TCB6 317 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 FAM45AQ8TCE6 357 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 LRRC29Q8WV35 223 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 RNF133Q8WVZ7 376 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 APH1BQ8WW43 257 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 DNAJB3Q8WWF6 145 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 TCEAL3Q969E4 200 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 TMEM230Q96A57 120 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 SCGB3A2Q96PL1 93 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 CAMK2N2Q96S95 79 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 VAT1Q99536 393 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 TIMM17AQ99595 171 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 HSD17B10Q99714 261 aaKnown RBP1.5□□□□□ -2.17
CD44-239ENST00000639002 ZNF426Q9BUY5 554 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 DERL2Q9GZP9 239 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 OR51V1Q9H2C8 321 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 DHX35Q9H5Z1 703 aaKnown RBP1.5□□□□□ -2.17
CD44-239ENST00000639002 ZNF442Q9H7R0 627 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 TRIM45Q9H8W5 580 aaPredicted RBP1.5□□□□□ -2.17
CD44-239ENST00000639002 WDR54Q9H977 334 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 PLEKHA1Q9HB21 404 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 EXOSC4Q9NPD3 245 aaKnown RBP1.5□□□□□ -2.17
CD44-239ENST00000639002 ASCL3Q9NQ33 180 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 TMEM9BQ9NQ34 198 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 TREX1Q9NSU2 369 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 IMP3Q9NV31 184 aaKnown RBP1.5□□□□□ -2.17
CD44-239ENST00000639002 RHBDL2Q9NX52 303 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 SLC39A1Q9NY26 324 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 PSG8Q9UQ74 426 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 SIGLEC9Q9Y336 463 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 HECTD1Q9ULT8 2610 aa1.5□□□□□ -2.17
CD44-239ENST00000639002 FASNP49327 2511 aaKnown RBP1.49□□□□□ -2.17
CD44-239ENST00000639002 JMJD1CQ15652 2540 aa1.49□□□□□ -2.17
CD44-239ENST00000639002 ABCB11O95342 1321 aa1.49□□□□□ -2.17
CD44-239ENST00000639002 TTC21AQ8NDW8 1320 aa1.49□□□□□ -2.17
CD44-239ENST00000639002 A0A0A6YYD5 115 aa1.49□□□□□ -2.17
CD44-239ENST00000639002 ISPDA4D126 451 aa1.49□□□□□ -2.17
CD44-239ENST00000639002 A6NDN8 102 aa1.49□□□□□ -2.17
CD44-239ENST00000639002 SYCE1LA8MT33 242 aa1.49□□□□□ -2.17
CD44-239ENST00000639002 LRRN3E7EW58 273 aa1.49□□□□□ -2.17
CD44-239ENST00000639002 SMKR1H3BMG3 65 aa1.49□□□□□ -2.17
CD44-239ENST00000639002 ZNF593O00488 134 aaPredicted RBP1.49□□□□□ -2.17
CD44-239ENST00000639002 UBDO15205 165 aa1.49□□□□□ -2.17
CD44-239ENST00000639002 TCAPO15273 167 aa1.49□□□□□ -2.17
CD44-239ENST00000639002 NUPL2O15504 423 aaKnown RBP1.49□□□□□ -2.17
CD44-239ENST00000639002 FABP7O15540 132 aa1.49□□□□□ -2.17
CD44-239ENST00000639002 TRAPPC3O43617 180 aa1.49□□□□□ -2.17
CD44-239ENST00000639002 ATP6V1G2O95670 118 aa1.49□□□□□ -2.17
CD44-239ENST00000639002 RAB36O95755 333 aa1.49□□□□□ -2.17
CD44-239ENST00000639002 PTHP01270 115 aa1.49□□□□□ -2.17
CD44-239ENST00000639002 SERPINA6P08185 405 aa1.49□□□□□ -2.17
CD44-239ENST00000639002 TACSTD2P09758 323 aa1.49□□□□□ -2.17
CD44-239ENST00000639002 ZNF688P0C7X2 276 aa1.49□□□□□ -2.17
CD44-239ENST00000639002 ERGP11308 486 aa1.49□□□□□ -2.17
CD44-239ENST00000639002 MLNP12872 115 aa1.49□□□□□ -2.17
CD44-239ENST00000639002 IL1RNP18510 177 aa1.49□□□□□ -2.17
CD44-239ENST00000639002 GGT1P19440 569 aa1.49□□□□□ -2.17
CD44-239ENST00000639002 RAB4AP20338 218 aa1.49□□□□□ -2.17
CD44-239ENST00000639002 F8A1P23610 371 aa1.49□□□□□ -2.17
CD44-239ENST00000639002 MYL9P24844 172 aa1.49□□□□□ -2.17
CD44-239ENST00000639002 HLA-DMAP28067 261 aa1.49□□□□□ -2.17
CD44-239ENST00000639002 SLCO1A2P46721 670 aa1.49□□□□□ -2.17
CD44-239ENST00000639002 AP2S1P53680 142 aaPredicted RBP1.49□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 83.4 ms