RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 FAM90A13PP0C7W8 464 aa12.89□□□□□ -0.35
NUP54-217ENST00000514987 FAM90A14PP0C7W9 464 aa12.89□□□□□ -0.35
NUP54-217ENST00000514987 FAM90A24PP0C7X0 464 aa12.89□□□□□ -0.35
NUP54-217ENST00000514987 PATE4P0C8F1 98 aa12.89□□□□□ -0.35
NUP54-217ENST00000514987 TPT1P13693 172 aaKnown RBP12.89□□□□□ -0.35
NUP54-217ENST00000514987 RPS2P15880 293 aaKnown RBP12.89□□□□□ -0.35
NUP54-217ENST00000514987 GLRA1P23415 457 aa12.89□□□□□ -0.35
NUP54-217ENST00000514987 CLDN18P56856 261 aa12.89□□□□□ -0.35
NUP54-217ENST00000514987 SNTB1Q13884 538 aaKnown RBP12.89□□□□□ -0.35
NUP54-217ENST00000514987 RNPS1Q15287 305 aaKnown RBP12.89□□□□□ -0.35
NUP54-217ENST00000514987 TAF9Q16594 264 aa12.89□□□□□ -0.35
NUP54-217ENST00000514987 ANKRD55Q3KP44 614 aa12.89□□□□□ -0.35
NUP54-217ENST00000514987 PLCXD3Q63HM9 321 aa12.89□□□□□ -0.35
NUP54-217ENST00000514987 DHRS11Q6UWP2 260 aa12.89□□□□□ -0.35
NUP54-217ENST00000514987 ADAMTS17Q8TE56 1095 aa12.89□□□□□ -0.35
NUP54-217ENST00000514987 SIGLEC12Q96PQ1 595 aa12.89□□□□□ -0.35
NUP54-217ENST00000514987 ZNF2Q9BSG1 426 aaPredicted RBP12.89□□□□□ -0.35
NUP54-217ENST00000514987 RNF126Q9BV68 326 aa12.89□□□□□ -0.35
NUP54-217ENST00000514987 AK3Q9UIJ7 227 aa12.89□□□□□ -0.35
NUP54-217ENST00000514987 KLF13Q9Y2Y9 288 aaPredicted RBP12.89□□□□□ -0.35
NUP54-217ENST00000514987 SDK2Q58EX2 2172 aa12.88□□□□□ -0.35
NUP54-217ENST00000514987 SPRY1O43609 319 aaPredicted RBP12.88□□□□□ -0.35
NUP54-217ENST00000514987 ANGPTL7O43827 346 aa12.88□□□□□ -0.35
NUP54-217ENST00000514987 OR5H8P0DN80 308 aa12.88□□□□□ -0.35
NUP54-217ENST00000514987 ITGA3P26006 1051 aa12.88□□□□□ -0.35
NUP54-217ENST00000514987 ARR3P36575 388 aa12.88□□□□□ -0.35
NUP54-217ENST00000514987 EIF5AP63241 154 aaKnown RBP12.88□□□□□ -0.35
NUP54-217ENST00000514987 ARF1P84077 181 aaKnown RBP12.88□□□□□ -0.35
NUP54-217ENST00000514987 MALLQ13021 153 aa12.88□□□□□ -0.35
NUP54-217ENST00000514987 DPPA2Q7Z7J5 298 aa12.88□□□□□ -0.35
NUP54-217ENST00000514987 SAXO1Q8IYX7 474 aa12.88□□□□□ -0.35
NUP54-217ENST00000514987 FGFBP3Q8TAT2 258 aa12.88□□□□□ -0.35
NUP54-217ENST00000514987 PIK3IP1Q96FE7 263 aa12.88□□□□□ -0.35
NUP54-217ENST00000514987 FAAP24Q9BTP7 215 aa12.88□□□□□ -0.35
NUP54-217ENST00000514987 SHARPINQ9H0F6 387 aa12.88□□□□□ -0.35
NUP54-217ENST00000514987 WDR13Q9H1Z4 485 aa12.88□□□□□ -0.35
NUP54-217ENST00000514987 KLRC4-KLRK1H3BQV0 150 aa12.87□□□□□ -0.35
NUP54-217ENST00000514987 PDCD6O75340 191 aa12.87□□□□□ -0.35
NUP54-217ENST00000514987 ACTL6AO96019 429 aa12.87□□□□□ -0.35
NUP54-217ENST00000514987 IFNA21P01568 189 aa12.87□□□□□ -0.35
NUP54-217ENST00000514987 FCGR3AP08637 254 aa12.87□□□□□ -0.35
NUP54-217ENST00000514987 PI3P19957 117 aa12.87□□□□□ -0.35
NUP54-217ENST00000514987 PLGLB1Q02325 96 aa12.87□□□□□ -0.35
NUP54-217ENST00000514987 TMEM211Q6ICI0 200 aa12.87□□□□□ -0.35
NUP54-217ENST00000514987 POC1AQ8NBT0 407 aa12.87□□□□□ -0.35
NUP54-217ENST00000514987 GALNT11Q8NCW6 608 aa12.87□□□□□ -0.35
NUP54-217ENST00000514987 SLC30A7Q8NEW0 376 aa12.87□□□□□ -0.35
NUP54-217ENST00000514987 Q8NFD4 153 aa12.87□□□□□ -0.35
NUP54-217ENST00000514987 MAFIPQ8WZ33 124 aa12.87□□□□□ -0.35
NUP54-217ENST00000514987 PIGCQ92535 297 aa12.87□□□□□ -0.35
NUP54-217ENST00000514987 AQP10Q96PS8 301 aa12.87□□□□□ -0.35
NUP54-217ENST00000514987 TTTY12Q9BZ98 90 aa12.87□□□□□ -0.35
NUP54-217ENST00000514987 PRRG4Q9BZD6 226 aa12.87□□□□□ -0.35
NUP54-217ENST00000514987 OPA3Q9H6K4 179 aa12.87□□□□□ -0.35
NUP54-217ENST00000514987 SLC7A10Q9NS82 523 aa12.87□□□□□ -0.35
NUP54-217ENST00000514987 KCNIP3Q9Y2W7 256 aa12.87□□□□□ -0.35
NUP54-217ENST00000514987 CRYM-AS1A6NIL9 109 aa12.86□□□□□ -0.35
NUP54-217ENST00000514987 ZNF850A8MQ14 1090 aa12.86□□□□□ -0.35
NUP54-217ENST00000514987 NUDT19A8MXV4 375 aa12.86□□□□□ -0.35
NUP54-217ENST00000514987 TAAR5O14804 337 aa12.86□□□□□ -0.35
NUP54-217ENST00000514987 ADAP1O75689 374 aa12.86□□□□□ -0.35
NUP54-217ENST00000514987 F10P00742 488 aa12.86□□□□□ -0.35
NUP54-217ENST00000514987 EDN3P14138 238 aa12.86□□□□□ -0.35
NUP54-217ENST00000514987 IL15RAQ13261 267 aa12.86□□□□□ -0.35
NUP54-217ENST00000514987 BEX5Q5H9J7 111 aa12.86□□□□□ -0.35
NUP54-217ENST00000514987 UQCC3Q6UW78 93 aa12.86□□□□□ -0.35
NUP54-217ENST00000514987 FBXL14Q8N1E6 418 aa12.86□□□□□ -0.35
NUP54-217ENST00000514987 STPG2Q8N412 459 aa12.86□□□□□ -0.35
NUP54-217ENST00000514987 RELL2Q8NC24 303 aaPredicted RBP12.86□□□□□ -0.35
NUP54-217ENST00000514987 OR51F2Q8NH61 342 aa12.86□□□□□ -0.35
NUP54-217ENST00000514987 SLC39A7Q92504 469 aa12.86□□□□□ -0.35
NUP54-217ENST00000514987 APOBEC3DQ96AK3 386 aaPredicted RBP12.86□□□□□ -0.35
NUP54-217ENST00000514987 APH1AQ96BI3 265 aa12.86□□□□□ -0.35
NUP54-217ENST00000514987 CCDC120Q96HB5 630 aa12.86□□□□□ -0.35
NUP54-217ENST00000514987 LINC00052Q96N35 136 aa12.86□□□□□ -0.35
NUP54-217ENST00000514987 PIGMQ9H3S5 423 aa12.86□□□□□ -0.35
NUP54-217ENST00000514987 ZNF286AQ9HBT8 521 aa12.86□□□□□ -0.35
NUP54-217ENST00000514987 ST3GAL6Q9Y274 331 aa12.86□□□□□ -0.35
NUP54-217ENST00000514987 DOCK10Q96BY6 2186 aa12.86□□□□□ -0.35
NUP54-217ENST00000514987 KMT2EQ8IZD2 1858 aa12.86□□□□□ -0.35
NUP54-217ENST00000514987 IGKV1D-8A0A087WSZ0 117 aa12.86□□□□□ -0.35
NUP54-217ENST00000514987 PLATP00750 562 aa12.86□□□□□ -0.35
NUP54-217ENST00000514987 KNG1P01042 644 aa12.86□□□□□ -0.35
NUP54-217ENST00000514987 SP1P08047 785 aa12.86□□□□□ -0.35
NUP54-217ENST00000514987 ZNF728P0DKX0 622 aa12.86□□□□□ -0.35
NUP54-217ENST00000514987 FUT3P21217 361 aa12.86□□□□□ -0.35
NUP54-217ENST00000514987 PTGER4P35408 488 aa12.86□□□□□ -0.35
NUP54-217ENST00000514987 UCP3P55916 312 aa12.86□□□□□ -0.35
NUP54-217ENST00000514987 RBM11P57052 281 aaKnown RBP12.86□□□□□ -0.35
NUP54-217ENST00000514987 PPIAP62937 165 aaKnown RBP12.86□□□□□ -0.35
NUP54-217ENST00000514987 SRYQ05066 204 aa12.86□□□□□ -0.35
NUP54-217ENST00000514987 RSPO4Q2I0M5 234 aaPredicted RBP12.86□□□□□ -0.35
NUP54-217ENST00000514987 BAP18Q8IXM2 172 aa12.86□□□□□ -0.35
NUP54-217ENST00000514987 TMEM251Q8N6I4 163 aa12.86□□□□□ -0.35
NUP54-217ENST00000514987 CPEB3Q8NE35 698 aaKnown RBP12.86□□□□□ -0.35
NUP54-217ENST00000514987 OR10AD1Q8NGE0 317 aa12.86□□□□□ -0.35
NUP54-217ENST00000514987 ZNF75AQ96N20 296 aa12.86□□□□□ -0.35
NUP54-217ENST00000514987 SULT4A1Q9BR01 284 aa12.86□□□□□ -0.35
NUP54-217ENST00000514987 REPIN1Q9BWE0 567 aaKnown RBP12.86□□□□□ -0.35
NUP54-217ENST00000514987 SPEF1Q9Y4P9 236 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 104.9 ms