RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 GABRR1P24046 479 aa12.92□□□□□ -0.34
NUP54-217ENST00000514987 RPUSD3Q6P087 351 aaKnown RBP12.92□□□□□ -0.34
NUP54-217ENST00000514987 DTX1Q86Y01 620 aa12.92□□□□□ -0.34
NUP54-217ENST00000514987 ZSCAN4Q8NAM6 433 aaPredicted RBP12.92□□□□□ -0.34
NUP54-217ENST00000514987 OR1S1Q8NH92 325 aa12.92□□□□□ -0.34
NUP54-217ENST00000514987 ZNF471Q9BX82 626 aaPredicted RBP12.92□□□□□ -0.34
NUP54-217ENST00000514987 ZNF703Q9H7S9 590 aaPredicted RBP12.92□□□□□ -0.34
NUP54-217ENST00000514987 ZNF701Q9NV72 531 aaPredicted RBP12.92□□□□□ -0.34
NUP54-217ENST00000514987 TEX13DA0A0J9YY54 714 aaPredicted RBP12.91□□□□□ -0.34
NUP54-217ENST00000514987 LNP1A1A4G5 178 aa12.91□□□□□ -0.34
NUP54-217ENST00000514987 TERTO14746 1132 aaKnown RBP12.91□□□□□ -0.34
NUP54-217ENST00000514987 NEURL1O76050 574 aa12.91□□□□□ -0.34
NUP54-217ENST00000514987 MMP7P09237 267 aaPredicted RBP12.91□□□□□ -0.34
NUP54-217ENST00000514987 COX5BP10606 129 aa12.91□□□□□ -0.34
NUP54-217ENST00000514987 LYL1P12980 280 aa12.91□□□□□ -0.34
NUP54-217ENST00000514987 LHX2P50458 406 aa12.91□□□□□ -0.34
NUP54-217ENST00000514987 FAM3AP98173 230 aa12.91□□□□□ -0.34
NUP54-217ENST00000514987 NAAAQ02083 359 aa12.91□□□□□ -0.34
NUP54-217ENST00000514987 HGFACQ04756 655 aa12.91□□□□□ -0.34
NUP54-217ENST00000514987 AIMP2Q13155 320 aaKnown RBP12.91□□□□□ -0.34
NUP54-217ENST00000514987 CCDC157Q569K6 752 aa12.91□□□□□ -0.34
NUP54-217ENST00000514987 PLA2G2CQ5R387 149 aa12.91□□□□□ -0.34
NUP54-217ENST00000514987 SPINK14Q6IE38 97 aa12.91□□□□□ -0.34
NUP54-217ENST00000514987 C6orf201Q7Z4U5 140 aa12.91□□□□□ -0.34
NUP54-217ENST00000514987 STOML3Q8TAV4 291 aa12.91□□□□□ -0.34
NUP54-217ENST00000514987 ABHD3Q8WU67 409 aa12.91□□□□□ -0.34
NUP54-217ENST00000514987 C2orf50Q96LR7 162 aa12.91□□□□□ -0.34
NUP54-217ENST00000514987 C1QTNF5Q9BXJ0 243 aa12.91□□□□□ -0.34
NUP54-217ENST00000514987 NARFLQ9H6Q4 476 aa12.91□□□□□ -0.34
NUP54-217ENST00000514987 DECR2Q9NUI1 292 aa12.91□□□□□ -0.34
NUP54-217ENST00000514987 GLS2Q9UI32 602 aa12.91□□□□□ -0.34
NUP54-217ENST00000514987 ANXA10Q9UJ72 324 aa12.91□□□□□ -0.34
NUP54-217ENST00000514987 MCTS1Q9ULC4 181 aaKnown RBP12.91□□□□□ -0.34
NUP54-217ENST00000514987 CSAG2Q9Y5P2 127 aa12.91□□□□□ -0.34
NUP54-217ENST00000514987 KCNMB2Q9Y691 235 aa12.91□□□□□ -0.34
NUP54-217ENST00000514987 ZNF724A8MTY0 619 aa12.9□□□□□ -0.34
NUP54-217ENST00000514987 PRSS44E7EML9 344 aa12.9□□□□□ -0.34
NUP54-217ENST00000514987 F5H0A9 414 aaPredicted RBP12.9□□□□□ -0.34
NUP54-217ENST00000514987 SDCBPO00560 298 aaPredicted RBP12.9□□□□□ -0.34
NUP54-217ENST00000514987 IFNA2P01563 188 aa12.9□□□□□ -0.34
NUP54-217ENST00000514987 CTSDP07339 412 aaPredicted RBP12.9□□□□□ -0.34
NUP54-217ENST00000514987 CD59P13987 128 aa12.9□□□□□ -0.34
NUP54-217ENST00000514987 LUMP51884 338 aaPredicted RBP12.9□□□□□ -0.34
NUP54-217ENST00000514987 SUPT4H1P63272 117 aaKnown RBP12.9□□□□□ -0.34
NUP54-217ENST00000514987 ATXN7L3Q14CW9 347 aaPredicted RBP12.9□□□□□ -0.34
NUP54-217ENST00000514987 SLC9A3R2Q15599 337 aa12.9□□□□□ -0.34
NUP54-217ENST00000514987 NKAPLQ5M9Q1 402 aa12.9□□□□□ -0.34
NUP54-217ENST00000514987 PRSS54Q6PEW0 395 aa12.9□□□□□ -0.34
NUP54-217ENST00000514987 COLCA1Q6ZS62 124 aa12.9□□□□□ -0.34
NUP54-217ENST00000514987 MOB3CQ70IA8 216 aa12.9□□□□□ -0.34
NUP54-217ENST00000514987 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.9□□□□□ -0.34
NUP54-217ENST00000514987 CCDC36Q8IYA8 594 aa12.9□□□□□ -0.34
NUP54-217ENST00000514987 OSR2Q8N2R0 312 aa12.9□□□□□ -0.34
NUP54-217ENST00000514987 BVESQ8NE79 360 aa12.9□□□□□ -0.34
NUP54-217ENST00000514987 DCUN1D4Q92564 292 aa12.9□□□□□ -0.34
NUP54-217ENST00000514987 ZNF845Q96IR2 970 aaPredicted RBP12.9□□□□□ -0.34
NUP54-217ENST00000514987 CMSS1Q9BQ75 279 aaKnown RBP12.9□□□□□ -0.34
NUP54-217ENST00000514987 METTL8Q9H825 291 aaKnown RBP12.9□□□□□ -0.34
NUP54-217ENST00000514987 NECAP2Q9NVZ3 263 aa12.9□□□□□ -0.34
NUP54-217ENST00000514987 C1orf123Q9NWV4 160 aa12.9□□□□□ -0.34
NUP54-217ENST00000514987 FOXJ2Q9P0K8 574 aa12.9□□□□□ -0.34
NUP54-217ENST00000514987 DNAJB11Q9UBS4 358 aa12.9□□□□□ -0.34
NUP54-217ENST00000514987 PMS2P1A4D2B8 440 aa12.9□□□□□ -0.35
NUP54-217ENST00000514987 ZSCAN5BA6NJL1 495 aa12.9□□□□□ -0.35
NUP54-217ENST00000514987 POM121CA8CG34 1229 aa12.9□□□□□ -0.35
NUP54-217ENST00000514987 ZNF587BE7ETH6 402 aa12.9□□□□□ -0.35
NUP54-217ENST00000514987 F8VVB4 439 aa12.9□□□□□ -0.35
NUP54-217ENST00000514987 F8VWA3 439 aa12.9□□□□□ -0.35
NUP54-217ENST00000514987 TPD52L2O43399 206 aaKnown RBP12.9□□□□□ -0.35
NUP54-217ENST00000514987 MT-CO3P00414 261 aa12.9□□□□□ -0.35
NUP54-217ENST00000514987 ZNF708P17019 499 aa12.9□□□□□ -0.35
NUP54-217ENST00000514987 CHATP28329 748 aa12.9□□□□□ -0.35
NUP54-217ENST00000514987 RBMXP38159 391 aaKnown RBP12.9□□□□□ -0.35
NUP54-217ENST00000514987 ZNF92Q03936 586 aa12.9□□□□□ -0.35
NUP54-217ENST00000514987 PDZK1IP1Q13113 114 aa12.9□□□□□ -0.35
NUP54-217ENST00000514987 OR1C1Q15619 314 aa12.9□□□□□ -0.35
NUP54-217ENST00000514987 PAN3Q58A45 887 aaKnown RBP12.9□□□□□ -0.35
NUP54-217ENST00000514987 DMRTC1Q5HYR2 192 aa12.9□□□□□ -0.35
NUP54-217ENST00000514987 PABPC1L2AQ5JQF8 200 aa12.9□□□□□ -0.35
NUP54-217ENST00000514987 FAM209AQ5JX71 171 aa12.9□□□□□ -0.35
NUP54-217ENST00000514987 DCAF10Q5QP82 559 aa12.9□□□□□ -0.35
NUP54-217ENST00000514987 TSPO2Q5TGU0 170 aa12.9□□□□□ -0.35
NUP54-217ENST00000514987 SGPP2Q8IWX5 399 aa12.9□□□□□ -0.35
NUP54-217ENST00000514987 FER1L6-AS2Q96M78 137 aa12.9□□□□□ -0.35
NUP54-217ENST00000514987 TMA7Q9Y2S6 64 aaKnown RBP12.9□□□□□ -0.35
NUP54-217ENST00000514987 A0A0C4DFX4 3053 aa12.89□□□□□ -0.35
NUP54-217ENST00000514987 PCSK5Q92824 1860 aa12.89□□□□□ -0.35
NUP54-217ENST00000514987 TECTAO75443 2155 aa12.89□□□□□ -0.35
NUP54-217ENST00000514987 IGKV1-27A0A075B6S5 117 aa12.89□□□□□ -0.35
NUP54-217ENST00000514987 FAM90A10PA6NDY2 464 aa12.89□□□□□ -0.35
NUP54-217ENST00000514987 FAM90A18PA6NE21 464 aa12.89□□□□□ -0.35
NUP54-217ENST00000514987 FAM90A16PA6NEW6 464 aa12.89□□□□□ -0.35
NUP54-217ENST00000514987 FAM90A20PA6NIJ5 464 aa12.89□□□□□ -0.35
NUP54-217ENST00000514987 FAM90A8PA6NJQ4 464 aa12.89□□□□□ -0.35
NUP54-217ENST00000514987 FAM90A7PA6NKC0 464 aa12.89□□□□□ -0.35
NUP54-217ENST00000514987 FAM90A22PA8MWA6 464 aa12.89□□□□□ -0.35
NUP54-217ENST00000514987 FAM90A12PA8MX19 464 aa12.89□□□□□ -0.35
NUP54-217ENST00000514987 FAM90A5PA8MXJ8 464 aa12.89□□□□□ -0.35
NUP54-217ENST00000514987 FAM90A23PA8MXZ1 464 aa12.89□□□□□ -0.35
NUP54-217ENST00000514987 FAM90A15PP0C7V4 464 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms