RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 hCG_1807616A0A1W2PRN6 198 aa12.09□□□□□ -0.47
SKA1-202ENST00000398452 METTL21EPA6NDL7 271 aa12.09□□□□□ -0.47
SKA1-202ENST00000398452 F5H5P2 479 aa12.09□□□□□ -0.47
SKA1-202ENST00000398452 J3QT63 122 aa12.09□□□□□ -0.47
SKA1-202ENST00000398452 NAT2P11245 290 aa12.09□□□□□ -0.47
SKA1-202ENST00000398452 CFPP27918 469 aa12.09□□□□□ -0.47
SKA1-202ENST00000398452 LOXP28300 417 aaPredicted RBP12.09□□□□□ -0.47
SKA1-202ENST00000398452 BMXP51813 675 aa12.09□□□□□ -0.47
SKA1-202ENST00000398452 ART1P52961 327 aa12.09□□□□□ -0.47
SKA1-202ENST00000398452 PDZK1IP1Q13113 114 aa12.09□□□□□ -0.47
SKA1-202ENST00000398452 MSMPQ1L6U9 139 aa12.09□□□□□ -0.47
SKA1-202ENST00000398452 PCGF3Q3KNV8 242 aa12.09□□□□□ -0.47
SKA1-202ENST00000398452 C2orf76Q3KRA6 126 aa12.09□□□□□ -0.47
SKA1-202ENST00000398452 SLC22A6Q4U2R8 563 aa12.09□□□□□ -0.47
SKA1-202ENST00000398452 UBE2NLQ5JXB2 153 aa12.09□□□□□ -0.47
SKA1-202ENST00000398452 FIP1L1Q6UN15 594 aaKnown RBP12.09□□□□□ -0.47
SKA1-202ENST00000398452 LINC00299Q6ZSB3 139 aa12.09□□□□□ -0.47
SKA1-202ENST00000398452 SLC25A26Q70HW3 274 aa12.09□□□□□ -0.47
SKA1-202ENST00000398452 OR2W3Q7Z3T1 314 aa12.09□□□□□ -0.47
SKA1-202ENST00000398452 OR51D1Q8NGF3 324 aa12.09□□□□□ -0.47
SKA1-202ENST00000398452 OR4D6Q8NGJ1 314 aa12.09□□□□□ -0.47
SKA1-202ENST00000398452 OR51F2Q8NH61 342 aa12.09□□□□□ -0.47
SKA1-202ENST00000398452 KCNG3Q8TAE7 436 aa12.09□□□□□ -0.47
SKA1-202ENST00000398452 TBC1D15Q8TC07 691 aa12.09□□□□□ -0.47
SKA1-202ENST00000398452 CMTM3Q96MX0 182 aa12.09□□□□□ -0.47
SKA1-202ENST00000398452 URM1Q9BTM9 101 aaKnown RBP12.09□□□□□ -0.47
SKA1-202ENST00000398452 PKIBQ9C010 78 aa12.09□□□□□ -0.47
SKA1-202ENST00000398452 NXF2Q9GZY0 626 aaKnown RBP12.09□□□□□ -0.47
SKA1-202ENST00000398452 PPP1R3EQ9H7J1 279 aa12.09□□□□□ -0.47
SKA1-202ENST00000398452 FN3KRPQ9HA64 309 aa12.09□□□□□ -0.47
SKA1-202ENST00000398452 UBTD1Q9HAC8 227 aa12.09□□□□□ -0.47
SKA1-202ENST00000398452 CBLN4Q9NTU7 201 aa12.09□□□□□ -0.47
SKA1-202ENST00000398452 IL19Q9UHD0 177 aa12.09□□□□□ -0.47
SKA1-202ENST00000398452 LRBAP50851 2863 aa12.08□□□□□ -0.47
SKA1-202ENST00000398452 ZSCAN5BA6NJL1 495 aa12.08□□□□□ -0.48
SKA1-202ENST00000398452 C17orf100A8MU93 164 aa12.08□□□□□ -0.48
SKA1-202ENST00000398452 H0YL77 283 aa12.08□□□□□ -0.48
SKA1-202ENST00000398452 MLNRO43193 412 aa12.08□□□□□ -0.48
SKA1-202ENST00000398452 SPRY1O43609 319 aaPredicted RBP12.08□□□□□ -0.48
SKA1-202ENST00000398452 CRTAPO75718 401 aaPredicted RBP12.08□□□□□ -0.48
SKA1-202ENST00000398452 SCGNO76038 276 aa12.08□□□□□ -0.48
SKA1-202ENST00000398452 HTR3BO95264 441 aa12.08□□□□□ -0.48
SKA1-202ENST00000398452 PAHP00439 452 aa12.08□□□□□ -0.48
SKA1-202ENST00000398452 IRF2P14316 349 aa12.08□□□□□ -0.48
SKA1-202ENST00000398452 SERPINA2P20848 420 aa12.08□□□□□ -0.48
SKA1-202ENST00000398452 THBS2P35442 1172 aa12.08□□□□□ -0.48
SKA1-202ENST00000398452 CD200P41217 278 aa12.08□□□□□ -0.48
SKA1-202ENST00000398452 TESK1Q15569 626 aa12.08□□□□□ -0.48
SKA1-202ENST00000398452 FAM209AQ5JX71 171 aa12.08□□□□□ -0.48
SKA1-202ENST00000398452 SPANXN2Q5MJ10 180 aa12.08□□□□□ -0.48
SKA1-202ENST00000398452 Q6ZR03 302 aa12.08□□□□□ -0.48
SKA1-202ENST00000398452 TMEM200AQ86VY9 491 aa12.08□□□□□ -0.48
SKA1-202ENST00000398452 LRRC28Q86X40 367 aaPredicted RBP12.08□□□□□ -0.48
SKA1-202ENST00000398452 SAXO1Q8IYX7 474 aa12.08□□□□□ -0.48
SKA1-202ENST00000398452 CELF2-AS1Q8N7Q2 184 aa12.08□□□□□ -0.48
SKA1-202ENST00000398452 PXT1Q8NFP0 134 aa12.08□□□□□ -0.48
SKA1-202ENST00000398452 OR11L1Q8NGX0 322 aa12.08□□□□□ -0.48
SKA1-202ENST00000398452 S100ZQ8WXG8 99 aa12.08□□□□□ -0.48
SKA1-202ENST00000398452 RAB40AQ8WXH6 277 aa12.08□□□□□ -0.48
SKA1-202ENST00000398452 S100A16Q96FQ6 103 aaKnown RBP12.08□□□□□ -0.48
SKA1-202ENST00000398452 DIRAS2Q96HU8 199 aa12.08□□□□□ -0.48
SKA1-202ENST00000398452 OR2V2Q96R30 315 aa12.08□□□□□ -0.48
SKA1-202ENST00000398452 NKX3-1Q99801 234 aaPredicted RBP12.08□□□□□ -0.48
SKA1-202ENST00000398452 VRK1Q99986 396 aaPredicted RBP12.08□□□□□ -0.48
SKA1-202ENST00000398452 RAB1BQ9H0U4 201 aa12.08□□□□□ -0.48
SKA1-202ENST00000398452 RAB22AQ9UL26 194 aa12.08□□□□□ -0.48
SKA1-202ENST00000398452 CTDSP2O14595 271 aa12.07□□□□□ -0.48
SKA1-202ENST00000398452 HPGDSO60760 199 aa12.07□□□□□ -0.48
SKA1-202ENST00000398452 MPIG6BO95866 241 aa12.07□□□□□ -0.48
SKA1-202ENST00000398452 IGHV1-46P01743 117 aa12.07□□□□□ -0.48
SKA1-202ENST00000398452 APOA1P02647 267 aa12.07□□□□□ -0.48
SKA1-202ENST00000398452 CD37P11049 281 aa12.07□□□□□ -0.48
SKA1-202ENST00000398452 GTF2F2P13984 249 aa12.07□□□□□ -0.48
SKA1-202ENST00000398452 TLE4Q04727 773 aa12.07□□□□□ -0.48
SKA1-202ENST00000398452 IL24Q13007 206 aa12.07□□□□□ -0.48
SKA1-202ENST00000398452 ZNF154Q13106 437 aa12.07□□□□□ -0.48
SKA1-202ENST00000398452 FAM166AQ6J272 317 aa12.07□□□□□ -0.48
SKA1-202ENST00000398452 Q8IYB0 196 aa12.07□□□□□ -0.48
SKA1-202ENST00000398452 OR6Q1Q8NGQ2 317 aa12.07□□□□□ -0.48
SKA1-202ENST00000398452 ERGIC1Q969X5 290 aa12.07□□□□□ -0.48
SKA1-202ENST00000398452 PTX4Q96A99 478 aa12.07□□□□□ -0.48
SKA1-202ENST00000398452 TMEM59Q9BXS4 323 aa12.07□□□□□ -0.48
SKA1-202ENST00000398452 ATG5Q9H1Y0 275 aa12.07□□□□□ -0.48
SKA1-202ENST00000398452 CLEC4MQ9H2X3 399 aaPredicted RBP12.07□□□□□ -0.48
SKA1-202ENST00000398452 OR51I2Q9H344 312 aa12.07□□□□□ -0.48
SKA1-202ENST00000398452 DIABLOQ9NR28 239 aa12.07□□□□□ -0.48
SKA1-202ENST00000398452 UFSP2Q9NUQ7 469 aa12.07□□□□□ -0.48
SKA1-202ENST00000398452 RHBDL2Q9NX52 303 aa12.07□□□□□ -0.48
SKA1-202ENST00000398452 OR5V1Q9UGF6 321 aa12.07□□□□□ -0.48
SKA1-202ENST00000398452 CADP27708 2225 aa12.07□□□□□ -0.48
SKA1-202ENST00000398452 TEP1Q99973 2627 aaKnown RBP12.06□□□□□ -0.48
SKA1-202ENST00000398452 IGKV1-27A0A075B6S5 117 aa12.06□□□□□ -0.48
SKA1-202ENST00000398452 A0A0B4J203 849 aa12.06□□□□□ -0.48
SKA1-202ENST00000398452 LRRC30A6NM36 301 aa12.06□□□□□ -0.48
SKA1-202ENST00000398452 H3BUI4 141 aa12.06□□□□□ -0.48
SKA1-202ENST00000398452 CDIPTO14735 213 aa12.06□□□□□ -0.48
SKA1-202ENST00000398452 WIPF1O43516 503 aa12.06□□□□□ -0.48
SKA1-202ENST00000398452 ANGPTL7O43827 346 aa12.06□□□□□ -0.48
SKA1-202ENST00000398452 RAB6AP20340 208 aa12.06□□□□□ -0.48
SKA1-202ENST00000398452 ZP1P60852 638 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms