RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 IL5RAQ01344 420 aa6.98□□□□□ -1.29
SHKBP1-220ENST00000599716 BLMHQ13867 455 aa6.98□□□□□ -1.29
SHKBP1-220ENST00000599716 C11orf91Q3C1V1 193 aa6.98□□□□□ -1.29
SHKBP1-220ENST00000599716 TEX30Q5JUR7 227 aa6.98□□□□□ -1.29
SHKBP1-220ENST00000599716 TMEM200BQ69YZ2 307 aa6.98□□□□□ -1.29
SHKBP1-220ENST00000599716 ZNF770Q6IQ21 691 aaPredicted RBP6.98□□□□□ -1.29
SHKBP1-220ENST00000599716 ZDHHC23Q8IYP9 409 aa6.98□□□□□ -1.29
SHKBP1-220ENST00000599716 OR8B12Q8NGG6 310 aa6.98□□□□□ -1.29
SHKBP1-220ENST00000599716 OR10Z1Q8NGY1 313 aa6.98□□□□□ -1.29
SHKBP1-220ENST00000599716 THEM6Q8WUY1 208 aa6.98□□□□□ -1.29
SHKBP1-220ENST00000599716 MCUR1Q96AQ8 359 aa6.98□□□□□ -1.29
SHKBP1-220ENST00000599716 MED30Q96HR3 178 aa6.98□□□□□ -1.29
SHKBP1-220ENST00000599716 NSMCE2Q96MF7 247 aa6.98□□□□□ -1.29
SHKBP1-220ENST00000599716 INTS14Q96SY0 518 aa6.98□□□□□ -1.29
SHKBP1-220ENST00000599716 CDCA4Q9BXL8 241 aa6.98□□□□□ -1.29
SHKBP1-220ENST00000599716 MEGF9Q9H1U4 602 aa6.98□□□□□ -1.29
SHKBP1-220ENST00000599716 OR51V1Q9H2C8 321 aa6.98□□□□□ -1.29
SHKBP1-220ENST00000599716 IL1RAPQ9NPH3 570 aa6.98□□□□□ -1.29
SHKBP1-220ENST00000599716 TRBV23-1A0A0A0MS06 115 aa6.97□□□□□ -1.29
SHKBP1-220ENST00000599716 WI2-2373I1.2A0A1W2PRP0 233 aa6.97□□□□□ -1.29
SHKBP1-220ENST00000599716 A6NIN4 97 aa6.97□□□□□ -1.29
SHKBP1-220ENST00000599716 SH2D7A6NKC9 451 aaPredicted RBP6.97□□□□□ -1.29
SHKBP1-220ENST00000599716 RFPL4AA6NLU0 287 aa6.97□□□□□ -1.29
SHKBP1-220ENST00000599716 PRR32B1ATL7 298 aa6.97□□□□□ -1.29
SHKBP1-220ENST00000599716 RFPL4AL1F8VTS6 287 aa6.97□□□□□ -1.29
SHKBP1-220ENST00000599716 CCDC22O60826 627 aa6.97□□□□□ -1.29
SHKBP1-220ENST00000599716 CCNB2O95067 398 aa6.97□□□□□ -1.29
SHKBP1-220ENST00000599716 GSTT1P30711 240 aa6.97□□□□□ -1.29
SHKBP1-220ENST00000599716 SLC25A1P53007 311 aa6.97□□□□□ -1.29
SHKBP1-220ENST00000599716 KRTAP10-11P60412 298 aa6.97□□□□□ -1.29
SHKBP1-220ENST00000599716 SSX2Q16385 188 aa6.97□□□□□ -1.29
SHKBP1-220ENST00000599716 HAGHLQ6PII5 290 aaPredicted RBP6.97□□□□□ -1.29
SHKBP1-220ENST00000599716 C10orf99Q6UWK7 81 aa6.97□□□□□ -1.29
SHKBP1-220ENST00000599716 RASSF6Q6ZTQ3 369 aa6.97□□□□□ -1.29
SHKBP1-220ENST00000599716 MOB3CQ70IA8 216 aa6.97□□□□□ -1.29
SHKBP1-220ENST00000599716 CSNK2A3Q8NEV1 391 aa6.97□□□□□ -1.29
SHKBP1-220ENST00000599716 BBS1Q8NFJ9 593 aa6.97□□□□□ -1.29
SHKBP1-220ENST00000599716 OR5D13Q8NGL4 314 aa6.97□□□□□ -1.29
SHKBP1-220ENST00000599716 CDRT15Q96T59 188 aa6.97□□□□□ -1.29
SHKBP1-220ENST00000599716 NIPSNAP1Q9BPW8 284 aa6.97□□□□□ -1.29
SHKBP1-220ENST00000599716 ELAC2Q9BQ52 826 aaKnown RBP6.97□□□□□ -1.29
SHKBP1-220ENST00000599716 NPFFR1Q9GZQ6 430 aa6.97□□□□□ -1.29
SHKBP1-220ENST00000599716 FAM107BQ9H098 131 aa6.97□□□□□ -1.29
SHKBP1-220ENST00000599716 FAM234AQ9H0X4 552 aa6.97□□□□□ -1.29
SHKBP1-220ENST00000599716 DNTTIP1Q9H147 329 aa6.97□□□□□ -1.29
SHKBP1-220ENST00000599716 MYLK2Q9H1R3 596 aa6.97□□□□□ -1.29
SHKBP1-220ENST00000599716 OR51I2Q9H344 312 aa6.97□□□□□ -1.29
SHKBP1-220ENST00000599716 ZNF446Q9NWS9 450 aa6.97□□□□□ -1.29
SHKBP1-220ENST00000599716 CD300AQ9UGN4 299 aa6.97□□□□□ -1.29
SHKBP1-220ENST00000599716 MPC1Q9Y5U8 109 aa6.97□□□□□ -1.29
SHKBP1-220ENST00000599716 A6NDX4 124 aa6.96□□□□□ -1.3
SHKBP1-220ENST00000599716 TMEM210A6NLX4 147 aa6.96□□□□□ -1.3
SHKBP1-220ENST00000599716 RIIAD1A6NNX1 92 aa6.96□□□□□ -1.3
SHKBP1-220ENST00000599716 H3BSH0 61 aa6.96□□□□□ -1.3
SHKBP1-220ENST00000599716 INMTO95050 263 aa6.96□□□□□ -1.3
SHKBP1-220ENST00000599716 CST4P01036 141 aa6.96□□□□□ -1.3
SHKBP1-220ENST00000599716 FAHP16930 419 aa6.96□□□□□ -1.3
SHKBP1-220ENST00000599716 CD24P25063 80 aa6.96□□□□□ -1.3
SHKBP1-220ENST00000599716 HOXD3P31249 432 aaPredicted RBP6.96□□□□□ -1.3
SHKBP1-220ENST00000599716 RPL31P62899 125 aaKnown RBP6.96□□□□□ -1.3
SHKBP1-220ENST00000599716 FAM76BQ5HYJ3 339 aa6.96□□□□□ -1.3
SHKBP1-220ENST00000599716 DEFB121Q5J5C9 76 aa6.96□□□□□ -1.3
SHKBP1-220ENST00000599716 PLBD1Q6P4A8 553 aa6.96□□□□□ -1.3
SHKBP1-220ENST00000599716 CCDC121Q6ZUS5 278 aa6.96□□□□□ -1.3
SHKBP1-220ENST00000599716 THAP5Q7Z6K1 395 aa6.96□□□□□ -1.3
SHKBP1-220ENST00000599716 CPLX4Q7Z7G2 160 aa6.96□□□□□ -1.3
SHKBP1-220ENST00000599716 NDUFA11Q86Y39 141 aa6.96□□□□□ -1.3
SHKBP1-220ENST00000599716 HIST2H2ABQ8IUE6 130 aaPredicted RBP6.96□□□□□ -1.3
SHKBP1-220ENST00000599716 OR2T33Q8NG76 320 aa6.96□□□□□ -1.3
SHKBP1-220ENST00000599716 OR4S1Q8NGB4 309 aa6.96□□□□□ -1.3
SHKBP1-220ENST00000599716 OR52H1Q8NGJ2 320 aa6.96□□□□□ -1.3
SHKBP1-220ENST00000599716 OR2T27Q8NH04 317 aa6.96□□□□□ -1.3
SHKBP1-220ENST00000599716 FAM81AQ8TBF8 368 aa6.96□□□□□ -1.3
SHKBP1-220ENST00000599716 WIPF2Q8TF74 440 aaPredicted RBP6.96□□□□□ -1.3
SHKBP1-220ENST00000599716 AQP3Q92482 292 aa6.96□□□□□ -1.3
SHKBP1-220ENST00000599716 RBMXL1Q96E39 390 aaKnown RBP6.96□□□□□ -1.3
SHKBP1-220ENST00000599716 DMRTB1Q96MA1 342 aa6.96□□□□□ -1.3
SHKBP1-220ENST00000599716 RANBP3Q9H6Z4 567 aaPredicted RBP6.96□□□□□ -1.3
SHKBP1-220ENST00000599716 OR14J1Q9UGF5 321 aa6.96□□□□□ -1.3
SHKBP1-220ENST00000599716 MAGEL2Q9UJ55 1249 aa6.96□□□□□ -1.3
SHKBP1-220ENST00000599716 TCF19Q9Y242 345 aa6.96□□□□□ -1.3
SHKBP1-220ENST00000599716 LRP12Q9Y561 859 aa6.96□□□□□ -1.3
SHKBP1-220ENST00000599716 HUWE1Q7Z6Z7 4374 aaKnown RBP6.95□□□□□ -1.3
SHKBP1-220ENST00000599716 C3orf84H3BNL1 204 aa6.95□□□□□ -1.3
SHKBP1-220ENST00000599716 NDUFAB1O14561 156 aa6.95□□□□□ -1.3
SHKBP1-220ENST00000599716 MAGEB4O15481 346 aaPredicted RBP6.95□□□□□ -1.3
SHKBP1-220ENST00000599716 XPNPEP2O43895 674 aa6.95□□□□□ -1.3
SHKBP1-220ENST00000599716 MTRF1O75570 445 aaKnown RBP6.95□□□□□ -1.3
SHKBP1-220ENST00000599716 GLCEO94923 617 aa6.95□□□□□ -1.3
SHKBP1-220ENST00000599716 IFNGP01579 166 aa6.95□□□□□ -1.3
SHKBP1-220ENST00000599716 ARG1P05089 322 aa6.95□□□□□ -1.3
SHKBP1-220ENST00000599716 LYNP07948 512 aa6.95□□□□□ -1.3
SHKBP1-220ENST00000599716 MRPL3P09001 348 aaKnown RBP6.95□□□□□ -1.3
SHKBP1-220ENST00000599716 HSD17B1P14061 328 aa6.95□□□□□ -1.3
SHKBP1-220ENST00000599716 ZNF3P17036 446 aa6.95□□□□□ -1.3
SHKBP1-220ENST00000599716 CD33P20138 364 aa6.95□□□□□ -1.3
SHKBP1-220ENST00000599716 CFL1P23528 166 aaKnown RBP6.95□□□□□ -1.3
SHKBP1-220ENST00000599716 PRDX2P32119 198 aa6.95□□□□□ -1.3
SHKBP1-220ENST00000599716 HMGA2P52926 109 aa6.95□□□□□ -1.3
SHKBP1-220ENST00000599716 LGALS4P56470 323 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 180.8 ms