RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 ADAM8P78325 824 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 MRPS11P82912 194 aaKnown RBP4.66□□□□□ -1.66
USP28-213ENST00000544967 INSM1Q01101 510 aaPredicted RBP4.66□□□□□ -1.66
USP28-213ENST00000544967 CFHR1Q03591 330 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 FHL1Q13642 323 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 CHRFAM7AQ494W8 412 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 EMC4Q5J8M3 183 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 DPPA3Q6W0C5 159 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 SYT9Q86SS6 491 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 ZNF573Q86YE8 665 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 ZNF584Q8IVC4 421 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 ZNF433Q8N7K0 673 aaPredicted RBP4.66□□□□□ -1.66
USP28-213ENST00000544967 ADPRHL1Q8NDY3 354 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 OR2L8Q8NGY9 312 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 WNT2BQ93097 391 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 CTDSP1Q9GZU7 261 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 CST11Q9H112 138 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 GSX1Q9H4S2 264 aaPredicted RBP4.66□□□□□ -1.66
USP28-213ENST00000544967 CDH20Q9HBT6 801 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 CPAMD8Q8IZJ3 1885 aa4.66□□□□□ -1.66
USP28-213ENST00000544967 YLPM1P49750 1951 aaKnown RBP4.65□□□□□ -1.66
USP28-213ENST00000544967 DNAH14Q0VDD8 3507 aa4.65□□□□□ -1.66
USP28-213ENST00000544967 IGHV1OR21-1A0A087WYE8 117 aa4.65□□□□□ -1.66
USP28-213ENST00000544967 A0A1W2PPV9 198 aa4.65□□□□□ -1.66
USP28-213ENST00000544967 FITM1A5D6W6 292 aa4.65□□□□□ -1.66
USP28-213ENST00000544967 ELOA3DA6NLF2 546 aaPredicted RBP4.65□□□□□ -1.66
USP28-213ENST00000544967 C4orf47A7E2U8 309 aa4.65□□□□□ -1.66
USP28-213ENST00000544967 CDRT15L2A8MXV6 281 aa4.65□□□□□ -1.66
USP28-213ENST00000544967 CDC14BO60729 498 aa4.65□□□□□ -1.66
USP28-213ENST00000544967 GPANK1O95872 356 aa4.65□□□□□ -1.66
USP28-213ENST00000544967 TXNDC12O95881 172 aa4.65□□□□□ -1.66
USP28-213ENST00000544967 IGFBP3P17936 291 aaPredicted RBP4.65□□□□□ -1.66
USP28-213ENST00000544967 CSNK2A2P19784 350 aaPredicted RBP4.65□□□□□ -1.66
USP28-213ENST00000544967 PTNP21246 168 aa4.65□□□□□ -1.66
USP28-213ENST00000544967 FPR2P25090 351 aa4.65□□□□□ -1.66
USP28-213ENST00000544967 LSSP48449 732 aa4.65□□□□□ -1.66
USP28-213ENST00000544967 NCBP2P52298 156 aaKnown RBP eCLIP4.65□□□□□ -1.66
USP28-213ENST00000544967 SLC35A1P78382 337 aa4.65□□□□□ -1.66
USP28-213ENST00000544967 EIF3IQ13347 325 aaKnown RBP4.65□□□□□ -1.66
USP28-213ENST00000544967 ZIC1Q15915 447 aa4.65□□□□□ -1.66
USP28-213ENST00000544967 NKAIN1Q4KMZ8 207 aa4.65□□□□□ -1.66
USP28-213ENST00000544967 TRMT12Q53H54 448 aaKnown RBP4.65□□□□□ -1.66
USP28-213ENST00000544967 ALG10BQ5I7T1 473 aa4.65□□□□□ -1.66
USP28-213ENST00000544967 AKR1C8PQ5T2L2 129 aa4.65□□□□□ -1.66
USP28-213ENST00000544967 GPR157Q5UAW9 335 aa4.65□□□□□ -1.66
USP28-213ENST00000544967 OR4C11Q6IEV9 310 aa4.65□□□□□ -1.66
USP28-213ENST00000544967 FBXW12Q6X9E4 464 aa4.65□□□□□ -1.66
USP28-213ENST00000544967 THSD4Q6ZMP0 1018 aa4.65□□□□□ -1.66
USP28-213ENST00000544967 KCTD9Q7L273 389 aa4.65□□□□□ -1.66
USP28-213ENST00000544967 TMED4Q7Z7H5 227 aa4.65□□□□□ -1.66
USP28-213ENST00000544967 CACUL1Q86Y37 369 aa4.65□□□□□ -1.66
USP28-213ENST00000544967 TGIF2LYQ8IUE0 185 aa4.65□□□□□ -1.66
USP28-213ENST00000544967 FAM71E2Q8N5Q1 922 aa4.65□□□□□ -1.66
USP28-213ENST00000544967 TSACCQ96A04 125 aaPredicted RBP4.65□□□□□ -1.66
USP28-213ENST00000544967 IP6K3Q96PC2 410 aa4.65□□□□□ -1.66
USP28-213ENST00000544967 SLC6A7Q99884 636 aa4.65□□□□□ -1.66
USP28-213ENST00000544967 PDCD1LG2Q9BQ51 273 aa4.65□□□□□ -1.66
USP28-213ENST00000544967 CNTNAP3Q9BZ76 1288 aa4.65□□□□□ -1.66
USP28-213ENST00000544967 OR5AC2Q9NZP5 309 aa4.65□□□□□ -1.66
USP28-213ENST00000544967 CES1P1Q9UKY3 287 aa4.65□□□□□ -1.66
USP28-213ENST00000544967 SH2B3Q9UQQ2 575 aa4.65□□□□□ -1.66
USP28-213ENST00000544967 ENTPD2Q9Y5L3 495 aa4.65□□□□□ -1.66
USP28-213ENST00000544967 PUS1Q9Y606 427 aaKnown RBP eCLIP4.65□□□□□ -1.66
USP28-213ENST00000544967 A0A0A6YYC8 382 aaPredicted RBP4.65□□□□□ -1.67
USP28-213ENST00000544967 BORCS7-ASMTA0A0B4J1R7 106 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 A0A0B4J2E0 115 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 A0A1B0GX12 115 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 ZC3H12DA2A288 527 aaKnown RBP4.65□□□□□ -1.67
USP28-213ENST00000544967 TMEM8BA6NDV4 472 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 I3L1I5 382 aaPredicted RBP4.65□□□□□ -1.67
USP28-213ENST00000544967 GDF9O60383 454 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 STK17BO94768 372 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 HSPB1P04792 205 aaKnown RBP4.65□□□□□ -1.67
USP28-213ENST00000544967 RPLP1P05386 114 aaKnown RBP4.65□□□□□ -1.67
USP28-213ENST00000544967 MRPL3P09001 348 aaKnown RBP4.65□□□□□ -1.67
USP28-213ENST00000544967 NID1P14543 1247 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 RPS10P46783 165 aaKnown RBP4.65□□□□□ -1.67
USP28-213ENST00000544967 ZNF84P51523 738 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 NANOS3P60323 173 aaKnown RBP4.65□□□□□ -1.67
USP28-213ENST00000544967 OR1Q1Q15612 314 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 ZNF468Q5VIY5 522 aaPredicted RBP4.65□□□□□ -1.67
USP28-213ENST00000544967 CYB5R2Q6BCY4 276 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 OR2A2Q6IF42 318 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 ZNF529Q6P280 563 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 CDC20BQ86Y33 519 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 SLC37A2Q8TED4 501 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 HOXB13Q92826 284 aaPredicted RBP4.65□□□□□ -1.67
USP28-213ENST00000544967 KLK6Q92876 244 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 RAB39BQ96DA2 213 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 GNRHR2Q96P88 292 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 HIST1H2BLQ99880 126 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 AMDHD2Q9Y303 409 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 PCSK5Q92824 1860 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 DCTN6O00399 190 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 EREGO14944 169 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 ZNF264O43296 627 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 TMPRSS11DO60235 418 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 ZNF354AO60765 605 aaPredicted RBP4.65□□□□□ -1.67
USP28-213ENST00000544967 SAP30O75446 220 aa4.65□□□□□ -1.67
USP28-213ENST00000544967 MT-ATP6P00846 226 aa4.65□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms