RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 CCDC159P0C7I6 412 aa16.29■□□□□ 0.2
SQSTM1-215ENST00000514093 PIPP12273 146 aaPredicted RBP16.29■□□□□ 0.2
SQSTM1-215ENST00000514093 SMIM11AP58511 58 aa16.29■□□□□ 0.2
SQSTM1-215ENST00000514093 TSPAN31Q12999 210 aa16.29■□□□□ 0.2
SQSTM1-215ENST00000514093 CRMP1Q14194 572 aa16.29■□□□□ 0.2
SQSTM1-215ENST00000514093 SNCBQ16143 134 aa16.29■□□□□ 0.2
SQSTM1-215ENST00000514093 CEP78Q5JTW2 689 aa16.29■□□□□ 0.2
SQSTM1-215ENST00000514093 GLYATQ6IB77 296 aa16.29■□□□□ 0.2
SQSTM1-215ENST00000514093 C10orf99Q6UWK7 81 aa16.29■□□□□ 0.2
SQSTM1-215ENST00000514093 OR52L1Q8NGH7 329 aa16.29■□□□□ 0.2
SQSTM1-215ENST00000514093 RNF133Q8WVZ7 376 aa16.29■□□□□ 0.2
SQSTM1-215ENST00000514093 LYZL4Q96KX0 146 aa16.29■□□□□ 0.2
SQSTM1-215ENST00000514093 ZNF488Q96MN9 340 aa16.29■□□□□ 0.2
SQSTM1-215ENST00000514093 HIST1H2AAQ96QV6 131 aa16.29■□□□□ 0.2
SQSTM1-215ENST00000514093 HOPXQ9BPY8 73 aaPredicted RBP16.29■□□□□ 0.2
SQSTM1-215ENST00000514093 ABHD6Q9BV23 337 aa16.29■□□□□ 0.2
SQSTM1-215ENST00000514093 OR51I2Q9H344 312 aa16.29■□□□□ 0.2
SQSTM1-215ENST00000514093 DCAF13Q9NV06 445 aaKnown RBP16.29■□□□□ 0.2
SQSTM1-215ENST00000514093 DYNC2H1Q8NCM8 4307 aaKnown RBP16.29■□□□□ 0.2
SQSTM1-215ENST00000514093 MTRF1O75570 445 aaKnown RBP16.28■□□□□ 0.2
SQSTM1-215ENST00000514093 APOC1P02654 83 aa16.28■□□□□ 0.2
SQSTM1-215ENST00000514093 SPI1P17947 270 aa16.28■□□□□ 0.2
SQSTM1-215ENST00000514093 IFNGR2P38484 337 aa16.28■□□□□ 0.2
SQSTM1-215ENST00000514093 COL10A1Q03692 680 aa16.28■□□□□ 0.2
SQSTM1-215ENST00000514093 KHDC1LQ5JSQ8 128 aa16.28■□□□□ 0.2
SQSTM1-215ENST00000514093 RNF144BQ7Z419 303 aa16.28■□□□□ 0.2
SQSTM1-215ENST00000514093 OR8D4Q8NGM9 314 aa16.28■□□□□ 0.2
SQSTM1-215ENST00000514093 OR6N2Q8NGY6 317 aa16.28■□□□□ 0.2
SQSTM1-215ENST00000514093 FOXRED1Q96CU9 486 aaPredicted RBP16.28■□□□□ 0.2
SQSTM1-215ENST00000514093 C1orf21Q9H246 121 aa16.28■□□□□ 0.2
SQSTM1-215ENST00000514093 ABCB9Q9NP78 766 aa16.28■□□□□ 0.2
SQSTM1-215ENST00000514093 SAMD4AQ9UPU9 718 aaKnown RBP16.28■□□□□ 0.2
SQSTM1-215ENST00000514093 TBL2Q9Y4P3 447 aaKnown RBP16.28■□□□□ 0.2
SQSTM1-215ENST00000514093 HILPDAQ9Y5L2 63 aa16.28■□□□□ 0.2
SQSTM1-215ENST00000514093 CDH10Q9Y6N8 788 aa16.28■□□□□ 0.2
SQSTM1-215ENST00000514093 U3KQK5 164 aa16.28■□□□□ 0.2
SQSTM1-215ENST00000514093 BIRC6Q9NR09 4857 aa16.27■□□□□ 0.2
SQSTM1-215ENST00000514093 ODF3BA8MYP8 253 aa16.27■□□□□ 0.2
SQSTM1-215ENST00000514093 F2RL2O00254 374 aa16.27■□□□□ 0.2
SQSTM1-215ENST00000514093 CHRM2P08172 466 aa16.27■□□□□ 0.2
SQSTM1-215ENST00000514093 DYNC1I2Q13409 638 aaKnown RBP16.27■□□□□ 0.2
SQSTM1-215ENST00000514093 CGB2Q6NT52 195 aa16.27■□□□□ 0.2
SQSTM1-215ENST00000514093 C8orf82Q6P1X6 216 aaPredicted RBP16.27■□□□□ 0.2
SQSTM1-215ENST00000514093 ACP7Q6ZNF0 438 aa16.27■□□□□ 0.2
SQSTM1-215ENST00000514093 ERI1Q8IV48 349 aaKnown RBP16.27■□□□□ 0.2
SQSTM1-215ENST00000514093 LINC00482Q8N8I6 264 aa16.27■□□□□ 0.2
SQSTM1-215ENST00000514093 RP9Q8TA86 221 aaKnown RBP16.27■□□□□ 0.2
SQSTM1-215ENST00000514093 ZNF671Q8TAW3 534 aa16.27■□□□□ 0.2
SQSTM1-215ENST00000514093 DPF1Q92782 380 aa16.27■□□□□ 0.2
SQSTM1-215ENST00000514093 CHID1Q9BWS9 393 aa16.27■□□□□ 0.2
SQSTM1-215ENST00000514093 NMNAT2Q9BZQ4 307 aa16.27■□□□□ 0.2
SQSTM1-215ENST00000514093 RGCCQ9H4X1 137 aa16.27■□□□□ 0.2
SQSTM1-215ENST00000514093 CLIC3O95833 236 aa16.26■□□□□ 0.19
SQSTM1-215ENST00000514093 H2BFMP0C1H6 154 aa16.26■□□□□ 0.19
SQSTM1-215ENST00000514093 COX4I1P13073 169 aa16.26■□□□□ 0.19
SQSTM1-215ENST00000514093 RRM2P31350 389 aa16.26■□□□□ 0.19
SQSTM1-215ENST00000514093 PRDX2P32119 198 aa16.26■□□□□ 0.19
SQSTM1-215ENST00000514093 OPRL1P41146 370 aa16.26■□□□□ 0.19
SQSTM1-215ENST00000514093 NUDT2P50583 147 aa16.26■□□□□ 0.19
SQSTM1-215ENST00000514093 DLX6P56179 175 aa16.26■□□□□ 0.19
SQSTM1-215ENST00000514093 SLC34A1Q06495 639 aa16.26■□□□□ 0.19
SQSTM1-215ENST00000514093 HAGHLQ6PII5 290 aaPredicted RBP16.26■□□□□ 0.19
SQSTM1-215ENST00000514093 BATF2Q8N1L9 274 aa16.26■□□□□ 0.19
SQSTM1-215ENST00000514093 AQP3Q92482 292 aa16.26■□□□□ 0.19
SQSTM1-215ENST00000514093 PCDHGB5Q9Y5G0 923 aa16.26■□□□□ 0.19
SQSTM1-215ENST00000514093 C17orf98A8MV24 154 aa16.25■□□□□ 0.19
SQSTM1-215ENST00000514093 SLC1A7O00341 560 aa16.25■□□□□ 0.19
SQSTM1-215ENST00000514093 GNG3P63215 75 aa16.25■□□□□ 0.19
SQSTM1-215ENST00000514093 LINC01590Q5TEZ4 76 aa16.25■□□□□ 0.19
SQSTM1-215ENST00000514093 ZNF626Q68DY1 528 aa16.25■□□□□ 0.19
SQSTM1-215ENST00000514093 ZNF561Q8N587 486 aa16.25■□□□□ 0.19
SQSTM1-215ENST00000514093 OR13D1Q8NGV5 346 aa16.25■□□□□ 0.19
SQSTM1-215ENST00000514093 INTS14Q96SY0 518 aa16.25■□□□□ 0.19
SQSTM1-215ENST00000514093 FGFR1OP2Q9NVK5 253 aa16.25■□□□□ 0.19
SQSTM1-215ENST00000514093 SEMG1P04279 462 aa16.24■□□□□ 0.19
SQSTM1-215ENST00000514093 DYNLT3P51808 116 aa16.24■□□□□ 0.19
SQSTM1-215ENST00000514093 OR12D2P58182 307 aa16.24■□□□□ 0.19
SQSTM1-215ENST00000514093 MRPL41Q8IXM3 137 aaKnown RBP16.24■□□□□ 0.19
SQSTM1-215ENST00000514093 RNF148Q8N7C7 305 aa16.24■□□□□ 0.19
SQSTM1-215ENST00000514093 OR11H6Q8NGC7 330 aa16.24■□□□□ 0.19
SQSTM1-215ENST00000514093 OR9Q2Q8NGE9 314 aa16.24■□□□□ 0.19
SQSTM1-215ENST00000514093 OR4Q3Q8NH05 313 aa16.24■□□□□ 0.19
SQSTM1-215ENST00000514093 PYURFQ96I23 114 aa16.24■□□□□ 0.19
SQSTM1-215ENST00000514093 MED20Q9H944 212 aa16.24■□□□□ 0.19
SQSTM1-215ENST00000514093 TBC1D23Q9NUY8 699 aa16.24■□□□□ 0.19
SQSTM1-215ENST00000514093 RASL12Q9NYN1 266 aa16.24■□□□□ 0.19
SQSTM1-215ENST00000514093 SH2D7A6NKC9 451 aaPredicted RBP16.23■□□□□ 0.19
SQSTM1-215ENST00000514093 HMGB1P1B2RPK0 211 aaPredicted RBP16.23■□□□□ 0.19
SQSTM1-215ENST00000514093 TK1P04183 234 aa16.23■□□□□ 0.19
SQSTM1-215ENST00000514093 LPLP06858 475 aa16.23■□□□□ 0.19
SQSTM1-215ENST00000514093 NHLRC4P0CG21 123 aaPredicted RBP16.23■□□□□ 0.19
SQSTM1-215ENST00000514093 CD24P25063 80 aa16.23■□□□□ 0.19
SQSTM1-215ENST00000514093 CEACAM21Q3KPI0 293 aa16.23■□□□□ 0.19
SQSTM1-215ENST00000514093 RPL13AP3Q6NVV1 102 aa16.23■□□□□ 0.19
SQSTM1-215ENST00000514093 MOB3CQ70IA8 216 aa16.23■□□□□ 0.19
SQSTM1-215ENST00000514093 CALHM1Q8IU99 346 aa16.23■□□□□ 0.19
SQSTM1-215ENST00000514093 HIST2H2ABQ8IUE6 130 aaPredicted RBP16.23■□□□□ 0.19
SQSTM1-215ENST00000514093 OR4X2Q8NGF9 303 aa16.23■□□□□ 0.19
SQSTM1-215ENST00000514093 OR8B12Q8NGG6 310 aa16.23■□□□□ 0.19
SQSTM1-215ENST00000514093 FAM81AQ8TBF8 368 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms