RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 OR8B4Q96RC9 309 aa13.59□□□□□ -0.23
CCDC28B-204ENST00000469003 SEMA6AQ9H2E6 1030 aa13.59□□□□□ -0.23
CCDC28B-204ENST00000469003 GPR84Q9NQS5 396 aa13.59□□□□□ -0.23
CCDC28B-204ENST00000469003 NUFIP1Q9UHK0 495 aaKnown RBP13.59□□□□□ -0.23
CCDC28B-204ENST00000469003 COPS3Q9UNS2 423 aa13.59□□□□□ -0.23
CCDC28B-204ENST00000469003 RNF114Q9Y508 228 aa13.59□□□□□ -0.23
CCDC28B-204ENST00000469003 IGKV1D-17A0A075B6S4 117 aa13.58□□□□□ -0.24
CCDC28B-204ENST00000469003 BTBD17A6NE02 478 aa13.58□□□□□ -0.24
CCDC28B-204ENST00000469003 PRR32B1ATL7 298 aa13.58□□□□□ -0.24
CCDC28B-204ENST00000469003 GSC2O15499 205 aa13.58□□□□□ -0.24
CCDC28B-204ENST00000469003 DNAJC8O75937 253 aaPredicted RBP13.58□□□□□ -0.24
CCDC28B-204ENST00000469003 PSG2P11465 335 aa13.58□□□□□ -0.24
CCDC28B-204ENST00000469003 GABRA2P47869 451 aa13.58□□□□□ -0.24
CCDC28B-204ENST00000469003 RIDAP52758 137 aaKnown RBP13.58□□□□□ -0.24
CCDC28B-204ENST00000469003 DLX1P56177 255 aa13.58□□□□□ -0.24
CCDC28B-204ENST00000469003 ESRRGP62508 458 aa13.58□□□□□ -0.24
CCDC28B-204ENST00000469003 PRB3Q04118 309 aaPredicted RBP13.58□□□□□ -0.24
CCDC28B-204ENST00000469003 KLRD1Q13241 179 aa13.58□□□□□ -0.24
CCDC28B-204ENST00000469003 PTGES3Q15185 160 aaKnown RBP13.58□□□□□ -0.24
CCDC28B-204ENST00000469003 TAF9Q16594 264 aa13.58□□□□□ -0.24
CCDC28B-204ENST00000469003 NCR3LG1Q68D85 454 aa13.58□□□□□ -0.24
CCDC28B-204ENST00000469003 MOB3CQ70IA8 216 aa13.58□□□□□ -0.24
CCDC28B-204ENST00000469003 ZSCAN4Q8NAM6 433 aaPredicted RBP13.58□□□□□ -0.24
CCDC28B-204ENST00000469003 AQP3Q92482 292 aa13.58□□□□□ -0.24
CCDC28B-204ENST00000469003 PRRG3Q9BZD7 231 aa13.58□□□□□ -0.24
CCDC28B-204ENST00000469003 METTL8Q9H825 291 aaKnown RBP13.58□□□□□ -0.24
CCDC28B-204ENST00000469003 ZNF222Q9UK12 451 aa13.58□□□□□ -0.24
CCDC28B-204ENST00000469003 A0A1W2PQ09 198 aa13.57□□□□□ -0.24
CCDC28B-204ENST00000469003 A0A1W2PRD5 423 aa13.57□□□□□ -0.24
CCDC28B-204ENST00000469003 A0A1W2PRF3 423 aa13.57□□□□□ -0.24
CCDC28B-204ENST00000469003 A0A1W2PRM7 423 aa13.57□□□□□ -0.24
CCDC28B-204ENST00000469003 PRKYO43930 277 aa13.57□□□□□ -0.24
CCDC28B-204ENST00000469003 CLPXO76031 633 aa13.57□□□□□ -0.24
CCDC28B-204ENST00000469003 FAHP16930 419 aa13.57□□□□□ -0.24
CCDC28B-204ENST00000469003 UBE2E1P51965 193 aa13.57□□□□□ -0.24
CCDC28B-204ENST00000469003 KRTAP10-3P60369 221 aa13.57□□□□□ -0.24
CCDC28B-204ENST00000469003 BLMHQ13867 455 aa13.57□□□□□ -0.24
CCDC28B-204ENST00000469003 PLCXD3Q63HM9 321 aa13.57□□□□□ -0.24
CCDC28B-204ENST00000469003 OR5K1Q8NHB7 308 aa13.57□□□□□ -0.24
CCDC28B-204ENST00000469003 UTP4Q969X6 686 aaKnown RBP13.57□□□□□ -0.24
CCDC28B-204ENST00000469003 SDSLQ96GA7 329 aa13.57□□□□□ -0.24
CCDC28B-204ENST00000469003 CNN2Q99439 309 aaKnown RBP13.57□□□□□ -0.24
CCDC28B-204ENST00000469003 TTTY10Q9BZA0 68 aa13.57□□□□□ -0.24
CCDC28B-204ENST00000469003 RASL12Q9NYN1 266 aa13.57□□□□□ -0.24
CCDC28B-204ENST00000469003 ENPP5Q9UJA9 477 aa13.57□□□□□ -0.24
CCDC28B-204ENST00000469003 VPREB3Q9UKI3 123 aa13.57□□□□□ -0.24
CCDC28B-204ENST00000469003 IKZF2Q9UKS7 526 aa13.57□□□□□ -0.24
CCDC28B-204ENST00000469003 PIGLQ9Y2B2 252 aa13.57□□□□□ -0.24
CCDC28B-204ENST00000469003 MAB21L2Q9Y586 359 aa13.57□□□□□ -0.24
CCDC28B-204ENST00000469003 TRBV23-1A0A0A0MS06 115 aa13.56□□□□□ -0.24
CCDC28B-204ENST00000469003 MEIOCA2RUB1 952 aa13.56□□□□□ -0.24
CCDC28B-204ENST00000469003 TIMM23O14925 209 aa13.56□□□□□ -0.24
CCDC28B-204ENST00000469003 SRSF10O75494 262 aaKnown RBP13.56□□□□□ -0.24
CCDC28B-204ENST00000469003 MTRF1O75570 445 aaKnown RBP13.56□□□□□ -0.24
CCDC28B-204ENST00000469003 DHRS3O75911 302 aa13.56□□□□□ -0.24
CCDC28B-204ENST00000469003 PAHP00439 452 aa13.56□□□□□ -0.24
CCDC28B-204ENST00000469003 NRASP01111 189 aa13.56□□□□□ -0.24
CCDC28B-204ENST00000469003 TTRP02766 147 aa13.56□□□□□ -0.24
CCDC28B-204ENST00000469003 SAA4P35542 130 aa13.56□□□□□ -0.24
CCDC28B-204ENST00000469003 PROK1P58294 105 aa13.56□□□□□ -0.24
CCDC28B-204ENST00000469003 MFGE8Q08431 387 aaPredicted RBP13.56□□□□□ -0.24
CCDC28B-204ENST00000469003 ACSM1Q08AH1 577 aa13.56□□□□□ -0.24
CCDC28B-204ENST00000469003 MIDNQ504T8 468 aa13.56□□□□□ -0.24
CCDC28B-204ENST00000469003 DMRTC1Q5HYR2 192 aa13.56□□□□□ -0.24
CCDC28B-204ENST00000469003 DHRS7BQ6IAN0 325 aaPredicted RBP13.56□□□□□ -0.24
CCDC28B-204ENST00000469003 HAGHLQ6PII5 290 aaPredicted RBP13.56□□□□□ -0.24
CCDC28B-204ENST00000469003 Q6ZSV7 163 aa13.56□□□□□ -0.24
CCDC28B-204ENST00000469003 MEPCEQ7L2J0 689 aaKnown RBP13.56□□□□□ -0.24
CCDC28B-204ENST00000469003 PNKDQ8N490 385 aa13.56□□□□□ -0.24
CCDC28B-204ENST00000469003 ZNRF1Q8ND25 227 aa13.56□□□□□ -0.24
CCDC28B-204ENST00000469003 TMEM185AQ8NFB2 350 aa13.56□□□□□ -0.24
CCDC28B-204ENST00000469003 BCAS4Q8TDM0 211 aa13.56□□□□□ -0.24
CCDC28B-204ENST00000469003 PPP1R14AQ96A00 147 aa13.56□□□□□ -0.24
CCDC28B-204ENST00000469003 DUS3LQ96G46 650 aaKnown RBP13.56□□□□□ -0.24
CCDC28B-204ENST00000469003 MNTQ99583 582 aa13.56□□□□□ -0.24
CCDC28B-204ENST00000469003 C16orf95Q9H693 158 aa13.56□□□□□ -0.24
CCDC28B-204ENST00000469003 MOB1AQ9H8S9 216 aa13.56□□□□□ -0.24
CCDC28B-204ENST00000469003 ELL3Q9HB65 397 aaPredicted RBP13.56□□□□□ -0.24
CCDC28B-204ENST00000469003 SLC22A31A6NKX4 558 aa13.55□□□□□ -0.24
CCDC28B-204ENST00000469003 LOC110117498-PIK3R3F6TDL0 507 aa13.55□□□□□ -0.24
CCDC28B-204ENST00000469003 M0QZ24 198 aa13.55□□□□□ -0.24
CCDC28B-204ENST00000469003 ACTR3P61158 418 aa13.55□□□□□ -0.24
CCDC28B-204ENST00000469003 ZNF684Q5T5D7 378 aa13.55□□□□□ -0.24
CCDC28B-204ENST00000469003 ZNF322Q6U7Q0 402 aaPredicted RBP13.55□□□□□ -0.24
CCDC28B-204ENST00000469003 ACP7Q6ZNF0 438 aa13.55□□□□□ -0.24
CCDC28B-204ENST00000469003 BCDIN3DQ7Z5W3 292 aaKnown RBP13.55□□□□□ -0.24
CCDC28B-204ENST00000469003 POC1AQ8NBT0 407 aa13.55□□□□□ -0.24
CCDC28B-204ENST00000469003 OR5R1Q8NH85 324 aa13.55□□□□□ -0.24
CCDC28B-204ENST00000469003 APOL4Q9BPW4 351 aa13.55□□□□□ -0.24
CCDC28B-204ENST00000469003 KRT84Q9NSB2 600 aa13.55□□□□□ -0.24
CCDC28B-204ENST00000469003 H2AFY2Q9P0M6 372 aaPredicted RBP13.55□□□□□ -0.24
CCDC28B-204ENST00000469003 NOTCH1P46531 2555 aa13.54□□□□□ -0.24
CCDC28B-204ENST00000469003 J3QT63 122 aa13.54□□□□□ -0.24
CCDC28B-204ENST00000469003 M0R129 80 aa13.54□□□□□ -0.24
CCDC28B-204ENST00000469003 TSPAN9O75954 239 aa13.54□□□□□ -0.24
CCDC28B-204ENST00000469003 TGFBR2P37173 567 aa13.54□□□□□ -0.24
CCDC28B-204ENST00000469003 CXCR4P61073 352 aa13.54□□□□□ -0.24
CCDC28B-204ENST00000469003 EFNB1P98172 346 aa13.54□□□□□ -0.24
CCDC28B-204ENST00000469003 SMIM21Q3B7S5 101 aa13.54□□□□□ -0.24
CCDC28B-204ENST00000469003 CLVS2Q5SYC1 327 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 113.3 ms