RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 ATPIF1Q9UII2 106 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 ING4Q9UNL4 249 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 MMACHCQ9Y4U1 282 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 MRPS18BQ9Y676 258 aaKnown RBP1.54□□□□□ -2.16
CD44-239ENST00000639002 UBN2Q6ZU65 1347 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 USP42Q9H9J4 1324 aaKnown RBP1.54□□□□□ -2.16
CD44-239ENST00000639002 MAPK8IP3Q9UPT6 1336 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 ADCY9O60503 1353 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 MED1Q15648 1581 aaPredicted RBP1.54□□□□□ -2.16
CD44-239ENST00000639002 ZSWIM8A7E2V4 1837 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 DOPEY1Q5JWR5 2465 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 SETD2Q9BYW2 2564 aaPredicted RBP1.53□□□□□ -2.16
CD44-239ENST00000639002 GLYATL1P3A0A0U1RQE8 302 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 ZNF816-ZNF321PA0A0X1KG74 233 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 GOLGA6L10A6NI86 522 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 GOLGA8JA6NMD2 632 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 ZNF850A8MQ14 1090 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 HACD1B0YJ81 288 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 F8VP50 259 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 PRAMEF26H0Y7S4 382 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 H3BN98 237 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 SULT1C2O00338 296 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 POLR3AO14802 1390 aaPredicted RBP1.53□□□□□ -2.16
CD44-239ENST00000639002 ZBTB5O15062 677 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 ZW10O43264 779 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 GMDSO60547 372 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 FKBP6O75344 327 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 FLNBO75369 2602 aaKnown RBP1.53□□□□□ -2.16
CD44-239ENST00000639002 CLDN11O75508 207 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 SC5DO75845 299 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 RPP14O95059 124 aaKnown RBP1.53□□□□□ -2.16
CD44-239ENST00000639002 TNFAIP8O95379 198 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 DEXIO95424 95 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 CD160O95971 181 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 APOEP02649 317 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 SERPINA5P05154 406 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 KLK1P06870 262 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 GNAO1P09471 354 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 GOLGA8HP0CJ92 632 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 GIMD1P0DJR0 217 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 GFAPP14136 432 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 KDELR2P33947 212 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 RFC3P40938 356 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 AQP2P41181 271 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 CDC34P49427 236 aaPredicted RBP1.53□□□□□ -2.16
CD44-239ENST00000639002 RGS6P49758 472 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 CRISP1P54107 249 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 ATP5J2P56134 94 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 OR2B6P58173 313 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 RPS15AP62244 130 aaKnown RBP1.53□□□□□ -2.16
CD44-239ENST00000639002 SLC35B1P78383 322 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 MRPS25P82663 173 aaKnown RBP1.53□□□□□ -2.16
CD44-239ENST00000639002 DR1Q01658 176 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 SIGLEC14Q08ET2 396 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 MED21Q13503 144 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 FLOT2Q14254 428 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 PON2Q15165 354 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 QPRTQ15274 297 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 RGNQ15493 299 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 GABRA6Q16445 453 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 TNXAQ16473 311 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 FAM78AQ5JUQ0 283 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 TPTE2P1Q5T6R2 138 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 METTL21CQ5VZV1 264 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 RWDD4Q6NW29 188 aaKnown RBP1.53□□□□□ -2.16
CD44-239ENST00000639002 DUX4L9Q6RFH8 374 aaPredicted RBP1.53□□□□□ -2.16
CD44-239ENST00000639002 ARL9Q6T311 187 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 ASCL4Q6XD76 172 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 ASCL5Q7RTU5 278 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 SLC7A5P1Q8MH63 180 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 LGI3Q8N145 548 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 KIF2BQ8N4N8 673 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 MIR7-3HGQ8N6C7 128 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 NOXO1Q8NFA2 376 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 OR1S2Q8NGQ3 325 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 OR5AK3PQ8NH89 298 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 CDC26Q8NHZ8 85 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 ABHD3Q8WU67 409 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 NTAN1Q96AB6 310 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 EEF1AKMT3Q96AZ1 226 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 PPWD1Q96BP3 646 aaKnown RBP1.53□□□□□ -2.16
CD44-239ENST00000639002 S100PBPQ96BU1 408 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 RCN3Q96D15 328 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 OR5B12Q96R08 314 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 GPR21Q99679 349 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 SELENOSQ9BQE4 189 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 SLC38A1Q9H2H9 487 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 C1orf198Q9H425 327 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 METTL8Q9H825 291 aaKnown RBP1.53□□□□□ -2.16
CD44-239ENST00000639002 AGPAT4Q9NRZ5 378 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 SDHAF2Q9NX18 166 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 STMN3Q9NZ72 180 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 JCADQ9P266 1359 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 POFUT2Q9Y2G5 429 aa1.53□□□□□ -2.16
CD44-239ENST00000639002 PCLOQ9Y6V0 5065 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 CNTNAP1P78357 1384 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 A0A1W2PRG6 482 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 TMEM223A0PJW6 202 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 FABP12A6NFH5 140 aa1.52□□□□□ -2.17
CD44-239ENST00000639002 CENPBD1B2RD01 187 aa1.52□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms