RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 RBP2P50120 134 aa12.17□□□□□ -0.46
SKA1-202ENST00000398452 MTCP1P56278 107 aa12.17□□□□□ -0.46
SKA1-202ENST00000398452 RAB11BQ15907 218 aa12.17□□□□□ -0.46
SKA1-202ENST00000398452 ZNF404Q494X3 552 aa12.17□□□□□ -0.46
SKA1-202ENST00000398452 LRRTM1Q86UE6 522 aa12.17□□□□□ -0.46
SKA1-202ENST00000398452 OR13G1Q8NGZ3 307 aa12.17□□□□□ -0.46
SKA1-202ENST00000398452 TMEM171Q8WVE6 324 aa12.17□□□□□ -0.46
SKA1-202ENST00000398452 MRPL24Q96A35 216 aaKnown RBP12.17□□□□□ -0.46
SKA1-202ENST00000398452 RNF170Q96K19 258 aa12.17□□□□□ -0.46
SKA1-202ENST00000398452 ADAT1Q9BUB4 502 aaKnown RBP12.17□□□□□ -0.46
SKA1-202ENST00000398452 C6orf62Q9GZU0 229 aaPredicted RBP12.17□□□□□ -0.46
SKA1-202ENST00000398452 FAIMQ9NVQ4 179 aa12.17□□□□□ -0.46
SKA1-202ENST00000398452 C14orf119Q9NWQ9 140 aa12.17□□□□□ -0.46
SKA1-202ENST00000398452 CISD1Q9NZ45 108 aaKnown RBP12.17□□□□□ -0.46
SKA1-202ENST00000398452 TAAR3PQ9P1P4 343 aa12.17□□□□□ -0.46
SKA1-202ENST00000398452 PKDREJQ9NTG1 2253 aa12.17□□□□□ -0.46
SKA1-202ENST00000398452 CELSR2Q9HCU4 2923 aa12.17□□□□□ -0.46
SKA1-202ENST00000398452 HEATR1Q9H583 2144 aaKnown RBP12.16□□□□□ -0.46
SKA1-202ENST00000398452 TRIM64BA6NI03 449 aa12.16□□□□□ -0.46
SKA1-202ENST00000398452 OR5B21A6NL26 309 aa12.16□□□□□ -0.46
SKA1-202ENST00000398452 RGS5O15539 181 aa12.16□□□□□ -0.46
SKA1-202ENST00000398452 IGHV3-13P01766 116 aa12.16□□□□□ -0.46
SKA1-202ENST00000398452 OR4A8P0C604 315 aa12.16□□□□□ -0.46
SKA1-202ENST00000398452 HTR2CP28335 458 aa12.16□□□□□ -0.46
SKA1-202ENST00000398452 APOBEC3AP31941 199 aaPredicted RBP12.16□□□□□ -0.46
SKA1-202ENST00000398452 CAV3P56539 151 aa12.16□□□□□ -0.46
SKA1-202ENST00000398452 OR10A3P58181 314 aa12.16□□□□□ -0.46
SKA1-202ENST00000398452 UBE2V2Q15819 145 aa12.16□□□□□ -0.46
SKA1-202ENST00000398452 HES5Q5TA89 166 aa12.16□□□□□ -0.46
SKA1-202ENST00000398452 TMEM42Q69YG0 159 aa12.16□□□□□ -0.46
SKA1-202ENST00000398452 FBXL14Q8N1E6 418 aa12.16□□□□□ -0.46
SKA1-202ENST00000398452 DNAAF1Q8NEP3 725 aa12.16□□□□□ -0.46
SKA1-202ENST00000398452 OR5A2Q8NGI9 324 aa12.16□□□□□ -0.46
SKA1-202ENST00000398452 OR51A2Q8NGJ7 313 aa12.16□□□□□ -0.46
SKA1-202ENST00000398452 OR6M1Q8NGM8 313 aa12.16□□□□□ -0.46
SKA1-202ENST00000398452 CEP19Q96LK0 163 aa12.16□□□□□ -0.46
SKA1-202ENST00000398452 UQCC2Q9BRT2 126 aa12.16□□□□□ -0.46
SKA1-202ENST00000398452 MMP27Q9H306 513 aa12.16□□□□□ -0.46
SKA1-202ENST00000398452 METTL17Q9H7H0 456 aaPredicted RBP12.16□□□□□ -0.46
SKA1-202ENST00000398452 DYNLRB1Q9NP97 96 aa12.16□□□□□ -0.46
SKA1-202ENST00000398452 ABRACLQ9P1F3 81 aa12.16□□□□□ -0.46
SKA1-202ENST00000398452 FBXO9Q9UK97 447 aaPredicted RBP12.16□□□□□ -0.46
SKA1-202ENST00000398452 ADAM30Q9UKF2 790 aa12.16□□□□□ -0.46
SKA1-202ENST00000398452 RTTNQ86VV8 2226 aa12.16□□□□□ -0.46
SKA1-202ENST00000398452 SHISA3A0PJX4 238 aa12.15□□□□□ -0.46
SKA1-202ENST00000398452 IFITM5A6NNB3 132 aa12.15□□□□□ -0.46
SKA1-202ENST00000398452 DEFB108AA8MXU0 73 aa12.15□□□□□ -0.46
SKA1-202ENST00000398452 SHISA9B4DS77 424 aa12.15□□□□□ -0.46
SKA1-202ENST00000398452 C19orf84I3L1E1 186 aa12.15□□□□□ -0.46
SKA1-202ENST00000398452 AIPO00170 330 aa12.15□□□□□ -0.46
SKA1-202ENST00000398452 BMP4P12644 408 aa12.15□□□□□ -0.46
SKA1-202ENST00000398452 PRF1P14222 555 aa12.15□□□□□ -0.46
SKA1-202ENST00000398452 COX6B1P14854 86 aa12.15□□□□□ -0.46
SKA1-202ENST00000398452 SERPINF1P36955 418 aa12.15□□□□□ -0.46
SKA1-202ENST00000398452 GNG3P63215 75 aa12.15□□□□□ -0.46
SKA1-202ENST00000398452 TNK1Q13470 666 aa12.15□□□□□ -0.46
SKA1-202ENST00000398452 KISS1Q15726 138 aa12.15□□□□□ -0.46
SKA1-202ENST00000398452 CEACAM21Q3KPI0 293 aa12.15□□□□□ -0.46
SKA1-202ENST00000398452 AWAT2Q6E213 333 aa12.15□□□□□ -0.46
SKA1-202ENST00000398452 ZNF573Q86YE8 665 aa12.15□□□□□ -0.46
SKA1-202ENST00000398452 OR52N4Q8NGI2 321 aa12.15□□□□□ -0.46
SKA1-202ENST00000398452 HPS1Q92902 700 aa12.15□□□□□ -0.46
SKA1-202ENST00000398452 DHRS9Q9BPW9 319 aa12.15□□□□□ -0.46
SKA1-202ENST00000398452 SPOCK3Q9BQ16 436 aa12.15□□□□□ -0.46
SKA1-202ENST00000398452 MRPL37Q9BZE1 423 aaKnown RBP12.15□□□□□ -0.46
SKA1-202ENST00000398452 PCDHB16Q9NRJ7 776 aa12.15□□□□□ -0.46
SKA1-202ENST00000398452 STEAP1Q9UHE8 339 aa12.15□□□□□ -0.46
SKA1-202ENST00000398452 ABCA12Q86UK0 2595 aa12.15□□□□□ -0.47
SKA1-202ENST00000398452 IGLV3-9A0A075B6K5 115 aa12.14□□□□□ -0.47
SKA1-202ENST00000398452 ZNF732B4DXR9 585 aa12.14□□□□□ -0.47
SKA1-202ENST00000398452 B9A039 149 aa12.14□□□□□ -0.47
SKA1-202ENST00000398452 E7EQL1 145 aa12.14□□□□□ -0.47
SKA1-202ENST00000398452 SLC17A2O00624 439 aa12.14□□□□□ -0.47
SKA1-202ENST00000398452 POU3F4P49335 361 aa12.14□□□□□ -0.47
SKA1-202ENST00000398452 EVX1P49640 407 aa12.14□□□□□ -0.47
SKA1-202ENST00000398452 SNRPD2P62316 118 aaKnown RBP12.14□□□□□ -0.47
SKA1-202ENST00000398452 DYNC1I2Q13409 638 aaKnown RBP12.14□□□□□ -0.47
SKA1-202ENST00000398452 RIN1Q13671 783 aa12.14□□□□□ -0.47
SKA1-202ENST00000398452 DAZAP2Q15038 168 aaPredicted RBP12.14□□□□□ -0.47
SKA1-202ENST00000398452 ADIPOQQ15848 244 aa12.14□□□□□ -0.47
SKA1-202ENST00000398452 ZNF672Q499Z4 452 aaPredicted RBP12.14□□□□□ -0.47
SKA1-202ENST00000398452 ZNF529Q6P280 563 aa12.14□□□□□ -0.47
SKA1-202ENST00000398452 UBASH3BQ8TF42 649 aa12.14□□□□□ -0.47
SKA1-202ENST00000398452 TNFAIP8L1Q8WVP5 186 aa12.14□□□□□ -0.47
SKA1-202ENST00000398452 FBXW5Q969U6 566 aa12.14□□□□□ -0.47
SKA1-202ENST00000398452 DIRC2Q96SL1 478 aa12.14□□□□□ -0.47
SKA1-202ENST00000398452 SLC30A2Q9BRI3 323 aa12.14□□□□□ -0.47
SKA1-202ENST00000398452 CXXC4Q9H2H0 198 aa12.14□□□□□ -0.47
SKA1-202ENST00000398452 ELL3Q9HB65 397 aaPredicted RBP12.14□□□□□ -0.47
SKA1-202ENST00000398452 PEX16Q9Y5Y5 336 aa12.14□□□□□ -0.47
SKA1-202ENST00000398452 A3GALT2U3KPV4 340 aa12.14□□□□□ -0.47
SKA1-202ENST00000398452 A0A075B6Q4 140 aa12.13□□□□□ -0.47
SKA1-202ENST00000398452 IGKV1-9A0A0C4DH69 117 aa12.13□□□□□ -0.47
SKA1-202ENST00000398452 TMEM210A6NLX4 147 aa12.13□□□□□ -0.47
SKA1-202ENST00000398452 M0R233 179 aa12.13□□□□□ -0.47
SKA1-202ENST00000398452 TPD52L2O43399 206 aaKnown RBP12.13□□□□□ -0.47
SKA1-202ENST00000398452 CLPXO76031 633 aa12.13□□□□□ -0.47
SKA1-202ENST00000398452 UBBP0CG47 229 aa12.13□□□□□ -0.47
SKA1-202ENST00000398452 TMEM225BP0DP42 221 aa12.13□□□□□ -0.47
SKA1-202ENST00000398452 CALCBP10092 127 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms