RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 PKD1L3Q7Z443 1732 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 PLPP2O43688 288 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 PEX11BO96011 259 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 LIMS3P0CW19 117 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 LIMS4P0CW20 117 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 GALR1P47211 349 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 GNG10P50151 68 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 GUCA2AQ02747 115 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 PARM1Q6UWI2 310 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 GPR32P1Q8NGA4 272 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 KCNE4Q8WWG9 221 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 MMP26Q9NRE1 261 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 MAP1BP46821 2468 aaKnown RBP9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 N4BP2Q86UW6 1770 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 OR2J3O76001 311 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 OR5AL1P0C617 328 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 NDUFB7P17568 137 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 EMP1P54849 157 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 SCAND1P57086 179 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 ZNF121P58317 390 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 SLC16A12Q6ZSM3 486 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 ZDHHC23Q8IYP9 409 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 OIT3Q8WWZ8 545 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 TTC9Q92623 222 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 RSG1Q9BU20 258 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 CHST6Q9GZX3 395 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 OR2D2Q9H210 308 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 PLEKHB1Q9UF11 243 aaPredicted RBP9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 ST3GAL6Q9Y274 331 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 SIGLEC7Q9Y286 467 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 SIRPB1O00241 398 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 ABCD4O14678 606 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 RHBDL1O75783 438 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 OR2J2O76002 312 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 CNIH1O95406 144 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 STAG3L3P0CL85 134 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 IAPPP10997 89 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 KCNJ3P48549 501 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 GPM6AP51674 278 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 TUSC1Q2TAM9 212 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 OR2B11Q5JQS5 317 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 CARFQ8N187 725 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 OSR2Q8N2R0 312 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 FAM24BQ8N5W8 94 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 TEX101Q9BY14 249 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 GAGE10A6NGK3 116 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 CEACAM5P06731 702 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 FPR2P25090 351 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 HMGA2P52926 109 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 SUCLG1P53597 346 aaKnown RBP9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 FOXO1Q12778 655 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 SLC25A26Q70HW3 274 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 THOC3Q96J01 351 aaKnown RBP9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 S1PR3Q99500 378 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 MAGT1Q9H0U3 335 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 ZNF835Q9Y2P0 537 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 ANKRD36CQ5JPF3 1778 aa9.23□□□□□ -0.93
LIMCH1-203ENST00000396595 CCDC187A0A096LP49 1063 aa9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 WNT3P56703 355 aa9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 KIAA0040Q15053 153 aa9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 PLA1AQ53H76 456 aa9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 MTFP1Q9UDX5 166 aa9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 GALR2O43603 387 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 CST4P01036 141 aa9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 SHHQ15465 462 aa9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 MPPED2Q15777 294 aa9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 HIST3H3Q16695 136 aa9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 RTL8BQ17RB0 113 aa9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 SPICQ8N5J4 248 aa9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 OR4S1Q8NGB4 309 aa9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 LHFPL5Q8TAF8 219 aa9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 FAM210BQ96KR6 192 aa9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 TAAR6Q96RI8 345 aa9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 PRRX2Q99811 253 aa9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 RCL1Q9Y2P8 373 aaKnown RBP9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 SOX21Q9Y651 276 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 ARPC3O15145 178 aa9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 HAAOP46952 286 aa9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 ELOBQ15370 118 aa9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 SSX1Q16384 188 aa9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 ATP6V1FQ16864 119 aa9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 KMT5CQ86Y97 462 aa9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 EDARADDQ8WWZ3 215 aa9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 PINX1Q96BK5 328 aaKnown RBP9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 WFIKKN1Q96NZ8 548 aa9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 MARVELD1Q9BSK0 173 aa9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 WASHC3Q9Y3C0 194 aa9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 A0A0B4J2E0 115 aa9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 A0A1B0GX12 115 aa9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 C5orf49A4QMS7 147 aa9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 AVPR2P30518 371 aa9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 MEOX1P50221 254 aa9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 PPP2CBP62714 309 aa9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 CD300LDQ6UXZ3 194 aa9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 OR2W3Q7Z3T1 314 aa9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 FKBP11Q9NYL4 201 aa9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 KLF13Q9Y2Y9 288 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 MMP24Q9Y5R2 645 aa9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 SERTM1A2A2V5 107 aa9.22□□□□□ -0.93
LIMCH1-203ENST00000396595 PMS2P1A4D2B8 440 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms