RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 KCNJ16Q9NPI9 418 aa15.94■□□□□ 0.14
CLN3-206ENST00000360019 MRPL15Q9P015 296 aaKnown RBP15.94■□□□□ 0.14
CLN3-206ENST00000360019 SLC7A11Q9UPY5 501 aa15.94■□□□□ 0.14
CLN3-206ENST00000360019 PLCE1Q9P212 2302 aa15.93■□□□□ 0.14
CLN3-206ENST00000360019 DPRXA6NFQ7 191 aa15.93■□□□□ 0.14
CLN3-206ENST00000360019 B8ZZF3 427 aa15.93■□□□□ 0.14
CLN3-206ENST00000360019 BPNT1O95861 308 aa15.93■□□□□ 0.14
CLN3-206ENST00000360019 VSIG8P0DPA2 414 aa15.93■□□□□ 0.14
CLN3-206ENST00000360019 TALDO1P37837 337 aa15.93■□□□□ 0.14
CLN3-206ENST00000360019 PTGFRP43088 359 aa15.93■□□□□ 0.14
CLN3-206ENST00000360019 QRFPP83859 136 aa15.93■□□□□ 0.14
CLN3-206ENST00000360019 TFF3Q07654 80 aa15.93■□□□□ 0.14
CLN3-206ENST00000360019 UNC119Q13432 240 aa15.93■□□□□ 0.14
CLN3-206ENST00000360019 IL18Q14116 193 aa15.93■□□□□ 0.14
CLN3-206ENST00000360019 MBNL2Q5VZF2 373 aaKnown RBP15.93■□□□□ 0.14
CLN3-206ENST00000360019 C1QL2Q7Z5L3 287 aa15.93■□□□□ 0.14
CLN3-206ENST00000360019 PNLDC1Q8NA58 520 aaKnown RBP15.93■□□□□ 0.14
CLN3-206ENST00000360019 ITPKCQ96DU7 683 aa15.93■□□□□ 0.14
CLN3-206ENST00000360019 A0A0G2JMP0 313 aa15.92■□□□□ 0.14
CLN3-206ENST00000360019 A0A0X1KG70 313 aa15.92■□□□□ 0.14
CLN3-206ENST00000360019 NAT2P11245 290 aa15.92■□□□□ 0.14
CLN3-206ENST00000360019 CA6P23280 308 aa15.92■□□□□ 0.14
CLN3-206ENST00000360019 PTAFRP25105 342 aa15.92■□□□□ 0.14
CLN3-206ENST00000360019 FABP6P51161 128 aa15.92■□□□□ 0.14
CLN3-206ENST00000360019 IFITM3Q01628 133 aa15.92■□□□□ 0.14
CLN3-206ENST00000360019 CEACAM21Q3KPI0 293 aa15.92■□□□□ 0.14
CLN3-206ENST00000360019 ZNF718Q3SXZ3 478 aa15.92■□□□□ 0.14
CLN3-206ENST00000360019 RGS7BPQ6MZT1 257 aaPredicted RBP15.92■□□□□ 0.14
CLN3-206ENST00000360019 OR4M2Q8NGB6 313 aa15.92■□□□□ 0.14
CLN3-206ENST00000360019 TNFAIP8L1Q8WVP5 186 aa15.92■□□□□ 0.14
CLN3-206ENST00000360019 RAB40AQ8WXH6 277 aa15.92■□□□□ 0.14
CLN3-206ENST00000360019 NEK6Q9HC98 313 aa15.92■□□□□ 0.14
CLN3-206ENST00000360019 PURGQ9UJV8 347 aaKnown RBP15.92■□□□□ 0.14
CLN3-206ENST00000360019 MPC1Q9Y5U8 109 aa15.92■□□□□ 0.14
CLN3-206ENST00000360019 SPTBN1Q01082 2364 aaKnown RBP15.92■□□□□ 0.14
CLN3-206ENST00000360019 ZNF462Q96JM2 2506 aa15.92■□□□□ 0.14
CLN3-206ENST00000360019 PQLC2LA1A4F0 135 aa15.91■□□□□ 0.14
CLN3-206ENST00000360019 ZG16O60844 167 aa15.91■□□□□ 0.14
CLN3-206ENST00000360019 SELEP16581 610 aa15.91■□□□□ 0.14
CLN3-206ENST00000360019 GLRXP35754 106 aa15.91■□□□□ 0.14
CLN3-206ENST00000360019 ALDH3B1P43353 468 aa15.91■□□□□ 0.14
CLN3-206ENST00000360019 CAPZA1P52907 286 aa15.91■□□□□ 0.14
CLN3-206ENST00000360019 SORDQ00796 357 aa15.91■□□□□ 0.14
CLN3-206ENST00000360019 BSPH1Q075Z2 132 aa15.91■□□□□ 0.14
CLN3-206ENST00000360019 C16orf87Q6PH81 154 aa15.91■□□□□ 0.14
CLN3-206ENST00000360019 XKRXQ6PP77 449 aa15.91■□□□□ 0.14
CLN3-206ENST00000360019 IZUMO1Q8IYV9 350 aa15.91■□□□□ 0.14
CLN3-206ENST00000360019 PIAS4Q8N2W9 510 aaPredicted RBP15.91■□□□□ 0.14
CLN3-206ENST00000360019 RADILQ96JH8 1075 aa15.91■□□□□ 0.14
CLN3-206ENST00000360019 SPEF1Q9Y4P9 236 aa15.91■□□□□ 0.14
CLN3-206ENST00000360019 TMEM14DPA8MWL7 114 aa15.91■□□□□ 0.14
CLN3-206ENST00000360019 ABCD4O14678 606 aa15.91■□□□□ 0.14
CLN3-206ENST00000360019 CTAG2O75638 210 aa15.91■□□□□ 0.14
CLN3-206ENST00000360019 KITLGP21583 273 aa15.91■□□□□ 0.14
CLN3-206ENST00000360019 GCH1P30793 250 aa15.91■□□□□ 0.14
CLN3-206ENST00000360019 ZNF843Q8N446 348 aa15.91■□□□□ 0.14
CLN3-206ENST00000360019 LINC01560Q8TB33 94 aa15.91■□□□□ 0.14
CLN3-206ENST00000360019 TMEM171Q8WVE6 324 aa15.91■□□□□ 0.14
CLN3-206ENST00000360019 OR5P3Q8WZ94 311 aa15.91■□□□□ 0.14
CLN3-206ENST00000360019 FAM46BQ96A09 425 aa15.91■□□□□ 0.14
CLN3-206ENST00000360019 PTX4Q96A99 478 aa15.91■□□□□ 0.14
CLN3-206ENST00000360019 CPNE2Q96FN4 548 aaPredicted RBP15.91■□□□□ 0.14
CLN3-206ENST00000360019 S100A16Q96FQ6 103 aaKnown RBP15.91■□□□□ 0.14
CLN3-206ENST00000360019 PALMDQ9NP74 551 aa15.91■□□□□ 0.14
CLN3-206ENST00000360019 FBLN5Q9UBX5 448 aa15.91■□□□□ 0.14
CLN3-206ENST00000360019 A0A1W2PP11 408 aa15.9■□□□□ 0.14
CLN3-206ENST00000360019 VGLL3A8MV65 326 aa15.9■□□□□ 0.14
CLN3-206ENST00000360019 SPRY1O43609 319 aaPredicted RBP15.9■□□□□ 0.14
CLN3-206ENST00000360019 C1QL1O75973 258 aa15.9■□□□□ 0.14
CLN3-206ENST00000360019 KDM4BO94953 1096 aa15.9■□□□□ 0.14
CLN3-206ENST00000360019 CDK2P24941 298 aa15.9■□□□□ 0.14
CLN3-206ENST00000360019 PTBP1P26599 531 aaKnown RBP eCLIP15.9■□□□□ 0.14
CLN3-206ENST00000360019 PITPNBP48739 271 aa15.9■□□□□ 0.14
CLN3-206ENST00000360019 GPM6AP51674 278 aa15.9■□□□□ 0.14
CLN3-206ENST00000360019 ATP1B3P54709 279 aa15.9■□□□□ 0.14
CLN3-206ENST00000360019 CALHM1Q8IU99 346 aa15.9■□□□□ 0.14
CLN3-206ENST00000360019 TMEM104Q8NE00 496 aa15.9■□□□□ 0.14
CLN3-206ENST00000360019 ITLN2Q8WWU7 325 aaPredicted RBP15.9■□□□□ 0.14
CLN3-206ENST00000360019 LRRC46Q96FV0 321 aa15.9■□□□□ 0.14
CLN3-206ENST00000360019 ABHD1Q96SE0 405 aa15.9■□□□□ 0.14
CLN3-206ENST00000360019 UPK1BO75841 260 aa15.89■□□□□ 0.13
CLN3-206ENST00000360019 PLATP00750 562 aa15.89■□□□□ 0.13
CLN3-206ENST00000360019 UBBP0CG47 229 aa15.89■□□□□ 0.13
CLN3-206ENST00000360019 ZNF250P15622 560 aa15.89■□□□□ 0.13
CLN3-206ENST00000360019 RAB6AP20340 208 aa15.89■□□□□ 0.13
CLN3-206ENST00000360019 BAK1Q16611 211 aa15.89■□□□□ 0.13
CLN3-206ENST00000360019 PYDC2Q56P42 97 aa15.89■□□□□ 0.13
CLN3-206ENST00000360019 VHLLQ6RSH7 139 aa15.89■□□□□ 0.13
CLN3-206ENST00000360019 LRP11Q86VZ4 500 aa15.89■□□□□ 0.13
CLN3-206ENST00000360019 NUP37Q8NFH4 326 aa15.89■□□□□ 0.13
CLN3-206ENST00000360019 OR8G5Q8NG78 346 aa15.89■□□□□ 0.13
CLN3-206ENST00000360019 OR5A2Q8NGI9 324 aa15.89■□□□□ 0.13
CLN3-206ENST00000360019 GAL3ST1Q99999 423 aa15.89■□□□□ 0.13
CLN3-206ENST00000360019 CCDC32Q9BV29 185 aa15.89■□□□□ 0.13
CLN3-206ENST00000360019 C14orf119Q9NWQ9 140 aa15.89■□□□□ 0.13
CLN3-206ENST00000360019 GHRLQ9UBU3 117 aa15.89■□□□□ 0.13
CLN3-206ENST00000360019 NDRG3Q9UGV2 375 aa15.89■□□□□ 0.13
CLN3-206ENST00000360019 ING4Q9UNL4 249 aa15.89■□□□□ 0.13
CLN3-206ENST00000360019 KMT2BQ9UMN6 2715 aaPredicted RBP15.89■□□□□ 0.13
CLN3-206ENST00000360019 ZNF732B4DXR9 585 aa15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms