RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 DEFB124Q8NES8 71 aa11.27□□□□□ -0.61
SPTLC1-201ENST00000262554 FNDC9Q8TBE3 224 aa11.27□□□□□ -0.61
SPTLC1-201ENST00000262554 OCSTAMPQ9BR26 566 aa11.27□□□□□ -0.61
SPTLC1-201ENST00000262554 CLEC4MQ9H2X3 399 aaPredicted RBP11.27□□□□□ -0.61
SPTLC1-201ENST00000262554 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.27□□□□□ -0.616e-7■■■■□ 21.5
SPTLC1-201ENST00000262554 OPN4Q9UHM6 478 aa11.27□□□□□ -0.61
SPTLC1-201ENST00000262554 ATPIF1Q9UII2 106 aa11.27□□□□□ -0.61
SPTLC1-201ENST00000262554 ANAPC10Q9UM13 185 aa11.27□□□□□ -0.61
SPTLC1-201ENST00000262554 RTTNQ86VV8 2226 aa11.26□□□□□ -0.61
SPTLC1-201ENST00000262554 XRCC2O43543 280 aa11.26□□□□□ -0.61
SPTLC1-201ENST00000262554 SLC22A5O76082 557 aa11.26□□□□□ -0.61
SPTLC1-201ENST00000262554 RGS11O94810 467 aa11.26□□□□□ -0.61
SPTLC1-201ENST00000262554 SIX6O95475 246 aa11.26□□□□□ -0.61
SPTLC1-201ENST00000262554 PMP2P02689 132 aa11.26□□□□□ -0.61
SPTLC1-201ENST00000262554 FTH1P19P0C7X4 201 aa11.26□□□□□ -0.61
SPTLC1-201ENST00000262554 TMEM225BP0DP42 221 aa11.26□□□□□ -0.61
SPTLC1-201ENST00000262554 ZNF35P13682 527 aa11.26□□□□□ -0.61
SPTLC1-201ENST00000262554 CPT2P23786 658 aa11.26□□□□□ -0.61
SPTLC1-201ENST00000262554 BLVRBP30043 206 aaPredicted RBP11.26□□□□□ -0.61
SPTLC1-201ENST00000262554 SSTR2P30874 369 aa11.26□□□□□ -0.61
SPTLC1-201ENST00000262554 H2BFSP57053 126 aa11.26□□□□□ -0.61
SPTLC1-201ENST00000262554 ARG2P78540 354 aa11.26□□□□□ -0.61
SPTLC1-201ENST00000262554 RNPS1Q15287 305 aaKnown RBP11.26□□□□□ -0.61
SPTLC1-201ENST00000262554 C2orf68Q2NKX9 166 aa11.26□□□□□ -0.61
SPTLC1-201ENST00000262554 CLVS2Q5SYC1 327 aa11.26□□□□□ -0.61
SPTLC1-201ENST00000262554 ZBTB37Q5TC79 503 aa11.26□□□□□ -0.61
SPTLC1-201ENST00000262554 TEX261Q6UWH6 196 aa11.26□□□□□ -0.61
SPTLC1-201ENST00000262554 PLXDC2Q6UX71 529 aa11.26□□□□□ -0.61
SPTLC1-201ENST00000262554 PNPLA5Q7Z6Z6 429 aaPredicted RBP11.26□□□□□ -0.61
SPTLC1-201ENST00000262554 MCEMP1Q8IX19 187 aa11.26□□□□□ -0.61
SPTLC1-201ENST00000262554 ZNF100Q8IYN0 542 aa11.26□□□□□ -0.61
SPTLC1-201ENST00000262554 ZFP62Q8NB50 900 aaPredicted RBP11.26□□□□□ -0.61
SPTLC1-201ENST00000262554 OR10K1Q8NGX5 313 aa11.26□□□□□ -0.61
SPTLC1-201ENST00000262554 APH1AQ96BI3 265 aa11.26□□□□□ -0.61
SPTLC1-201ENST00000262554 TM2D1Q9BX74 207 aa11.26□□□□□ -0.61
SPTLC1-201ENST00000262554 TMPRSS13Q9BYE2 586 aa11.26□□□□□ -0.61
SPTLC1-201ENST00000262554 KRTAP3-3Q9BYR6 98 aa11.26□□□□□ -0.61
SPTLC1-201ENST00000262554 KRTAP3-2Q9BYR7 98 aa11.26□□□□□ -0.61
SPTLC1-201ENST00000262554 BCO1Q9HAY6 547 aa11.26□□□□□ -0.61
SPTLC1-201ENST00000262554 PARD6AQ9NPB6 346 aa11.26□□□□□ -0.61
SPTLC1-201ENST00000262554 ACKR4Q9NPB9 350 aa11.26□□□□□ -0.61
SPTLC1-201ENST00000262554 VSIG4Q9Y279 399 aa11.26□□□□□ -0.61
SPTLC1-201ENST00000262554 U3KQ87 197 aa11.26□□□□□ -0.61
SPTLC1-201ENST00000262554 LOC100509620A0A075B734 347 aa11.25□□□□□ -0.61
SPTLC1-201ENST00000262554 FAM230AA0A1W2PPH8 454 aa11.25□□□□□ -0.61
SPTLC1-201ENST00000262554 PLSCR5A0PG75 271 aa11.25□□□□□ -0.61
SPTLC1-201ENST00000262554 RAD51DO75771 328 aa11.25□□□□□ -0.61
SPTLC1-201ENST00000262554 NRASP01111 189 aa11.25□□□□□ -0.61
SPTLC1-201ENST00000262554 DHRS2Q13268 280 aa11.25□□□□□ -0.61
SPTLC1-201ENST00000262554 GK2Q14410 553 aaPredicted RBP11.25□□□□□ -0.61
SPTLC1-201ENST00000262554 TGIF1Q15583 401 aa11.25□□□□□ -0.61
SPTLC1-201ENST00000262554 RTL6Q6ICC9 239 aa11.25□□□□□ -0.61
SPTLC1-201ENST00000262554 LHFPL2Q6ZUX7 228 aa11.25□□□□□ -0.61
SPTLC1-201ENST00000262554 SLC25A42Q86VD7 318 aa11.25□□□□□ -0.61
SPTLC1-201ENST00000262554 WNT2BQ93097 391 aa11.25□□□□□ -0.61
SPTLC1-201ENST00000262554 METTL9Q9H1A3 318 aa11.25□□□□□ -0.61
SPTLC1-201ENST00000262554 LDAHQ9H6V9 325 aa11.25□□□□□ -0.61
SPTLC1-201ENST00000262554 HEXA-AS1Q9H8Q6 139 aa11.25□□□□□ -0.61
SPTLC1-201ENST00000262554 hCG_38984A0A1B0GV85 526 aa11.25□□□□□ -0.61
SPTLC1-201ENST00000262554 FOXI3A8MTJ6 420 aaPredicted RBP11.25□□□□□ -0.61
SPTLC1-201ENST00000262554 SERPINE3A8MV23 424 aa11.25□□□□□ -0.61
SPTLC1-201ENST00000262554 CDRT15L2A8MXV6 281 aa11.25□□□□□ -0.61
SPTLC1-201ENST00000262554 HLA-AP01891 365 aaKnown RBP11.25□□□□□ -0.61
SPTLC1-201ENST00000262554 NFYAP23511 347 aaPredicted RBP11.25□□□□□ -0.61
SPTLC1-201ENST00000262554 CD34P28906 385 aa11.25□□□□□ -0.61
SPTLC1-201ENST00000262554 SOX8P57073 446 aa11.25□□□□□ -0.61
SPTLC1-201ENST00000262554 RSU1Q15404 277 aa11.25□□□□□ -0.61
SPTLC1-201ENST00000262554 MICBQ29980 383 aa11.25□□□□□ -0.61
SPTLC1-201ENST00000262554 ZNF766Q5HY98 468 aa11.25□□□□□ -0.61
SPTLC1-201ENST00000262554 VAX1Q5SQQ9 334 aa11.25□□□□□ -0.61
SPTLC1-201ENST00000262554 DCAF12L2Q5VW00 463 aa11.25□□□□□ -0.61
SPTLC1-201ENST00000262554 FAHD2BQ6P2I3 314 aaPredicted RBP11.25□□□□□ -0.61
SPTLC1-201ENST00000262554 TMEM178AQ8NBL3 297 aa11.25□□□□□ -0.61
SPTLC1-201ENST00000262554 BORCS8Q96FH0 119 aa11.25□□□□□ -0.61
SPTLC1-201ENST00000262554 FAHD2AQ96GK7 314 aa11.25□□□□□ -0.61
SPTLC1-201ENST00000262554 PECRQ9BY49 303 aa11.25□□□□□ -0.61
SPTLC1-201ENST00000262554 PRDM14Q9GZV8 571 aa11.25□□□□□ -0.61
SPTLC1-201ENST00000262554 SPAARA0A1B0GVQ0 90 aa11.24□□□□□ -0.61
SPTLC1-201ENST00000262554 OR2AT4A6NND4 320 aa11.24□□□□□ -0.61
SPTLC1-201ENST00000262554 L7N2F9 121 aa11.24□□□□□ -0.61
SPTLC1-201ENST00000262554 LRP3O75074 770 aa11.24□□□□□ -0.61
SPTLC1-201ENST00000262554 CSTBP04080 98 aaKnown RBP11.24□□□□□ -0.61
SPTLC1-201ENST00000262554 RBP2P50120 134 aa11.24□□□□□ -0.61
SPTLC1-201ENST00000262554 FAM3AP98173 230 aa11.24□□□□□ -0.61
SPTLC1-201ENST00000262554 ZNF92Q03936 586 aa11.24□□□□□ -0.61
SPTLC1-201ENST00000262554 PPA1Q15181 289 aa11.24□□□□□ -0.61
SPTLC1-201ENST00000262554 C9orf135Q5VTT2 229 aa11.24□□□□□ -0.61
SPTLC1-201ENST00000262554 TMEM42Q69YG0 159 aa11.24□□□□□ -0.61
SPTLC1-201ENST00000262554 C17orf107Q6ZR85 190 aa11.24□□□□□ -0.61
SPTLC1-201ENST00000262554 LYG2Q86SG7 212 aa11.24□□□□□ -0.61
SPTLC1-201ENST00000262554 ARRDC1Q8N5I2 433 aa11.24□□□□□ -0.61
SPTLC1-201ENST00000262554 CPEB3Q8NE35 698 aaKnown RBP11.24□□□□□ -0.61
SPTLC1-201ENST00000262554 ZNF680Q8NEM1 530 aa11.24□□□□□ -0.61
SPTLC1-201ENST00000262554 OR5H2Q8NGV7 314 aa11.24□□□□□ -0.61
SPTLC1-201ENST00000262554 FBXW5Q969U6 566 aa11.24□□□□□ -0.61
SPTLC1-201ENST00000262554 MRGPRFQ96AM1 343 aa11.24□□□□□ -0.61
SPTLC1-201ENST00000262554 ELMOD3Q96FG2 381 aa11.24□□□□□ -0.61
SPTLC1-201ENST00000262554 WDR89Q96FK6 387 aaPredicted RBP11.24□□□□□ -0.61
SPTLC1-201ENST00000262554 TECTBQ96PL2 329 aa11.24□□□□□ -0.61
SPTLC1-201ENST00000262554 DPCDQ9BVM2 203 aaPredicted RBP11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms