RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 ANGPTL4Q9BY76 406 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 SHCBP1LQ9BZQ2 653 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 SRRQ9GZT4 340 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 CENPHQ9H3R5 247 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 UGT1A7Q9HAW7 530 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 UGT1A8Q9HAW9 530 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 MRM3Q9HC36 420 aaKnown RBP1.55□□□□□ -2.16
CD44-239ENST00000639002 C6orf50Q9HD87 102 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 FGF20Q9NP95 211 aaPredicted RBP1.55□□□□□ -2.16
CD44-239ENST00000639002 OR2S2Q9NQN1 319 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 NRBP2Q9NSY0 501 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 MS4A12Q9NXJ0 267 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 USE1Q9NZ43 259 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 VAPAQ9P0L0 249 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 SLC17A7Q9P2U7 560 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 UVRAGQ9P2Y5 699 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 LGALS13Q9UHV8 139 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 LSM7Q9UK45 103 aaKnown RBP1.55□□□□□ -2.16
CD44-239ENST00000639002 SLC17A4Q9Y2C5 497 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 FADS3Q9Y5Q0 445 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 PUS1Q9Y606 427 aaKnown RBP eCLIP1.55□□□□□ -2.16
CD44-239ENST00000639002 URGCP-MRPS24S4R325 110 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 ADGRA3Q8IWK6 1321 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 SEC16AO15027 2179 aa1.55□□□□□ -2.16
CD44-239ENST00000639002 CACNA1BQ00975 2339 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 GPR98Q8WXG9 6306 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 IGHV3-74A0A0B4J1X5 117 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 TSPAN11A1L157 253 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 TMEM213A2RRL7 107 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 SLC22A20A6NK97 555 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 TMEM210A6NLX4 147 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 ZNF726A6NNF4 738 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 ZNF99A8MXY4 864 aaPredicted RBP1.54□□□□□ -2.16
CD44-239ENST00000639002 C16orf90A8MZG2 172 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 SEC14L6B5MCN3 397 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 H7C2Y5 167 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 COCHO43405 550 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 SCN2BO60939 215 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 MPDU1O75352 247 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 NDUFS6O75380 124 aaKnown RBP1.54□□□□□ -2.16
CD44-239ENST00000639002 ZMPSTE24O75844 475 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 AIFM1O95831 613 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 TSPAN13O95857 204 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 HBE1P02100 147 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 CT62P0C5K7 136 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 ACSM4P0C7M7 580 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 OCM2P0CE71 109 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 IGHV1-8P0DP01 117 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 FOLR1P15328 257 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 ZNF250P15622 560 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 SYT1P21579 422 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 F2RP25116 425 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 IVDP26440 423 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 PSMB6P28072 239 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 HRH1P35367 487 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 RBM34P42696 430 aaKnown RBP1.54□□□□□ -2.16
CD44-239ENST00000639002 MAGEA2P43356 314 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 CLDN6P56747 220 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 TAS2R60P59551 318 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 UBE2G2P60604 165 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 UBE2MP61081 183 aaKnown RBP1.54□□□□□ -2.16
CD44-239ENST00000639002 UBE2KP61086 200 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 PITPNAQ00169 270 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 FADDQ13158 208 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 STX5Q13190 355 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 TFDP2Q14188 446 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 PON3Q15166 354 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 OR4D1Q15615 310 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 POU2AF1Q16633 256 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 TRMT5Q32P41 509 aaKnown RBP1.54□□□□□ -2.16
CD44-239ENST00000639002 SAPCD1Q5SSQ6 148 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 UBE2UQ5VVX9 321 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 DUPD1Q68J44 220 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 SLC25A48Q6ZT89 311 aaKnown RBP1.54□□□□□ -2.16
CD44-239ENST00000639002 FAM122BQ7Z309 247 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 SETD3Q86TU7 594 aaPredicted RBP1.54□□□□□ -2.16
CD44-239ENST00000639002 UNC93AQ86WB7 457 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 STX12Q86Y82 276 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 CALHM1Q8IU99 346 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 VKORC1L1Q8N0U8 176 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 MS4A15Q8N5U1 240 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 HSD17B11Q8NBQ5 300 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 OR10R2Q8NGX6 335 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 OR5B3Q8NH48 314 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 ITFG1Q8TB96 612 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 ANKRD7Q92527 254 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 CENPNQ96H22 339 aaPredicted RBP1.54□□□□□ -2.16
CD44-239ENST00000639002 SERPINB11Q96P15 392 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 MICU1Q9BPX6 476 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 UTP23Q9BRU9 249 aaKnown RBP1.54□□□□□ -2.16
CD44-239ENST00000639002 CHID1Q9BWS9 393 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 CALN1Q9BXU9 219 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 OR51M1Q9H341 326 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 BEX1Q9HBH7 125 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 RETNQ9HD89 108 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 CD209Q9NNX6 404 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 DDX19AQ9NUU7 478 aaKnown RBP1.54□□□□□ -2.16
CD44-239ENST00000639002 EURLQ9NYK6 297 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 HMGXB4Q9UGU5 601 aa1.54□□□□□ -2.16
CD44-239ENST00000639002 MRM2Q9UI43 246 aaKnown RBP1.54□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 76.8 ms