RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 TSPO2Q5TGU0 170 aa14.25□□□□□ -0.13
COL4A1-204ENST00000543140 GALNTL5Q7Z4T8 443 aa14.25□□□□□ -0.13
COL4A1-204ENST00000543140 CCDC107Q8WV48 283 aa14.25□□□□□ -0.13
COL4A1-204ENST00000543140 PP6455Q8WZ26 134 aa14.25□□□□□ -0.13
COL4A1-204ENST00000543140 PCDHGA1Q9Y5H4 931 aa14.25□□□□□ -0.13
COL4A1-204ENST00000543140 ZNHIT1O43257 154 aa14.25□□□□□ -0.13
COL4A1-204ENST00000543140 MRPL33O75394 65 aaKnown RBP14.25□□□□□ -0.13
COL4A1-204ENST00000543140 MPC2O95563 127 aa14.25□□□□□ -0.13
COL4A1-204ENST00000543140 GSK3AP49840 483 aa14.25□□□□□ -0.13
COL4A1-204ENST00000543140 CLDN18P56856 261 aa14.25□□□□□ -0.13
COL4A1-204ENST00000543140 ZNF680Q8NEM1 530 aa14.25□□□□□ -0.13
COL4A1-204ENST00000543140 SEMA6DQ8NFY4 1073 aa14.25□□□□□ -0.13
COL4A1-204ENST00000543140 MRGPRFQ96AM1 343 aa14.25□□□□□ -0.13
COL4A1-204ENST00000543140 TMA7Q9Y2S6 64 aaKnown RBP14.25□□□□□ -0.13
COL4A1-204ENST00000543140 SLC22A5O76082 557 aa14.24□□□□□ -0.13
COL4A1-204ENST00000543140 PLATP00750 562 aa14.24□□□□□ -0.13
COL4A1-204ENST00000543140 HPNP05981 417 aa14.24□□□□□ -0.13
COL4A1-204ENST00000543140 MGMTP16455 207 aa14.24□□□□□ -0.13
COL4A1-204ENST00000543140 GRK1Q15835 563 aa14.24□□□□□ -0.13
COL4A1-204ENST00000543140 C3AR1Q16581 482 aa14.24□□□□□ -0.13
COL4A1-204ENST00000543140 TMEM251Q8N6I4 163 aa14.24□□□□□ -0.13
COL4A1-204ENST00000543140 PRRT1Q99946 306 aa14.24□□□□□ -0.13
COL4A1-204ENST00000543140 URM1Q9BTM9 101 aaKnown RBP14.24□□□□□ -0.13
COL4A1-204ENST00000543140 OR2H1Q9GZK4 316 aa14.24□□□□□ -0.13
COL4A1-204ENST00000543140 CST11Q9H112 138 aa14.24□□□□□ -0.13
COL4A1-204ENST00000543140 ALX4Q9H161 411 aaPredicted RBP14.24□□□□□ -0.13
COL4A1-204ENST00000543140 WNT5BQ9H1J7 359 aa14.24□□□□□ -0.13
COL4A1-204ENST00000543140 CALHM2Q9HA72 323 aa14.24□□□□□ -0.13
COL4A1-204ENST00000543140 OPN4Q9UHM6 478 aa14.24□□□□□ -0.13
COL4A1-204ENST00000543140 PLEKHA6Q9Y2H5 1048 aa14.24□□□□□ -0.13
COL4A1-204ENST00000543140 TIMM10BQ9Y5J6 103 aa14.24□□□□□ -0.13
COL4A1-204ENST00000543140 OR6C6A6NF89 314 aa14.24□□□□□ -0.13
COL4A1-204ENST00000543140 RIPPLY2Q5TAB7 128 aa14.24□□□□□ -0.13
COL4A1-204ENST00000543140 TUSC5Q8IXB3 177 aa14.24□□□□□ -0.13
COL4A1-204ENST00000543140 OR56B1Q8NGI3 324 aa14.24□□□□□ -0.13
COL4A1-204ENST00000543140 OR4K15Q8NH41 348 aa14.24□□□□□ -0.13
COL4A1-204ENST00000543140 FNDC9Q8TBE3 224 aa14.24□□□□□ -0.13
COL4A1-204ENST00000543140 ELMOD3Q96FG2 381 aa14.24□□□□□ -0.13
COL4A1-204ENST00000543140 S100A13Q99584 98 aa14.24□□□□□ -0.13
COL4A1-204ENST00000543140 OTOGLQ3ZCN5 2332 aa14.24□□□□□ -0.13
COL4A1-204ENST00000543140 PLSCR5A0PG75 271 aa14.23□□□□□ -0.13
COL4A1-204ENST00000543140 OR2AT4A6NND4 320 aa14.23□□□□□ -0.13
COL4A1-204ENST00000543140 F5H5P2 479 aa14.23□□□□□ -0.13
COL4A1-204ENST00000543140 IFNA6P05013 189 aa14.23□□□□□ -0.13
COL4A1-204ENST00000543140 UBBP0CG47 229 aa14.23□□□□□ -0.13
COL4A1-204ENST00000543140 CXCL2P19875 107 aa14.23□□□□□ -0.13
COL4A1-204ENST00000543140 RPS27AP62979 156 aaKnown RBP14.23□□□□□ -0.13
COL4A1-204ENST00000543140 DHRS2Q13268 280 aa14.23□□□□□ -0.13
COL4A1-204ENST00000543140 ARFRP1Q13795 201 aa14.23□□□□□ -0.13
COL4A1-204ENST00000543140 C12orf45Q8N5I9 185 aaPredicted RBP14.23□□□□□ -0.13
COL4A1-204ENST00000543140 NAXEQ8NCW5 288 aa14.23□□□□□ -0.13
COL4A1-204ENST00000543140 HAS2Q92819 552 aa14.23□□□□□ -0.13
COL4A1-204ENST00000543140 CITED4Q96RK1 184 aa14.23□□□□□ -0.13
COL4A1-204ENST00000543140 NUDT16L1Q9BRJ7 211 aaKnown RBP14.23□□□□□ -0.13
COL4A1-204ENST00000543140 SLC7A10Q9NS82 523 aa14.23□□□□□ -0.13
COL4A1-204ENST00000543140 A0A096LPE4 126 aa14.23□□□□□ -0.13
COL4A1-204ENST00000543140 FAM230AA0A1W2PPH8 454 aa14.23□□□□□ -0.13
COL4A1-204ENST00000543140 A0A1W2PPZ6 126 aa14.23□□□□□ -0.13
COL4A1-204ENST00000543140 NOS1APO75052 506 aaPredicted RBP14.23□□□□□ -0.13
COL4A1-204ENST00000543140 ALX3O95076 343 aa14.23□□□□□ -0.13
COL4A1-204ENST00000543140 GSTP1P09211 210 aaKnown RBP14.23□□□□□ -0.13
COL4A1-204ENST00000543140 NAT2P11245 290 aa14.23□□□□□ -0.13
COL4A1-204ENST00000543140 BLVRBP30043 206 aaPredicted RBP14.23□□□□□ -0.13
COL4A1-204ENST00000543140 MTCP1P56278 107 aa14.23□□□□□ -0.13
COL4A1-204ENST00000543140 OR8H3Q8N146 312 aa14.23□□□□□ -0.13
COL4A1-204ENST00000543140 LINC01387J3KSC0 135 aa14.22□□□□□ -0.13
COL4A1-204ENST00000543140 HLA-AP01891 365 aaKnown RBP14.22□□□□□ -0.13
COL4A1-204ENST00000543140 TMEM225BP0DP42 221 aa14.22□□□□□ -0.13
COL4A1-204ENST00000543140 MICBQ29980 383 aa14.22□□□□□ -0.13
COL4A1-204ENST00000543140 PCNPQ8WW12 178 aaKnown RBP14.22□□□□□ -0.13
COL4A1-204ENST00000543140 ST6GALNAC5Q9BVH7 336 aa14.22□□□□□ -0.13
COL4A1-204ENST00000543140 CLEC4MQ9H2X3 399 aaPredicted RBP14.22□□□□□ -0.13
COL4A1-204ENST00000543140 CNOT1A5YKK6 2376 aaKnown RBP14.22□□□□□ -0.13
COL4A1-204ENST00000543140 H3BUI4 141 aa14.22□□□□□ -0.13
COL4A1-204ENST00000543140 MFNGO00587 321 aa14.22□□□□□ -0.13
COL4A1-204ENST00000543140 ANGPTL7O43827 346 aa14.22□□□□□ -0.13
COL4A1-204ENST00000543140 SP1P08047 785 aa14.22□□□□□ -0.13
COL4A1-204ENST00000543140 ZNF708P17019 499 aa14.22□□□□□ -0.13
COL4A1-204ENST00000543140 NFYAP23511 347 aaPredicted RBP14.22□□□□□ -0.13
COL4A1-204ENST00000543140 MEOX1P50221 254 aa14.22□□□□□ -0.13
COL4A1-204ENST00000543140 PABPC1L2AQ5JQF8 200 aa14.22□□□□□ -0.13
COL4A1-204ENST00000543140 Q6ZSR3 168 aa14.22□□□□□ -0.13
COL4A1-204ENST00000543140 MAFIPQ8WZ33 124 aa14.22□□□□□ -0.13
COL4A1-204ENST00000543140 PRRG4Q9BZD6 226 aa14.22□□□□□ -0.13
COL4A1-204ENST00000543140 SLC2A8Q9NY64 477 aa14.22□□□□□ -0.13
COL4A1-204ENST00000543140 ZNF230Q9UIE0 474 aaPredicted RBP14.22□□□□□ -0.13
COL4A1-204ENST00000543140 LOC400499M0QZD8 3231 aa14.22□□□□□ -0.13
COL4A1-204ENST00000543140 FXYD6-FXYD2A0A087WZ82 144 aa14.21□□□□□ -0.13
COL4A1-204ENST00000543140 ARGFXA6NJG6 315 aa14.21□□□□□ -0.13
COL4A1-204ENST00000543140 ARPC5O15511 151 aa14.21□□□□□ -0.13
COL4A1-204ENST00000543140 SPRY1O43609 319 aaPredicted RBP14.21□□□□□ -0.13
COL4A1-204ENST00000543140 CFDP00746 253 aaPredicted RBP14.21□□□□□ -0.13
COL4A1-204ENST00000543140 HOXD11P31277 338 aaPredicted RBP14.21□□□□□ -0.13
COL4A1-204ENST00000543140 FOXG1P55316 489 aaPredicted RBP14.21□□□□□ -0.13
COL4A1-204ENST00000543140 ARF1P84077 181 aaKnown RBP14.21□□□□□ -0.13
COL4A1-204ENST00000543140 RIPPLY1Q0D2K3 151 aa14.21□□□□□ -0.13
COL4A1-204ENST00000543140 LIN54Q6MZP7 749 aa14.21□□□□□ -0.13
COL4A1-204ENST00000543140 CPEB3Q8NE35 698 aaKnown RBP14.21□□□□□ -0.13
COL4A1-204ENST00000543140 FBXW5Q969U6 566 aa14.21□□□□□ -0.13
COL4A1-204ENST00000543140 RADILQ96JH8 1075 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms