RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 BSGP35613 385 aa8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 ZNF121P58317 390 aaPredicted RBP8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 NAA40Q86UY6 237 aa8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 ZNF519Q8TB69 540 aa8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 OR14A2Q96R54 314 aa8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 TMEM147Q9BVK8 224 aa8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 RAB33BQ9H082 229 aa8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 SLC25A31Q9H0C2 315 aa8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 AAMDCQ9H7C9 122 aa8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 ACOT13Q9NPJ3 140 aa8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 SC5DO75845 299 aa8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 HTR2CP28335 458 aa8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 CD34P28906 385 aa8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 MDH2P40926 338 aaKnown RBP8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 WNT3P56703 355 aa8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 PDCD1Q15116 288 aa8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 RIPPLY2Q5TAB7 128 aa8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 C12orf43Q96C57 262 aaKnown RBP8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 CHST6Q9GZX3 395 aa8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 ZMAT4Q9H898 229 aa8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 EBF2Q9HAK2 575 aa8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 ISYNA1Q9NPH2 558 aa8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 CGGBP1Q9UFW8 167 aaPredicted RBP8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 A0A0B4J293 547 aa8.15□□□□□ -1.1
LIMCH1-202ENST00000381753 A0A1W2PN81 502 aa8.15□□□□□ -1.1
LIMCH1-202ENST00000381753 CHRNA7P36544 502 aa8.15□□□□□ -1.1
LIMCH1-202ENST00000381753 SELPLGQ14242 412 aa8.15□□□□□ -1.1
LIMCH1-202ENST00000381753 NCR3LG1Q68D85 454 aa8.15□□□□□ -1.1
LIMCH1-202ENST00000381753 C22orf42Q6IC83 251 aa8.15□□□□□ -1.1
LIMCH1-202ENST00000381753 ZDHHC24Q6UX98 284 aa8.15□□□□□ -1.1
LIMCH1-202ENST00000381753 SOX7Q9BT81 388 aa8.15□□□□□ -1.1
LIMCH1-202ENST00000381753 SCPEP1Q9HB40 452 aa8.15□□□□□ -1.1
LIMCH1-202ENST00000381753 SLC22A13Q9Y226 551 aa8.15□□□□□ -1.1
LIMCH1-202ENST00000381753 ACOD1A6NK06 481 aa8.15□□□□□ -1.1
LIMCH1-202ENST00000381753 NUPL2O15504 423 aaKnown RBP8.15□□□□□ -1.1
LIMCH1-202ENST00000381753 ZNF254O75437 659 aa8.15□□□□□ -1.1
LIMCH1-202ENST00000381753 RAB3DO95716 219 aa8.15□□□□□ -1.1
LIMCH1-202ENST00000381753 GAAP10253 952 aa8.15□□□□□ -1.1
LIMCH1-202ENST00000381753 CST9LP1Q5W188 147 aa8.15□□□□□ -1.1
LIMCH1-202ENST00000381753 LCN10Q6JVE6 187 aa8.15□□□□□ -1.1
LIMCH1-202ENST00000381753 GDPGP1Q6ZNW5 385 aa8.15□□□□□ -1.1
LIMCH1-202ENST00000381753 PLPP7Q8NBV4 271 aa8.15□□□□□ -1.1
LIMCH1-202ENST00000381753 DDB2Q92466 427 aa8.15□□□□□ -1.1
LIMCH1-202ENST00000381753 PRR14Q9BWN1 585 aa8.15□□□□□ -1.1
LIMCH1-202ENST00000381753 EREGO14944 169 aa8.15□□□□□ -1.1
LIMCH1-202ENST00000381753 SELENOFO60613 162 aa8.15□□□□□ -1.1
LIMCH1-202ENST00000381753 CCR9P51686 369 aa8.15□□□□□ -1.1
LIMCH1-202ENST00000381753 MVDP53602 400 aa8.15□□□□□ -1.1
LIMCH1-202ENST00000381753 OR5I1Q13606 314 aa8.15□□□□□ -1.1
LIMCH1-202ENST00000381753 ANGPTL5Q86XS5 388 aa8.15□□□□□ -1.1
LIMCH1-202ENST00000381753 PBOV1Q9GZY1 135 aa8.15□□□□□ -1.1
LIMCH1-202ENST00000381753 V9GY05 133 aa8.15□□□□□ -1.1
LIMCH1-202ENST00000381753 LOXHD1Q8IVV2 1947 aa8.15□□□□□ -1.11
LIMCH1-202ENST00000381753 IGHV3-43A0A0B4J1X8 118 aa8.15□□□□□ -1.11
LIMCH1-202ENST00000381753 SNRNP70P08621 437 aaKnown RBP8.15□□□□□ -1.11
LIMCH1-202ENST00000381753 IGHV3-43DP0DP04 118 aa8.15□□□□□ -1.11
LIMCH1-202ENST00000381753 OPRK1P41145 380 aa8.15□□□□□ -1.11
LIMCH1-202ENST00000381753 ACAA2P42765 397 aaKnown RBP8.15□□□□□ -1.11
LIMCH1-202ENST00000381753 SLC35D3Q5M8T2 416 aa8.15□□□□□ -1.11
LIMCH1-202ENST00000381753 OR10K2Q6IF99 312 aa8.15□□□□□ -1.11
LIMCH1-202ENST00000381753 DRAM2Q6UX65 266 aa8.15□□□□□ -1.11
LIMCH1-202ENST00000381753 OR4F5Q8NH21 305 aa8.15□□□□□ -1.11
LIMCH1-202ENST00000381753 TLCD1Q96CP7 247 aa8.15□□□□□ -1.11
LIMCH1-202ENST00000381753 SLC25A19Q9HC21 320 aa8.15□□□□□ -1.11
LIMCH1-202ENST00000381753 TCF20Q9UGU0 1960 aaKnown RBP8.15□□□□□ -1.11
LIMCH1-202ENST00000381753 CDK5RAP2Q96SN8 1893 aa8.15□□□□□ -1.11
LIMCH1-202ENST00000381753 LEUTXA8MZ59 168 aa8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 TRAF3IP2O43734 574 aaPredicted RBP8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 GNG7O60262 68 aa8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 LIPFP07098 398 aa8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 BMP2P12643 396 aa8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 HTR2AP28223 471 aa8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 CD83Q01151 205 aa8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 RPL22L1Q6P5R6 122 aaKnown RBP8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 ZNF517Q6ZMY9 492 aaPredicted RBP8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 Q6ZPB1 254 aaPredicted RBP8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 LINC01555Q8NAE3 123 aa8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 TMEM163Q8TC26 289 aa8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 OR2V2Q96R30 315 aa8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 CCL13Q99616 98 aa8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 OR51I2Q9H344 312 aa8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 BANF2Q9H503 90 aa8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 GPR35Q9HC97 309 aa8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 TRAV6A0A075B6T7 132 aa8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 J3KTA2 159 aa8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 TAS2R30P59541 319 aa8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 CCDC58Q4VC31 144 aa8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 ETFRF1Q6IPR1 90 aa8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 MCHR2Q969V1 340 aa8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 PHF1O43189 567 aaPredicted RBP8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 SNNO75324 88 aaPredicted RBP8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 OR2T7P0C7T2 308 aa8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 ACHEP22303 614 aa8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 PELI3Q8N2H9 469 aa8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 OR2M3Q8NG83 312 aa8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 ZNF552Q9H707 407 aaPredicted RBP8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 CRIM1Q9NZV1 1036 aa8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 TCRBV16S1A1N1A0A5B0 115 aa8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 THBDP07204 575 aa8.14□□□□□ -1.11
LIMCH1-202ENST00000381753 EPHA2P29317 976 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 147.4 ms