RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 ZNF35P13682 527 aa13.61□□□□□ -0.23
CCDC40-202ENST00000374876 MSR1P21757 451 aa13.61□□□□□ -0.23
CCDC40-202ENST00000374876 MAGEA5P43359 124 aa13.61□□□□□ -0.23
CCDC40-202ENST00000374876 LSM6P62312 80 aaKnown RBP13.61□□□□□ -0.23
CCDC40-202ENST00000374876 CSNK2A1P68400 391 aaPredicted RBP13.61□□□□□ -0.23
CCDC40-202ENST00000374876 OPCMLQ14982 345 aa13.61□□□□□ -0.23
CCDC40-202ENST00000374876 C2orf68Q2NKX9 166 aa13.61□□□□□ -0.23
CCDC40-202ENST00000374876 TMEM251Q8N6I4 163 aa13.61□□□□□ -0.23
CCDC40-202ENST00000374876 OR4S1Q8NGB4 309 aa13.61□□□□□ -0.23
CCDC40-202ENST00000374876 NTNG2Q96CW9 530 aa13.61□□□□□ -0.23
CCDC40-202ENST00000374876 MAB21L2Q9Y586 359 aa13.61□□□□□ -0.23
CCDC40-202ENST00000374876 CSN2P05814 226 aa13.6□□□□□ -0.23
CCDC40-202ENST00000374876 CELA3AP09093 270 aa13.6□□□□□ -0.23
CCDC40-202ENST00000374876 CXCL2P19875 107 aa13.6□□□□□ -0.23
CCDC40-202ENST00000374876 IKZF1Q13422 519 aa13.6□□□□□ -0.23
CCDC40-202ENST00000374876 MPPED2Q15777 294 aa13.6□□□□□ -0.23
CCDC40-202ENST00000374876 ESCO2Q56NI9 601 aa13.6□□□□□ -0.23
CCDC40-202ENST00000374876 RNASE10Q5GAN6 216 aaKnown RBP13.6□□□□□ -0.23
CCDC40-202ENST00000374876 DOK3Q7L591 496 aa13.6□□□□□ -0.23
CCDC40-202ENST00000374876 SPACA5Q96QH8 159 aa13.6□□□□□ -0.23
CCDC40-202ENST00000374876 SOX7Q9BT81 388 aa13.6□□□□□ -0.23
CCDC40-202ENST00000374876 ZNF319Q9P2F9 582 aa13.6□□□□□ -0.23
CCDC40-202ENST00000374876 BOKQ9UMX3 212 aaPredicted RBP13.6□□□□□ -0.23
CCDC40-202ENST00000374876 RP1L1Q8IWN7 2480 aaPredicted RBP13.6□□□□□ -0.23
CCDC40-202ENST00000374876 LINC00862A6NCI5 91 aa13.59□□□□□ -0.23
CCDC40-202ENST00000374876 WIPF3A6NGB9 483 aa13.59□□□□□ -0.23
CCDC40-202ENST00000374876 LEUTXA8MZ59 168 aa13.59□□□□□ -0.23
CCDC40-202ENST00000374876 CBR3O75828 277 aa13.59□□□□□ -0.23
CCDC40-202ENST00000374876 RGS11O94810 467 aa13.59□□□□□ -0.23
CCDC40-202ENST00000374876 ZNF735P0CB33 412 aa13.59□□□□□ -0.23
CCDC40-202ENST00000374876 TDGF1P3P51864 188 aa13.59□□□□□ -0.23
CCDC40-202ENST00000374876 RAB14P61106 215 aa13.59□□□□□ -0.23
CCDC40-202ENST00000374876 NKPD1Q17RQ9 610 aa13.59□□□□□ -0.23
CCDC40-202ENST00000374876 GLIPR1L1Q6UWM5 242 aa13.59□□□□□ -0.23
CCDC40-202ENST00000374876 OR9K2Q8NGE7 335 aa13.59□□□□□ -0.23
CCDC40-202ENST00000374876 PHF3Q92576 2039 aaKnown RBP13.59□□□□□ -0.23
CCDC40-202ENST00000374876 SLC6A7Q99884 636 aa13.59□□□□□ -0.23
CCDC40-202ENST00000374876 PRRT1Q99946 306 aa13.59□□□□□ -0.23
CCDC40-202ENST00000374876 SLX1AQ9BQ83 275 aa13.59□□□□□ -0.23
CCDC40-202ENST00000374876 NELFAQ9H3P2 528 aa13.59□□□□□ -0.23
CCDC40-202ENST00000374876 IFT46Q9NQC8 304 aa13.59□□□□□ -0.23
CCDC40-202ENST00000374876 FBLN5Q9UBX5 448 aa13.59□□□□□ -0.23
CCDC40-202ENST00000374876 MRPS28Q9Y2Q9 187 aaKnown RBP13.59□□□□□ -0.23
CCDC40-202ENST00000374876 TMEM14DPA8MWL7 114 aa13.59□□□□□ -0.23
CCDC40-202ENST00000374876 MCRIP1C9JLW8 97 aa13.59□□□□□ -0.23
CCDC40-202ENST00000374876 H3BUI4 141 aa13.59□□□□□ -0.23
CCDC40-202ENST00000374876 HCKP08631 526 aa13.59□□□□□ -0.23
CCDC40-202ENST00000374876 GNB3P16520 340 aa13.59□□□□□ -0.23
CCDC40-202ENST00000374876 ZNF17P17021 662 aa13.59□□□□□ -0.23
CCDC40-202ENST00000374876 CCL1P22362 96 aa13.59□□□□□ -0.23
CCDC40-202ENST00000374876 GSK3AP49840 483 aa13.59□□□□□ -0.23
CCDC40-202ENST00000374876 SEC61A1P61619 476 aaKnown RBP13.59□□□□□ -0.23
CCDC40-202ENST00000374876 MRPL49Q13405 166 aaKnown RBP13.59□□□□□ -0.23
CCDC40-202ENST00000374876 POU4F3Q15319 338 aa13.59□□□□□ -0.23
CCDC40-202ENST00000374876 C10orf128Q5T292 105 aa13.59□□□□□ -0.23
CCDC40-202ENST00000374876 ATPAF1Q5TC12 328 aaPredicted RBP13.59□□□□□ -0.23
CCDC40-202ENST00000374876 CD163Q86VB7 1156 aa13.59□□□□□ -0.23
CCDC40-202ENST00000374876 OR5AS1Q8N127 324 aa13.59□□□□□ -0.23
CCDC40-202ENST00000374876 GJC3Q8NFK1 279 aa13.59□□□□□ -0.23
CCDC40-202ENST00000374876 OR10R2Q8NGX6 335 aa13.59□□□□□ -0.23
CCDC40-202ENST00000374876 NUDCD2Q8WVJ2 157 aa13.59□□□□□ -0.23
CCDC40-202ENST00000374876 TMEM54Q969K7 222 aa13.59□□□□□ -0.23
CCDC40-202ENST00000374876 PGAM5Q96HS1 289 aa13.59□□□□□ -0.23
CCDC40-202ENST00000374876 TMEM41AQ96HV5 264 aa13.59□□□□□ -0.23
CCDC40-202ENST00000374876 ZNF385AQ96PM9 386 aaKnown RBP13.59□□□□□ -0.23
CCDC40-202ENST00000374876 UCN2Q96RP3 112 aa13.59□□□□□ -0.23
CCDC40-202ENST00000374876 PIGQQ9BRB3 760 aa13.59□□□□□ -0.23
CCDC40-202ENST00000374876 MED12Q93074 2177 aa13.59□□□□□ -0.23
CCDC40-202ENST00000374876 GJE1A6NN92 205 aa13.58□□□□□ -0.24
CCDC40-202ENST00000374876 CFDP00746 253 aaPredicted RBP13.58□□□□□ -0.24
CCDC40-202ENST00000374876 GDF1P27539 372 aa13.58□□□□□ -0.24
CCDC40-202ENST00000374876 GMFBP60983 142 aa13.58□□□□□ -0.24
CCDC40-202ENST00000374876 RAC1P63000 192 aa13.58□□□□□ -0.24
CCDC40-202ENST00000374876 RIPPLY1Q0D2K3 151 aa13.58□□□□□ -0.24
CCDC40-202ENST00000374876 PHYHD1Q5SRE7 291 aa13.58□□□□□ -0.24
CCDC40-202ENST00000374876 DCAF12L2Q5VW00 463 aa13.58□□□□□ -0.24
CCDC40-202ENST00000374876 OR2W3Q7Z3T1 314 aa13.58□□□□□ -0.24
CCDC40-202ENST00000374876 ZGRF1Q86YA3 2104 aa13.58□□□□□ -0.24
CCDC40-202ENST00000374876 C12orf45Q8N5I9 185 aaPredicted RBP13.58□□□□□ -0.24
CCDC40-202ENST00000374876 GVQW1Q8N7I0 195 aa13.58□□□□□ -0.24
CCDC40-202ENST00000374876 ASB13Q8WXK3 278 aa13.58□□□□□ -0.24
CCDC40-202ENST00000374876 GPER1Q99527 375 aa13.58□□□□□ -0.24
CCDC40-202ENST00000374876 NUDT16L1Q9BRJ7 211 aaKnown RBP13.58□□□□□ -0.24
CCDC40-202ENST00000374876 SELENOIQ9C0D9 397 aa13.58□□□□□ -0.24
CCDC40-202ENST00000374876 MYOZ1Q9NP98 299 aaPredicted RBP13.58□□□□□ -0.24
CCDC40-202ENST00000374876 PLEKHA6Q9Y2H5 1048 aa13.58□□□□□ -0.24
CCDC40-202ENST00000374876 ZNF407Q9C0G0 2248 aa13.58□□□□□ -0.24
CCDC40-202ENST00000374876 FXYD6-FXYD2A0A087WZ82 144 aa13.57□□□□□ -0.24
CCDC40-202ENST00000374876 HMSDA8MTL9 139 aa13.57□□□□□ -0.24
CCDC40-202ENST00000374876 TNFSF11O14788 317 aa13.57□□□□□ -0.24
CCDC40-202ENST00000374876 ARPC5O15511 151 aa13.57□□□□□ -0.24
CCDC40-202ENST00000374876 TRAPPC6AO75865 159 aa13.57□□□□□ -0.24
CCDC40-202ENST00000374876 CHRM2P08172 466 aa13.57□□□□□ -0.24
CCDC40-202ENST00000374876 PLA2G2AP14555 144 aa13.57□□□□□ -0.24
CCDC40-202ENST00000374876 ENPP1P22413 925 aa13.57□□□□□ -0.24
CCDC40-202ENST00000374876 ANOS1P23352 680 aa13.57□□□□□ -0.24
CCDC40-202ENST00000374876 CTSSP25774 331 aa13.57□□□□□ -0.24
CCDC40-202ENST00000374876 SLC10A1Q14973 349 aa13.57□□□□□ -0.24
CCDC40-202ENST00000374876 CLLU1Q5K131 121 aa13.57□□□□□ -0.24
CCDC40-202ENST00000374876 RNF144BQ7Z419 303 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms