RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 CLEC3BP05452 202 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 EPHA1P21709 976 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 CHATP28329 748 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 LPAR6P43657 344 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 GPR1P46091 355 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 RPS23P62266 143 aaKnown RBP4.68□□□□□ -1.66
USP28-213ENST00000544967 SPEM2Q0P670 501 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 AMZ1Q400G9 498 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 C14orf28Q4W4Y0 310 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 LRRC73Q5JTD7 316 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 GPR137CQ8N3F9 429 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 OR13C5Q8NGS8 318 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 OR10R2Q8NGX6 335 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 ZNF480Q8WV37 535 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 SNX33Q8WV41 574 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 TMEM239Q8WW34 195 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 TMED6Q8WW62 240 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 RGP1Q92546 391 aaPredicted RBP4.68□□□□□ -1.66
USP28-213ENST00000544967 DCUN1D4Q92564 292 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 DVL3Q92997 716 aaPredicted RBP4.68□□□□□ -1.66
USP28-213ENST00000544967 SEH1LQ96EE3 360 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 ZNF587Q96SQ5 575 aaPredicted RBP4.68□□□□□ -1.66
USP28-213ENST00000544967 PIMREGQ9BSJ6 248 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 NRSN2Q9GZP1 204 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 CHST6Q9GZX3 395 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 SLC25A18Q9H1K4 315 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 GLIPR2Q9H4G4 154 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 ZCCHC3Q9NUD5 404 aaKnown RBP4.68□□□□□ -1.66
USP28-213ENST00000544967 CLEC5AQ9NY25 188 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 FBLN5Q9UBX5 448 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 ZNF230Q9UIE0 474 aaPredicted RBP4.68□□□□□ -1.66
USP28-213ENST00000544967 OR52A1Q9UKL2 312 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 OR1A2Q9Y585 309 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 CSAG2Q9Y5P2 127 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 DMXL1Q9Y485 3027 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 MEGF11A6BM72 1044 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 ZNF736B4DX44 427 aaPredicted RBP4.68□□□□□ -1.66
USP28-213ENST00000544967 DLEU1O43261 78 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 TSPAN2O60636 221 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 SLC16A8O95907 504 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 F3P13726 295 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 GLB1P16278 677 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 LAMA1P25391 3075 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 RND2P52198 227 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 ZNF136P52737 540 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 AKR1C2P52895 323 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 CLDN12P56749 244 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 RAP1BP61224 184 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 AKR1C1Q04828 323 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 EGR3Q06889 387 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 RBM39Q14498 530 aaKnown RBP4.68□□□□□ -1.66
USP28-213ENST00000544967 SLC10A1Q14973 349 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 UBE2V2Q15819 145 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 POM121L1PQ3SYA9 428 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 FAAP20Q6NZ36 180 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 SSX6Q7RTT6 188 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 TMPRSS7Q7RTY8 843 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 FAM220AQ7Z4H9 259 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 PRSS35Q8N3Z0 413 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 BPIFB2Q8N4F0 458 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 ZNF283Q8N7M2 679 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 ZSCAN4Q8NAM6 433 aaPredicted RBP4.68□□□□□ -1.66
USP28-213ENST00000544967 OR4E2Q8NGC2 313 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 GLMPQ8WWB7 406 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 MAFIPQ8WZ33 124 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 NAT6Q93015 286 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 RNF166Q96A37 237 aaPredicted RBP4.68□□□□□ -1.66
USP28-213ENST00000544967 LIN37Q96GY3 246 aaPredicted RBP4.68□□□□□ -1.66
USP28-213ENST00000544967 ADGRG7Q96K78 797 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 WFIKKN1Q96NZ8 548 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 HCAR1Q9BXC0 346 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 CCDC88CQ9P219 2028 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 SLC23A2Q9UGH3 650 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 KCNK6Q9Y257 313 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 HEBP2Q9Y5Z4 205 aa4.68□□□□□ -1.66
USP28-213ENST00000544967 OR2W5A6NFC9 320 aa4.67□□□□□ -1.66
USP28-213ENST00000544967 CPSF4LA6NMK7 179 aaKnown RBP4.67□□□□□ -1.66
USP28-213ENST00000544967 TLX3O43711 291 aaPredicted RBP4.67□□□□□ -1.66
USP28-213ENST00000544967 MED6O75586 246 aa4.67□□□□□ -1.66
USP28-213ENST00000544967 CLEC3AO75596 197 aa4.67□□□□□ -1.66
USP28-213ENST00000544967 OR2C1O95371 312 aa4.67□□□□□ -1.66
USP28-213ENST00000544967 CYB5AP00167 134 aa4.67□□□□□ -1.66
USP28-213ENST00000544967 DANCRP0C864 163 aa4.67□□□□□ -1.66
USP28-213ENST00000544967 OR5H8P0DN80 308 aa4.67□□□□□ -1.66
USP28-213ENST00000544967 ADRA2CP18825 462 aa4.67□□□□□ -1.66
USP28-213ENST00000544967 CD80P33681 288 aa4.67□□□□□ -1.66
USP28-213ENST00000544967 TNFSF10P50591 281 aa4.67□□□□□ -1.66
USP28-213ENST00000544967 NKX6-1P78426 367 aaPredicted RBP4.67□□□□□ -1.66
USP28-213ENST00000544967 LSM11P83369 360 aaKnown RBP eCLIP4.67□□□□□ -1.66
USP28-213ENST00000544967 GAMTQ14353 236 aa4.67□□□□□ -1.66
USP28-213ENST00000544967 RAB35Q15286 201 aa4.67□□□□□ -1.66
USP28-213ENST00000544967 NR0B2Q15466 257 aa4.67□□□□□ -1.66
USP28-213ENST00000544967 OR8G1Q15617 311 aa4.67□□□□□ -1.66
USP28-213ENST00000544967 ARHGAP11BQ3KRB8 267 aa4.67□□□□□ -1.66
USP28-213ENST00000544967 NCMAPQ5T1S8 102 aa4.67□□□□□ -1.66
USP28-213ENST00000544967 RIPPLY2Q5TAB7 128 aa4.67□□□□□ -1.66
USP28-213ENST00000544967 ABLIM2Q6H8Q1 611 aa4.67□□□□□ -1.66
USP28-213ENST00000544967 ZNF585AQ6P3V2 769 aa4.67□□□□□ -1.66
USP28-213ENST00000544967 BTNL3Q6UXE8 466 aa4.67□□□□□ -1.66
USP28-213ENST00000544967 ARHGEF39Q8N4T4 335 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms