RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 BPIFB3P59826 476 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 MAB21L1Q13394 359 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 FAM106AQ4KMX7 169 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 SYT6Q5T7P8 510 aaPredicted RBP8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 EBLN2Q6P2I7 272 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 OR10K1Q8NGX5 313 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 RAX2Q96IS3 184 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 BEX1Q9HBH7 125 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 A4GALTQ9NPC4 353 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 KCNIP2Q9NS61 270 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 NECAP2Q9NVZ3 263 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 SMCHD1A6NHR9 2005 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 PLXNB2O15031 1838 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 KCNE1BA0A087WTH5 132 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 PPIAL4CA0A0B4J2A2 164 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 SYT5O00445 386 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 TAPBPO15533 448 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 NDUFA2O43678 99 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 PPIAL4GP0DN37 164 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 RPS4Y1P22090 263 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 ERP29P30040 261 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 EBPQ15125 230 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 TRNP1Q6NT89 227 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 MALSU1Q96EH3 234 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 ATOH8Q96SQ7 321 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 ACKR4Q9NPB9 350 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 PRSS37A4D1T9 235 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 ZNF716A6NP11 495 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 ZNF736B4DX44 427 aaPredicted RBP8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 DNPH1O43598 174 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 FAM189A1O60320 539 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 HTD2P86397 168 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 Q0VFX4 171 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 DOC2BQ14184 412 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 EMC4Q5J8M3 183 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 CD300LGQ6UXG3 332 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 OR52M1Q8NGK5 317 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 RFESDQ8TAC1 157 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 CCDC32Q9BV29 185 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 PRSS22Q9GZN4 317 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 TAS2R8Q9NYW2 309 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 MEIS3P1A6NDR6 274 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 F5H0A9 414 aaPredicted RBP8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 F5H697 171 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 UPK1AO00322 258 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 C1QL1O75973 258 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 FAHP16930 419 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 TAS2R31P59538 309 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 TSPAN31Q12999 210 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 ATPAF1Q5TC12 328 aaPredicted RBP8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 PCSK4Q6UW60 755 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 OR6T1Q8NGN1 323 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 R3HDM4Q96D70 268 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 HSD17B10Q99714 261 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 SSBP3Q9BWW4 388 aaPredicted RBP8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 FBXL2Q9UKC9 423 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 SPTA1P02549 2419 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 IGHV3-13P01766 116 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 IGHV3-7P01780 117 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 COX6A1P12074 109 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 ARNTP27540 789 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 CAMLGP49069 296 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 FUT7Q11130 342 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 ZNF260Q3ZCT1 412 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 CYS1Q717R9 158 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 OR14K1Q8NGZ2 314 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 ZNF431Q8TF32 576 aaPredicted RBP8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 UHRF2Q96PU4 802 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 NOX4Q9NPH5 578 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 A4GNTQ9UNA3 340 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 ZNF281Q9Y2X9 895 aa8.17□□□□□ -1.1
LIMCH1-202ENST00000381753 NXPH3O95157 252 aa8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 ATP1B1P05026 303 aa8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 PTH2RP49190 550 aa8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 TNFSF10P50591 281 aa8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 RPL31P62899 125 aaKnown RBP8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 BSPH1Q075Z2 132 aa8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 TCEAL1Q15170 157 aa8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 GTPBP8Q8N3Z3 284 aaPredicted RBP8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 PKMYT1Q99640 499 aa8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 SLC2A8Q9NY64 477 aa8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 TFP02787 698 aa8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 ZNF367Q7RTV3 350 aa8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 MYH7BA7E2Y1 1941 aa8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 A0A1B0GV50 99 aa8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 SLC25A16P16260 332 aa8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 ZNF26P17031 533 aaPredicted RBP8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 ZNF616Q08AN1 781 aa8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 SLC25A42Q86VD7 318 aa8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 THNSL2Q86YJ6 484 aa8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 C12orf45Q8N5I9 185 aaPredicted RBP8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 OR8J2Q8NGG1 315 aa8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 OR6M1Q8NGM8 313 aa8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 RPL3LQ92901 407 aaKnown RBP8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 ACY3Q96HD9 319 aa8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 INPP5EQ9NRR6 644 aa8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 ZNF629Q9UEG4 869 aaPredicted RBP8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 TRPM7Q96QT4 1865 aa8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 AKR7A2O43488 359 aa8.16□□□□□ -1.1
LIMCH1-202ENST00000381753 HRASP01112 189 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 104.3 ms