RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 TIMM8BQ9Y5J9 83 aaPredicted RBP3.64□□□□□ -1.83
USH2A-202ENST00000366942 SDK2Q58EX2 2172 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 A0A1B0GTI1 187 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 CCDC182A6NF36 153 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 M0R3H8 397 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 SC5DO75845 299 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 MBP02144 154 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 S100A9P06702 114 aaKnown RBP3.63□□□□□ -1.83
USH2A-202ENST00000366942 CD1DP15813 335 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 CBR1P16152 277 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 CR2P20023 1033 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 ZBTB25P24278 435 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 GDF5P43026 501 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 RAG2P55895 527 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 SELPLGQ14242 412 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 LRRC75BQ2VPJ9 315 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 C4orf48Q5BLP8 95 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 SFRP5Q5T4F7 317 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 AVPI1Q5T686 147 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 RPUSD3Q6P087 351 aaKnown RBP3.63□□□□□ -1.83
USH2A-202ENST00000366942 IL34Q6ZMJ4 242 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 LYG1Q8N1E2 194 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 CLIP4Q8N3C7 705 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 PXT1Q8NFP0 134 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 OR1S2Q8NGQ3 325 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 DLX4Q92988 240 aaPredicted RBP3.63□□□□□ -1.83
USH2A-202ENST00000366942 SLC25A33Q9BSK2 321 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 ZNF385DQ9H6B1 395 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 OAZ3Q9UMX2 235 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 C19orf53Q9UNZ5 99 aaPredicted RBP3.63□□□□□ -1.83
USH2A-202ENST00000366942 IER3IP1Q9Y5U9 82 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 CABIN1Q9Y6J0 2220 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 RNF223E7ERA6 249 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 CORTO00230 105 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 DTYMKP23919 212 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 LAP3P28838 519 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 FUT6P51993 359 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 LIM2P55344 173 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 RAB4BP61018 213 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 RPL27P61353 136 aaKnown RBP3.63□□□□□ -1.83
USH2A-202ENST00000366942 RELAQ04206 551 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 ZNF816Q0VGE8 651 aaPredicted RBP3.63□□□□□ -1.83
USH2A-202ENST00000366942 CYBRD1Q53TN4 286 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 ELFN2Q5R3F8 820 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 LEMD1Q68G75 181 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 ELP2Q6IA86 826 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 CCSAPQ6IQ19 270 aaPredicted RBP3.63□□□□□ -1.83
USH2A-202ENST00000366942 WFDC3Q8IUB2 231 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 OR8I2Q8N0Y5 310 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 OR8J1Q8NGP2 316 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 OR1F12Q8NHA8 337 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 PATE1Q8WXA2 126 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 ESAMQ96AP7 390 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 CGREF1Q99674 301 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 RIMS3Q9UJD0 308 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 STUB1Q9UNE7 303 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 MRPS16Q9Y3D3 137 aaKnown RBP3.63□□□□□ -1.83
USH2A-202ENST00000366942 ESPL1Q14674 2120 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 TRAV8-6A0A0B4J262 113 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 CA11O75493 328 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 RHBDL1O75783 438 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 RFPL3SP0C7P2 107 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 YAP1P46937 504 aaKnown RBP3.63□□□□□ -1.83
USH2A-202ENST00000366942 MGAT2Q10469 447 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 FOXF2Q12947 444 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 SLC48A1Q6P1K1 146 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 NKAIN3Q8N8D7 197 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 C2CD4AQ8NCU7 369 aaPredicted RBP3.63□□□□□ -1.83
USH2A-202ENST00000366942 FAM71CQ8NEG0 241 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 BEST4Q8NFU0 473 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 DEDD2Q8WXF8 326 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 CDS1Q92903 461 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 TMEM186Q96B77 213 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 SLC25A38Q96DW6 304 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 RAB3CQ96E17 227 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 BIRC8Q96P09 236 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 C20orf27Q9GZN8 174 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 CNTD2Q9H8S5 307 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 INPP5EQ9NRR6 644 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 BTNL2Q9UIR0 455 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 GDF2Q9UK05 429 aaPredicted RBP3.63□□□□□ -1.83
USH2A-202ENST00000366942 ST3GAL6Q9Y274 331 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 ABCA7Q8IZY2 2146 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 C4BP0C0L5 1744 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 KANTRA0A1W2PQU2 76 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 TCRBV9S1A1TA0A576 114 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 PSMB11A5LHX3 300 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 TVP23AA6NH52 213 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 SIRPB1O00241 398 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 BET1O15155 118 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 GPRIN2O60269 458 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 DUSP14O95147 198 aaKnown RBP3.63□□□□□ -1.83
USH2A-202ENST00000366942 CD8AP01732 235 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 HBE1P02100 147 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 B4GALT1P15291 398 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 HTN1P15515 57 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 RPL7P18124 248 aaKnown RBP3.63□□□□□ -1.83
USH2A-202ENST00000366942 NPBWR2P48146 333 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 CLDN8P56748 225 aa3.63□□□□□ -1.83
USH2A-202ENST00000366942 HTD2P86397 168 aa3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms