RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 RBFOX1Q9NWB1 397 aaKnown RBP13.99□□□□□ -0.17
PTPRF-201ENST00000359947 FAM53CQ9NYF3 392 aa13.99□□□□□ -0.17
PTPRF-201ENST00000359947 PIGPP57054 158 aa13.99□□□□□ -0.17
PTPRF-201ENST00000359947 LILRA6Q6PI73 481 aa13.99□□□□□ -0.17
PTPRF-201ENST00000359947 LYG1Q8N1E2 194 aa13.99□□□□□ -0.17
PTPRF-201ENST00000359947 ST8SIA2Q92186 375 aa13.99□□□□□ -0.17
PTPRF-201ENST00000359947 KLHDC8BQ8IXV7 354 aa13.99□□□□□ -0.17
PTPRF-201ENST00000359947 SLC25A21Q9BQT8 299 aaPredicted RBP13.99□□□□□ -0.17
PTPRF-201ENST00000359947 CLCF1Q9UBD9 225 aa13.99□□□□□ -0.17
PTPRF-201ENST00000359947 GAB2Q9UQC2 676 aa13.99□□□□□ -0.17
PTPRF-201ENST00000359947 MTCH2Q9Y6C9 303 aa13.99□□□□□ -0.17
PTPRF-201ENST00000359947 IGHV3-43A0A0B4J1X8 118 aa13.99□□□□□ -0.17
PTPRF-201ENST00000359947 M0R1X1 148 aa13.99□□□□□ -0.17
PTPRF-201ENST00000359947 CD3EP07766 207 aa13.99□□□□□ -0.17
PTPRF-201ENST00000359947 IGHV3-43DP0DP04 118 aa13.99□□□□□ -0.17
PTPRF-201ENST00000359947 AQP6Q13520 282 aa13.99□□□□□ -0.17
PTPRF-201ENST00000359947 SPNS3Q6ZMD2 512 aa13.99□□□□□ -0.17
PTPRF-201ENST00000359947 SVBPQ8N300 66 aa13.99□□□□□ -0.17
PTPRF-201ENST00000359947 MZB1Q8WU39 189 aa13.99□□□□□ -0.17
PTPRF-201ENST00000359947 NPTNQ9Y639 398 aa13.99□□□□□ -0.17
PTPRF-201ENST00000359947 TRBV5-4A0A0C4DH59 114 aa13.99□□□□□ -0.17
PTPRF-201ENST00000359947 A0A1B0GTL3 188 aa13.99□□□□□ -0.17
PTPRF-201ENST00000359947 DNASE2O00115 360 aaPredicted RBP13.99□□□□□ -0.17
PTPRF-201ENST00000359947 CHEK1O14757 476 aa13.99□□□□□ -0.17
PTPRF-201ENST00000359947 FUT6P51993 359 aa13.99□□□□□ -0.17
PTPRF-201ENST00000359947 RNF141Q8WVD5 230 aa13.99□□□□□ -0.17
PTPRF-201ENST00000359947 TMEM123Q8N131 208 aa13.98□□□□□ -0.17
PTPRF-201ENST00000359947 OR13C8Q8NGS7 320 aa13.98□□□□□ -0.17
PTPRF-201ENST00000359947 OR5B3Q8NH48 314 aa13.98□□□□□ -0.17
PTPRF-201ENST00000359947 CMBLQ96DG6 245 aa13.98□□□□□ -0.17
PTPRF-201ENST00000359947 TM4SF19Q96DZ7 209 aa13.98□□□□□ -0.17
PTPRF-201ENST00000359947 ZFP64Q9NPA5 681 aa13.98□□□□□ -0.17
PTPRF-201ENST00000359947 PSENENQ9NZ42 101 aa13.98□□□□□ -0.17
PTPRF-201ENST00000359947 AK3Q9UIJ7 227 aa13.98□□□□□ -0.17
PTPRF-201ENST00000359947 DGCR2P98153 550 aa13.98□□□□□ -0.17
PTPRF-201ENST00000359947 TAGLNQ01995 201 aaKnown RBP13.98□□□□□ -0.17
PTPRF-201ENST00000359947 KCNRGQ8N5I3 272 aa13.98□□□□□ -0.17
PTPRF-201ENST00000359947 YIPF5Q969M3 257 aa13.98□□□□□ -0.17
PTPRF-201ENST00000359947 RP1P56715 2156 aa13.98□□□□□ -0.17
PTPRF-201ENST00000359947 RER1O15258 196 aa13.98□□□□□ -0.17
PTPRF-201ENST00000359947 LRP3O75074 770 aa13.98□□□□□ -0.17
PTPRF-201ENST00000359947 MAGEA5P43359 124 aa13.98□□□□□ -0.17
PTPRF-201ENST00000359947 KLF3P57682 345 aaPredicted RBP13.98□□□□□ -0.17
PTPRF-201ENST00000359947 TAAR6Q96RI8 345 aa13.98□□□□□ -0.17
PTPRF-201ENST00000359947 ZNF331Q9NQX6 463 aaPredicted RBP13.98□□□□□ -0.17
PTPRF-201ENST00000359947 ZNF724A8MTY0 619 aa13.98□□□□□ -0.17
PTPRF-201ENST00000359947 ARHGEF39Q8N4T4 335 aa13.98□□□□□ -0.17
PTPRF-201ENST00000359947 PHYHIPQ92561 330 aa13.98□□□□□ -0.17
PTPRF-201ENST00000359947 NRTNQ99748 197 aa13.98□□□□□ -0.17
PTPRF-201ENST00000359947 TUBAL3A6NHL2 446 aa13.98□□□□□ -0.17
PTPRF-201ENST00000359947 SMIM17P0DL12 118 aa13.98□□□□□ -0.17
PTPRF-201ENST00000359947 RFX2P48378 723 aa13.98□□□□□ -0.17
PTPRF-201ENST00000359947 TMEM208Q9BTX3 173 aa13.98□□□□□ -0.17
PTPRF-201ENST00000359947 PLEKHB1Q9UF11 243 aaPredicted RBP13.98□□□□□ -0.17
PTPRF-201ENST00000359947 FZD6O60353 706 aa13.98□□□□□ -0.17
PTPRF-201ENST00000359947 FCER1GP30273 86 aa13.98□□□□□ -0.17
PTPRF-201ENST00000359947 GPR32P1Q8NGA4 272 aa13.98□□□□□ -0.17
PTPRF-201ENST00000359947 ISL2Q96A47 359 aa13.98□□□□□ -0.17
PTPRF-201ENST00000359947 STRAPQ9Y3F4 350 aaKnown RBP13.98□□□□□ -0.17
PTPRF-201ENST00000359947 CASP8AP2Q9UKL3 1982 aa13.98□□□□□ -0.17
PTPRF-201ENST00000359947 ASXL3Q9C0F0 2248 aa13.98□□□□□ -0.17
PTPRF-201ENST00000359947 CCL21O00585 134 aa13.97□□□□□ -0.17
PTPRF-201ENST00000359947 RPL34P49207 117 aaKnown RBP13.97□□□□□ -0.17
PTPRF-201ENST00000359947 OR2A25A4D2G3 310 aa13.97□□□□□ -0.17
PTPRF-201ENST00000359947 H3BP45 60 aa13.97□□□□□ -0.17
PTPRF-201ENST00000359947 PELI1Q96FA3 418 aa13.97□□□□□ -0.17
PTPRF-201ENST00000359947 TCFL5Q9UL49 500 aa13.97□□□□□ -0.17
PTPRF-201ENST00000359947 OPN1MWP04001 364 aa13.97□□□□□ -0.17
PTPRF-201ENST00000359947 OPN1MW2P0DN77 364 aa13.97□□□□□ -0.17
PTPRF-201ENST00000359947 OPN1MW3P0DN78 364 aa13.97□□□□□ -0.17
PTPRF-201ENST00000359947 BPIFB3P59826 476 aa13.97□□□□□ -0.17
PTPRF-201ENST00000359947 ZNF793Q6ZN11 406 aa13.97□□□□□ -0.17
PTPRF-201ENST00000359947 EDARADDQ8WWZ3 215 aa13.97□□□□□ -0.17
PTPRF-201ENST00000359947 LRP12Q9Y561 859 aa13.97□□□□□ -0.17
PTPRF-201ENST00000359947 S100A4P26447 101 aaKnown RBP13.97□□□□□ -0.17
PTPRF-201ENST00000359947 CEACAM6P40199 344 aa13.97□□□□□ -0.17
PTPRF-201ENST00000359947 CCR9P51686 369 aa13.97□□□□□ -0.17
PTPRF-201ENST00000359947 GPBAR1Q8TDU6 330 aa13.97□□□□□ -0.17
PTPRF-201ENST00000359947 RELAQ04206 551 aa13.97□□□□□ -0.17
PTPRF-201ENST00000359947 FAM122CQ6P4D5 195 aa13.97□□□□□ -0.17
PTPRF-201ENST00000359947 ACOT7LQ6ZUV0 252 aa13.97□□□□□ -0.17
PTPRF-201ENST00000359947 LINC01555Q8NAE3 123 aa13.97□□□□□ -0.17
PTPRF-201ENST00000359947 MRGPRX3Q96LB0 322 aa13.97□□□□□ -0.17
PTPRF-201ENST00000359947 PKMYT1Q99640 499 aa13.97□□□□□ -0.17
PTPRF-201ENST00000359947 KRASP01116 189 aa13.97□□□□□ -0.17
PTPRF-201ENST00000359947 PMP22Q01453 160 aa13.97□□□□□ -0.17
PTPRF-201ENST00000359947 SPRED2Q7Z698 418 aa13.97□□□□□ -0.17
PTPRF-201ENST00000359947 SLC25A46Q96AG3 418 aa13.97□□□□□ -0.17
PTPRF-201ENST00000359947 FAM122AQ96E09 287 aa13.97□□□□□ -0.17
PTPRF-201ENST00000359947 AKR1E2Q96JD6 320 aa13.97□□□□□ -0.17
PTPRF-201ENST00000359947 PRDM7Q9NQW5 492 aa13.97□□□□□ -0.17
PTPRF-201ENST00000359947 SCN1AP35498 2009 aa13.97□□□□□ -0.17
PTPRF-201ENST00000359947 A0A1B0GVG6 124 aa13.96□□□□□ -0.17
PTPRF-201ENST00000359947 TMPRSS2O15393 492 aa13.96□□□□□ -0.17
PTPRF-201ENST00000359947 H2AFB1P0C5Y9 115 aa13.96□□□□□ -0.17
PTPRF-201ENST00000359947 OR5H8P0DN80 308 aa13.96□□□□□ -0.17
PTPRF-201ENST00000359947 TAS2R45P59539 299 aa13.96□□□□□ -0.17
PTPRF-201ENST00000359947 SPINK9Q5DT21 86 aa13.96□□□□□ -0.17
PTPRF-201ENST00000359947 STAC2Q6ZMT1 411 aa13.96□□□□□ -0.17
PTPRF-201ENST00000359947 MARCH1Q8TCQ1 289 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms