RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 C9orf78Q9NZ63 289 aaPredicted RBP13.06□□□□□ -0.32
SCN1A-222ENST00000642141 TLL2Q9Y6L7 1015 aa13.06□□□□□ -0.32
SCN1A-222ENST00000642141 SCN9AQ15858 1988 aa13.06□□□□□ -0.32
SCN1A-222ENST00000642141 GRM8O00222 908 aa13.05□□□□□ -0.32
SCN1A-222ENST00000642141 USP17L8P0C7I0 530 aa13.05□□□□□ -0.32
SCN1A-222ENST00000642141 CHRNDQ07001 517 aa13.05□□□□□ -0.32
SCN1A-222ENST00000642141 SCARF1Q14162 830 aa13.05□□□□□ -0.32
SCN1A-222ENST00000642141 SAPCD2Q86UD0 394 aa13.05□□□□□ -0.32
SCN1A-222ENST00000642141 GGA3Q9NZ52 723 aa13.05□□□□□ -0.32
SCN1A-222ENST00000642141 LEMD3Q9Y2U8 911 aa13.05□□□□□ -0.32
SCN1A-222ENST00000642141 ZNF804BA4D1E1 1349 aa13.05□□□□□ -0.32
SCN1A-222ENST00000642141 LBX1P52954 281 aa13.04□□□□□ -0.32
SCN1A-222ENST00000642141 TAF7LQ5H9L4 462 aa13.04□□□□□ -0.32
SCN1A-222ENST00000642141 ANGEL2Q5VTE6 544 aaKnown RBP13.04□□□□□ -0.32
SCN1A-222ENST00000642141 PODNQ7Z5L7 613 aa13.04□□□□□ -0.32
SCN1A-222ENST00000642141 MRPL50Q8N5N7 158 aaKnown RBP13.04□□□□□ -0.32
SCN1A-222ENST00000642141 AGBL3Q8NEM8 1001 aa13.04□□□□□ -0.32
SCN1A-222ENST00000642141 GMLQ99445 158 aa13.04□□□□□ -0.32
SCN1A-222ENST00000642141 SRCIN1Q9C0H9 1055 aa13.04□□□□□ -0.32
SCN1A-222ENST00000642141 ANKRD2Q9GZV1 360 aa13.04□□□□□ -0.32
SCN1A-222ENST00000642141 WBP1LQ9NX94 342 aa13.04□□□□□ -0.32
SCN1A-222ENST00000642141 E9PSI1 815 aa13.03□□□□□ -0.32
SCN1A-222ENST00000642141 NBPF7P0C2Y1 421 aaPredicted RBP13.03□□□□□ -0.32
SCN1A-222ENST00000642141 ECE1P42892 770 aa13.03□□□□□ -0.32
SCN1A-222ENST00000642141 ZNF280AP59817 542 aaPredicted RBP13.03□□□□□ -0.32
SCN1A-222ENST00000642141 SLFN5Q08AF3 891 aa13.03□□□□□ -0.32
SCN1A-222ENST00000642141 CCDC57Q2TAC2 916 aa13.03□□□□□ -0.32
SCN1A-222ENST00000642141 DACT2Q5SW24 774 aa13.03□□□□□ -0.32
SCN1A-222ENST00000642141 SSH1Q8WYL5 1049 aa13.03□□□□□ -0.32
SCN1A-222ENST00000642141 MYOZ2Q9NPC6 264 aa13.03□□□□□ -0.32
SCN1A-222ENST00000642141 TSKSQ9UJT2 592 aa13.03□□□□□ -0.32
SCN1A-222ENST00000642141 MYH3P11055 1940 aa13.03□□□□□ -0.32
SCN1A-222ENST00000642141 MED23Q9ULK4 1368 aa13.03□□□□□ -0.32
SCN1A-222ENST00000642141 ALDH1L1O75891 902 aa13.02□□□□□ -0.33
SCN1A-222ENST00000642141 CTCFP49711 727 aaPredicted RBP13.02□□□□□ -0.33
SCN1A-222ENST00000642141 HUNKP57058 714 aa13.02□□□□□ -0.33
SCN1A-222ENST00000642141 GTF2IP78347 998 aa13.02□□□□□ -0.33
SCN1A-222ENST00000642141 NBPF9Q3BBW0 867 aa13.02□□□□□ -0.33
SCN1A-222ENST00000642141 PRAMEF18Q5VWM3 479 aa13.02□□□□□ -0.33
SCN1A-222ENST00000642141 TTLL5Q6EMB2 1281 aa13.02□□□□□ -0.33
SCN1A-222ENST00000642141 LDHAL6AQ6ZMR3 332 aa13.02□□□□□ -0.33
SCN1A-222ENST00000642141 SULF1Q8IWU6 871 aa13.02□□□□□ -0.33
SCN1A-222ENST00000642141 SUCLG2Q96I99 432 aa13.02□□□□□ -0.33
SCN1A-222ENST00000642141 COA1Q9GZY4 146 aa13.02□□□□□ -0.33
SCN1A-222ENST00000642141 CNNM1Q9NRU3 951 aa13.02□□□□□ -0.33
SCN1A-222ENST00000642141 JAG2Q9Y219 1238 aa13.02□□□□□ -0.33
SCN1A-222ENST00000642141 MAP2K1Q02750 393 aaPredicted RBP13.01□□□□□ -0.33
SCN1A-222ENST00000642141 KIAA0825Q8IV33 1275 aa13.01□□□□□ -0.33
SCN1A-222ENST00000642141 KAZALD1Q96I82 304 aa13.01□□□□□ -0.33
SCN1A-222ENST00000642141 ZIC5Q96T25 663 aa13.01□□□□□ -0.33
SCN1A-222ENST00000642141 TRPM7Q96QT4 1865 aa13.01□□□□□ -0.33
SCN1A-222ENST00000642141 SASH1O94885 1247 aa13□□□□□ -0.33
SCN1A-222ENST00000642141 STRIP1Q5VSL9 837 aa13□□□□□ -0.33
SCN1A-222ENST00000642141 OGFOD1Q8N543 542 aa13□□□□□ -0.33
SCN1A-222ENST00000642141 C2orf69Q8N8R5 385 aa13□□□□□ -0.33
SCN1A-222ENST00000642141 CDCA5Q96FF9 252 aa13□□□□□ -0.33
SCN1A-222ENST00000642141 BEGAINQ9BUH8 593 aa13□□□□□ -0.33
SCN1A-222ENST00000642141 PUS3Q9BZE2 481 aaKnown RBP13□□□□□ -0.33
SCN1A-222ENST00000642141 BICC1Q9H694 974 aaKnown RBP13□□□□□ -0.33
SCN1A-222ENST00000642141 GBA2Q9HCG7 927 aaPredicted RBP13□□□□□ -0.33
SCN1A-222ENST00000642141 CD209Q9NNX6 404 aa13□□□□□ -0.33
SCN1A-222ENST00000642141 F8W031 263 aaPredicted RBP12.99□□□□□ -0.33
SCN1A-222ENST00000642141 HSPA8P11142 646 aaKnown RBP12.99□□□□□ -0.33
SCN1A-222ENST00000642141 SMC4Q9NTJ3 1288 aa12.99□□□□□ -0.33
SCN1A-222ENST00000642141 CACNA1FO60840 1977 aa12.99□□□□□ -0.33
SCN1A-222ENST00000642141 POLR2AP24928 1970 aaKnown RBP12.99□□□□□ -0.33
SCN1A-222ENST00000642141 ZNF157P51786 506 aaPredicted RBP12.98□□□□□ -0.33
SCN1A-222ENST00000642141 MOB2Q70IA6 237 aa12.98□□□□□ -0.33
SCN1A-222ENST00000642141 KLHDC4Q8TBB5 520 aa12.98□□□□□ -0.33
SCN1A-222ENST00000642141 IRS2Q9Y4H2 1338 aa12.97□□□□□ -0.33
SCN1A-222ENST00000642141 WNT10BO00744 389 aa12.97□□□□□ -0.33
SCN1A-222ENST00000642141 MAP2K2P36507 400 aa12.97□□□□□ -0.33
SCN1A-222ENST00000642141 CERS5Q8N5B7 392 aa12.97□□□□□ -0.33
SCN1A-222ENST00000642141 PRDM10Q9NQV6 1147 aa12.97□□□□□ -0.33
SCN1A-222ENST00000642141 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.97□□□□□ -0.33
SCN1A-222ENST00000642141 PCDHAC2Q9Y5I4 1007 aa12.97□□□□□ -0.33
SCN1A-222ENST00000642141 PTPRCP08575 1304 aa12.96□□□□□ -0.33
SCN1A-222ENST00000642141 UBE2Q2LH0YL09 131 aa12.96□□□□□ -0.33
SCN1A-222ENST00000642141 CCER2I3L3R5 266 aa12.96□□□□□ -0.33
SCN1A-222ENST00000642141 GYG1P46976 350 aa12.96□□□□□ -0.33
SCN1A-222ENST00000642141 PRKG1Q13976 671 aa12.96□□□□□ -0.33
SCN1A-222ENST00000642141 LRRC24Q50LG9 513 aa12.96□□□□□ -0.33
SCN1A-222ENST00000642141 RGMBQ6NW40 437 aa12.96□□□□□ -0.33
SCN1A-222ENST00000642141 ZNF804AQ7Z570 1209 aa12.96□□□□□ -0.33
SCN1A-222ENST00000642141 ANKRD44Q8N8A2 993 aa12.96□□□□□ -0.33
SCN1A-222ENST00000642141 HHIPL1Q96JK4 782 aa12.96□□□□□ -0.33
SCN1A-222ENST00000642141 USP44Q9H0E7 712 aa12.96□□□□□ -0.33
SCN1A-222ENST00000642141 NOB1Q9ULX3 412 aaKnown RBP12.96□□□□□ -0.33
SCN1A-222ENST00000642141 UTYO14607 1347 aa12.95□□□□□ -0.34
SCN1A-222ENST00000642141 MYO3BQ8WXR4 1341 aa12.95□□□□□ -0.34
SCN1A-222ENST00000642141 FAM155AB1AL88 458 aaPredicted RBP12.95□□□□□ -0.34
SCN1A-222ENST00000642141 TTLL12Q14166 644 aaPredicted RBP12.95□□□□□ -0.34
SCN1A-222ENST00000642141 TRMT2AQ8IZ69 625 aaKnown RBP12.95□□□□□ -0.34
SCN1A-222ENST00000642141 HDAC9Q9UKV0 1011 aa12.95□□□□□ -0.34
SCN1A-222ENST00000642141 IQSEC3Q9UPP2 1182 aaPredicted RBP12.95□□□□□ -0.34
SCN1A-222ENST00000642141 IL1R1P14778 569 aa12.94□□□□□ -0.34
SCN1A-222ENST00000642141 KIF23Q02241 960 aaPredicted RBP12.94□□□□□ -0.34
SCN1A-222ENST00000642141 NOGQ13253 232 aa12.94□□□□□ -0.34
SCN1A-222ENST00000642141 DLGAP5Q15398 846 aa12.94□□□□□ -0.34
SCN1A-222ENST00000642141 ALDH1L2Q3SY69 923 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 93.4 ms